GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 10:43:02 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-kvYzo/C01HBa0216G16/C01HBa0216G16.seq.screen ________________________________________________________________________________ Sequence 1: C01HBa0216G16.1, from 1 to 196870, both strands analyzed. ... started at: Tue Jul 25 10:53:53 2006 EST library file: /tmp/cxgn-bacpublish-resources-foyOox/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 21 EST library file: /tmp/cxgn-bacpublish-resources-foyOox/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 22 ******************************************************************************** EST sequence 12 -strand 304 n (File: SGN-U336946-) 1 AAAAGTGGTG GTTTAATTGG AGCAGCCCAT CAGGCATTAA TGGAACTTGG AAGGCACCGG 61 TCCGTTATCC TTCCACTGCA CAAAGCGGAA GTTTTTCGTT GCTCTGTGAA ACCAGCCTCA 121 CGCGGTCCAC CCCACTTTAG GAATCTAGTA GCCCATTCTT TCAATTGGAC CACATGATCC 181 AACTCTGTGC TTGGATAGGG CAGGCCAGAA ATTAGCCCAC CAAGCCCAAC CATCTGGTAC 241 AGCCCAACAT TCCACCACAT TAATGCCCCC ATTTGGGTTA CAAGCCCACA TTACTAAGCT 301 CGGC Predicted gene structure (within gDNA segment 22957 to 21300): Exon 1 22347 22044 ( 304 n); cDNA 1 304 ( 304 n); score: 0.852 MATCH C01HBa0216G16.1- SGN-U336946- 0.852 304 1.000 C PGS_C01HBa0216G16.1-_SGN-U336946- (22347 22044) Alignment (genomic DNA sequence = upper lines): AAAAGTGGTG GTTTAATTGG AGCAGCCCAT CAGGCGTTAT TGTACTTAGG AGGGTACCGA 22288 |||||||||| |||||||||| |||||||||| ||||| ||| || | | || | || |||| AAAAGTGGTG GTTTAATTGG AGCAGCCCAT CAGGCATTAA TGGAACTTGG AAGGCACCGG 60 CTCGTTATCC TTCCACTGCA TAAAGCGGGA ACTGTTCGTT GCTCTGTGAA ACCAGCCTCA 22228 |||||||| |||||||||| ||||||| | | |||||| |||||||||| |||||||||| TCCGTTATCC TTCCACTGCA CAAAGCGGAA GTTTTTCGTT GCTCTGTGAA ACCAGCCTCA 120 CGCAGTCCGC TCAACTTTAG GAACCCAACA GCCCATTCCT TCGATTGGGT AGCAAGGCCC 22168 ||| |||| | | ||||||| ||| | | | |||||||| | || ||||| || | || CGCGGTCCAC CCCACTTTAG GAATCTAGTA GCCCATTCTT TCAATTGGAC CACATGATCC 180 AGCTCTATGT TTGGACAGGG CAGGCCAGAA ATTAGCCCAC CAGGCCCAAC CATCTGGAAC 22108 | |||| || ||||| |||| |||||||||| |||||||||| || ||||||| ||||||| || AACTCTGTGC TTGGATAGGG CAGGCCAGAA ATTAGCCCAC CAAGCCCAAC CATCTGGTAC 240 AGCCCAACAT TCCACCATAC TAATGCCCCC GCTTGGGTTA CAAGCCCATG TTACTAAGCT 22048 |||||||||| ||||||| | |||||||||| |||||||| |||||||| |||||||||| AGCCCAACAT TCCACCACAT TAATGCCCCC ATTTGGGTTA CAAGCCCACA TTACTAAGCT 300 CGGC 22044 |||| CGGC 304 hqPGS_C01HBa0216G16.1-_SGN-U336946- (22347 22044) ******************************************************************************** EST sequence 18 -strand 304 n (File: SGN-U340944-) 1 AAATGTGGTA GTTTAACTAG AACAGCCCAT CAGACATTCG TTGAACTTAT ATGACACTGG 61 CTCGTTATCC TTCCACTGCA CAGAGCGGGA GCTATTCGTT GCTCTGTGAA ACCAGCCTCA 121 CGCAGTCCAC CCCACTTTAG GAGCCCAGCA GCCCAAGCCT TCGCTTGGCC CACAAGACCC 181 AACTCTTTGC TTGGACAGGG CAGGCCAGAG AATTGTCACA CAAGCCCTAC CTTCTGGGCA 241 TGTTCAACAT TCCACCACAC TGATGCCCTC ACTTGAGTTA CAAGCCCACG CTACTGAGCT 301 CGGC Predicted gene structure (within gDNA segment 23497 to 19860): Exon 1 22347 22044 ( 304 n); cDNA 1 304 ( 304 n); score: 0.796 MATCH C01HBa0216G16.1- SGN-U340944- 0.796 304 1.000 C PGS_C01HBa0216G16.1-_SGN-U340944- (22347 22044) Alignment (genomic DNA sequence = upper lines): AAAAGTGGTG GTTTAATTGG AGCAGCCCAT CAGGCGTT-A TTGTACTTAG GAGGGTACCG 22289 ||| ||||| |||||| | | | |||||||| ||| | || ||| ||||| | | || | AAATGTGGTA GTTTAACTAG AACAGCCCAT CAGACATTCG TTGAACTTA- TATGACACTG 59 ACTCGTTATC CTTCCACTGC ATAAAGCGGG AACTGTTCGT TGCTCTGTGA AACCAGCCTC 22229 ||||||||| |||||||||| | | |||||| | || ||||| |||||||||| |||||||||| GCTCGTTATC CTTCCACTGC ACAGAGCGGG AGCTATTCGT TGCTCTGTGA AACCAGCCTC 119 ACGCAGTCCG CTCAACTTTA GGAACCCAAC AGCCCATTCC TTCGATTGGG TAGCAAGGCC 22169 ||||||||| | | |||||| ||| |||| | |||||| || |||| |||| |||| || ACGCAGTCCA CCCCACTTTA GGAGCCCAGC AGCCCAAGCC TTCGCTTGGC CCACAAGACC 179 CAGCTCTATG TTTGGACAGG GCAGGCCAGA -AATTAGCCC ACCAGGCCCA ACCATCTGGA 22110 || |||| || ||||||||| |||||||||| |||| | | | || |||| ||| ||||| CAACTCTTTG CTTGGACAGG GCAGGCCAGA GAATTGTCAC A-CAAGCCCT ACCTTCTGGG 238 ACAGCCCAAC ATTCCACCAT ACTAATGCCC CCGCTTGGGT TACAAGCCCA TGTTACTAAG 22050 | |||| ||||||||| ||| |||||| | |||| || |||||||||| | |||| || CATGTTCAAC ATTCCACCAC ACTGATGCCC TCACTTGAGT TACAAGCCCA CGCTACTGAG 298 CTCGGC 22044 |||||| CTCGGC 304 hqPGS_C01HBa0216G16.1-_SGN-U340944- (22347 22044) ******************************************************************************** EST sequence 16 -strand 300 n (File: SGN-U319860-) 1 AAAAATGGTG GTTTAATTGG AGCAACCCAT CAGGCGTTAC TGGACTCAGA GAACACCGAC 61 TCGTTATCCT TCCACCGCTT AGAGCGAAAC TTATCGTTGC TCTGTGAAAC CAGCCTCACG 121 CATTCCGCCC CACTTTACGA ATCAAGTAGT CCATTTCTTC AATTGGGCCA CATGATCCAA 181 CTCTAAGCTT GGATAGGGCA AGTCAGAAAT TAGCCCACCA AGCCCAACCA TCTGGTACAG 241 CCCAACATTC CACCACATTA ATGCCCCCAT TTGGGTTACA AGCCCACATT ACTAAGCTCG Predicted gene structure (within gDNA segment 24782 to 21320): Exon 1 22347 22046 ( 302 n); cDNA 1 300 ( 300 n); score: 0.844 MATCH C01HBa0216G16.1- SGN-U319860- 0.844 302 1.007 C PGS_C01HBa0216G16.1-_SGN-U319860- (22347 22046) Alignment (genomic DNA sequence = upper lines): AAAAGTGGTG GTTTAATTGG AGCAGCCCAT CAGGCGTTAT TGTACTTAGG AGGGTACCGA 22288 |||| ||||| |||||||||| |||| ||||| ||||||||| || ||| | | || ||||| AAAAATGGTG GTTTAATTGG AGCAACCCAT CAGGCGTTAC TGGACTCA-G AGAACACCGA 59 CTCGTTATCC TTCCACTGCA TAAAGCGGGA ACTGTTCGTT GCTCTGTGAA ACCAGCCTCA 22228 |||||||||| |||||| || || ||| | | ||| ||||| |||||||||| |||||||||| CTCGTTATCC TTCCACCGCT TAGAGC-GAA ACTTATCGTT GCTCTGTGAA ACCAGCCTCA 118 CGCAGTCCGC TCAACTTTAG GAACCCAACA GCCCATTCCT TCGATTGGGT AGCAAGGCCC 22168 |||| ||||| | |||||| ||| | | | | ||||| || || |||||| || | || CGCATTCCGC CCCACTTTAC GAATCAAGTA GTCCATTTCT TCAATTGGGC CACATGATCC 178 AGCTCTATGT TTGGACAGGG CAGGCCAGAA ATTAGCCCAC CAGGCCCAAC CATCTGGAAC 22108 | ||||| | ||||| |||| || | ||||| |||||||||| || ||||||| ||||||| || AACTCTAAGC TTGGATAGGG CAAGTCAGAA ATTAGCCCAC CAAGCCCAAC CATCTGGTAC 238 AGCCCAACAT TCCACCATAC TAATGCCCCC GCTTGGGTTA CAAGCCCATG TTACTAAGCT 22048 |||||||||| ||||||| | |||||||||| |||||||| |||||||| |||||||||| AGCCCAACAT TCCACCACAT TAATGCCCCC ATTTGGGTTA CAAGCCCACA TTACTAAGCT 298 CG 22046 || CG 300 hqPGS_C01HBa0216G16.1-_SGN-U319860- (22347 22046) ******************************************************************************** EST sequence 15 -strand 298 n (File: SGN-U319858-) 1 GTGGTGGTTT AATTGGAGCA GCCCATCAGG CATTAATGGA ACTTGGAAGG CACCGGTCCG 61 TTATCCTTCC ACTGCACAAA GCGGAAGTTT TTCGTTGCTC TGTGAAACCA GCCTCACGCG 121 GTCCACCCCA CTTTAGGAAT CTAGTAGCCC ATTCTTTCAA TTGGACCACA TGATCCAACT 181 CTGTGCTTGG ATAGGGCAGG CCAGAAATTA GCCCACCAAG CCCAGCCATC TGGGACAGCC 241 CAATATTCCA CCACCTTAAC ATCCCCACTT GGGTTACAAG CCCACGTTAC TAAGCTCG Predicted gene structure (within gDNA segment 22953 to 19835): Exon 1 22343 22046 ( 298 n); cDNA 1 298 ( 298 n); score: 0.836 MATCH C01HBa0216G16.1- SGN-U319858- 0.836 298 1.000 C PGS_C01HBa0216G16.1-_SGN-U319858- (22343 22046) Alignment (genomic DNA sequence = upper lines): GTGGTGGTTT AATTGGAGCA GCCCATCAGG CGTTATTGTA CTTAGGAGGG TACCGACTCG 22284 |||||||||| |||||||||| |||||||||| | ||| || | | ||| || |||| || GTGGTGGTTT AATTGGAGCA GCCCATCAGG CATTAATGGA ACTTGGAAGG CACCGGTCCG 60 TTATCCTTCC ACTGCATAAA GCGGGAACTG TTCGTTGCTC TGTGAAACCA GCCTCACGCA 22224 |||||||||| |||||| ||| |||| | | |||||||||| |||||||||| ||||||||| TTATCCTTCC ACTGCACAAA GCGGAAGTTT TTCGTTGCTC TGTGAAACCA GCCTCACGCG 120 GTCCGCTCAA CTTTAGGAAC CCAACAGCCC ATTCCTTCGA TTGGGTAGCA AGGCCCAGCT 22164 |||| | | | ||||||||| | | ||||| |||| ||| | |||| || | ||| || GTCCACCCCA CTTTAGGAAT CTAGTAGCCC ATTCTTTCAA TTGGACCACA TGATCCAACT 180 CTATGTTTGG ACAGGGCAGG CCAGAAATTA GCCCACCAGG CCCAACCATC TGGAACAGCC 22104 || || |||| | |||||||| |||||||||| |||||||| | |||| ||||| ||| |||||| CTGTGCTTGG ATAGGGCAGG CCAGAAATTA GCCCACCAAG CCCAGCCATC TGGGACAGCC 240 CAACATTCCA CCATACTAAT GCCCCCGCTT GGGTTACAAG CCCATGTTAC TAAGCTCG 22046 ||| |||||| ||| ||| |||| ||| |||||||||| |||| ||||| |||||||| CAATATTCCA CCACCTTAAC ATCCCCACTT GGGTTACAAG CCCACGTTAC TAAGCTCG 298 hqPGS_C01HBa0216G16.1-_SGN-U319858- (22343 22046) ******************************************************************************** EST sequence 19 -strand 250 n (File: SGN-U341660-) 1 AAAGTGGTGG TTTAGTTGGA GCAGCCCATC AGGGCGTTAA CTGGACTCGC TGAGCACTGA 61 CCCGTTATCC TTCCACTGCA CAGAGCGGAA GCTGTTCGTT GCTCTGTGAA ACCAGCCTCA 121 CGCAGTCCAC CCCACTTTAG GAATCAAGCA ACCCAGGTCT TTCGACTAAG CCACGTGATC 181 CAACTCCATG CTTGGAGAGG GCAGGCCAGA CTATAAGCCT ACCGAACCCA ACCATCTGGG 241 TCAACCCAAC Predicted gene structure (within gDNA segment 23515 to 20400): Exon 1 22346 22100 ( 247 n); cDNA 1 250 ( 250 n); score: 0.769 MATCH C01HBa0216G16.1- SGN-U341660- 0.769 247 0.988 C PGS_C01HBa0216G16.1-_SGN-U341660- (22346 22100) Alignment (genomic DNA sequence = upper lines): AAAGTGGTGG TTTAATTGGA GCAGCCCATC A-GGCGTT-A TTGTACTTAG GAGGGTACCG 22289 |||||||||| |||| ||||| |||||||||| | |||||| | || || | | | | || | AAAGTGGTGG TTTAGTTGGA GCAGCCCATC AGGGCGTTAA CTGGAC-TCG CTGAGCACTG 59 ACTCGTTATC CTTCCACTGC ATAAAGCGGG AACTGTTCGT TGCTCTGTGA AACCAGCCTC 22229 || ||||||| |||||||||| | | ||||| | |||||||| |||||||||| |||||||||| ACCCGTTATC CTTCCACTGC ACAGAGCGGA AGCTGTTCGT TGCTCTGTGA AACCAGCCTC 119 ACGCAGTCCG CTCAACTTTA GGAACCCAAC AGCCCA-TTC CTTCGATTGG GTAGCAAGGC 22170 ||||||||| | | |||||| |||| | | | | |||| || ||||| | | | | ACGCAGTCCA CCCCACTTTA GGAATCAAGC AACCCAGGTC TTTCGACTAA GCCACGTGAT 179 CCAGCTCTAT GTTTGGACAG GGCAGGCCAG A-AATTAGCC CACCAGGCCC AACCATCTGG 22111 ||| ||| || | ||||| || |||||||||| | || |||| ||| ||| |||||||||| CCAACTCCAT GCTTGGAGAG GGCAGGCCAG ACTATAAGCC TACCGAACCC AACCATCTGG 239 AACAGCCCAA C 22100 || ||||| | GTCAACCCAA C 250 hqPGS_C01HBa0216G16.1-_SGN-U341660- (22346 22100) ******************************************************************************** EST sequence 35 -strand 928 n (File: SGN-U346995-) 1 TAATCTGTAA AAAGGTCTTC AAGAGGAAGT AATTTTTCCG GGCAAAGGTA TAAATAATAG 61 AATAAGCCCG ACAATTTTTC AATAGGCCAT ATGAATAATA CCCATTATCC TTAATAAAGG 121 GTATGCTTTT GCATAAATTA TTATTCAAAA CGCATAAATT TTATTTGTAT GAATCCTGTA 181 TCTTTCAAAT NCCAAACAGA AACCATGGTT ACTTATATTA TTGGTATGAA TACTGTATGA 241 NNATTGTATG AATTATATCA TATTATACTT TGATATGTAG AACATAACCA TACATTATTT 301 TATATGCAAA TTTTGTATAT AGTCCTCATT CAATATGCAA TAACTGTATG CATACTATAT 361 GAATATTATA TGACTTATTA TTGGTATATT ATACTTTCAT ATACAAAATA GTAACAAATG 421 TTAATATATG AACAGTTGTA TGTACAATGT ATGAACATTG TATGAAAAAT AATATGATTC 481 AATAAAAAAA ATAAAACAGG TGTCTAACAA TTTAAATACT CAAAAACACA GATGTAACAG 541 TAGGAAATCA TTGTTTTTGT ACAGGATAAT TTGAACATGT ATTCCTTTTT TGTCCAACTT 601 GATGGCATCT ACTGCATGTG CTTTTTGTCC TCTTGAATTT CACATCAGCG AACCCCTTCC 661 AGTGTTCAAA TTTGGGTCTT CCCGCTGATC TTTTTGGACC AGGTGGCATC ATTTTAAGCT 721 CTGAAATATA GCTTGGTATA TCCCATGTAC TCTCGCATGG GATAGGCTCA ACAGGAATGA 781 CATAAGCATC TCTGAAATTC ATACACAATC TATACACACT TACTATATAA TTCCTCGTGC 841 CGAATTCCTG CAGCCCGGGG GATCCACTAG TTCTAGAGCG GCCGCCACCG CGGTGAGCTC 901 CAGCTGTGTT TCAANNCCCC TGNGCCCC Predicted gene structure (within gDNA segment 27987 to 37576): Exon 1 28714 28725 ( 12 n); cDNA 90 101 ( 12 n); score: 0.833 Intron 1 28726 30067 (1342 n); Pd: 0.900 (s: 0), Pa: 0.534 (s: 0) Exon 2 30068 30083 ( 16 n); cDNA 102 117 ( 16 n); score: 0.562 Intron 2 30084 32969 (2886 n); Pd: 0.673 (s: 0), Pa: 0.934 (s: 0) Exon 3 32970 33006 ( 37 n); cDNA 118 151 ( 34 n); score: 0.595 Intron 3 33007 33488 ( 482 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.77) Exon 4 33489 33596 ( 108 n); cDNA 152 259 ( 108 n); score: 0.782 Intron 4 33597 33779 ( 183 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.84) Exon 5 33780 34310 ( 531 n); cDNA 260 800 ( 541 n); score: 0.756 Intron 5 34311 34730 ( 420 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 6 34731 34762 ( 32 n); cDNA 801 832 ( 32 n); score: 0.781 MATCH C01HBa0216G16.1+ SGN-U346995- 0.761 736 0.793 C PGS_C01HBa0216G16.1+_SGN-U346995- (28714 28725,30068 30083,32970 33006,33489 33596,33780 34310,34731 34762) Alignment (genomic DNA sequence = upper lines): TATAACTAAT ACGTAAAACC CCTAACTATA CCATTTACTC CCATATATTC TCCCAAATTC 28773 ||| | |||| || TATGAATAAT AC........ .......... .......... .......... .......... 101 CAATTCCCTC TTCCTCAAGT CTTCTCCCTC AAGCAATCCA GGGCTTCATG ATCTCAAGTC 28833 .......... .......... .......... .......... .......... .......... 101 TTCATTGAAG GATTTTACCT AGGATTTCTA TGTGGGAACT TTATCACTAG GTCCTTTTTC 28893 .......... .......... .......... .......... .......... .......... 101 ACCCATTGAG TCCCAAAAAA ACCTTAATTT CTTAATTTAT TATCCTATCA AATTTTAGGG 28953 .......... .......... .......... .......... .......... .......... 101 TTTCATGATT TCTTATTACT TTTTATTGAA TTTCAGATTC TTCTTCAGGA TTGATCTTAT 29013 .......... .......... .......... .......... .......... .......... 101 AATGCATGAA TTTGTTATAA GTTAATTATC TCAATGGTAT TATTATGAAC GCATGACATG 29073 .......... .......... .......... .......... .......... .......... 101 CAAGTATTTT GATGATCACA ACTATGCTAT TTACTGGATC TAGGACGACG TGTTTTCCCT 29133 .......... .......... .......... .......... .......... .......... 101 AACTTTTAAA GGAGCAAGCT CACTTCCAAT GGTTTGACAT GGAAATTCAA TACCACACTC 29193 .......... .......... .......... .......... .......... .......... 101 CGTGAGTTGT CTTGCTAATA TTTCAAATTC TTTATCCACA TCTTCCAAGG ACTCGCACGG 29253 .......... .......... .......... .......... .......... .......... 101 GATTTTAAAG TGAAAGATGT TAAGTTTTTT ATTTGAATGT TTTGTCCTTA AATGCTTGAA 29313 .......... .......... .......... .......... .......... .......... 101 GTGATTGTCC ATGTTTTCTT TTTATTTCGA GTTGTCTCTC CAACTTTTTC AGCTTTTTGT 29373 .......... .......... .......... .......... .......... .......... 101 TGATCTCACT AACATTGACA TTTTGATGAT CTACAAGGAT GGGTTAGGAT CATTATTGTT 29433 .......... .......... .......... .......... .......... .......... 101 GGGTGTAGGA TTTTCTCCGA GAAATCTAAC CACAATTAAT TGAGAATGTT ACTTGTAAGT 29493 .......... .......... .......... .......... .......... .......... 101 TGGTTTGATT TTGATTCCAT GCAACTTCAA TTCTTCTGTG GCAATTAGGT CTTCTCATGA 29553 .......... .......... .......... .......... .......... .......... 101 TTAAGCTTTT GATAGATTGT AAGAAACTGT GATGTTGAGT GTTTGTTTGA ATTATATACT 29613 .......... .......... .......... .......... .......... .......... 101 TATGGCGATA GAATTATCAT ATTATTTGAT CAAAATGAAC TCAAATAACA AAAGAGTAAA 29673 .......... .......... .......... .......... .......... .......... 101 AACATTTATG ATGATTCCTT ATTCGGTAAG ATTTGACCCA AATCATAATA TTATGAACTT 29733 .......... .......... .......... .......... .......... .......... 101 CCTTTTTTGT TTCATTCTAT CTTTGTCACT CCGATCTATA CAAATTACAA ATAACATAAT 29793 .......... .......... .......... .......... .......... .......... 101 TCTTTTTAGA TTAATTTATT TTATTGAATT ATTGGAAAAG TTTTTGTTGT GTCATTCTTT 29853 .......... .......... .......... .......... .......... .......... 101 TCTGAGTTAA TATGTAAATT GATGATAGTC ACTGAGGTTT TATAAAATTG TAGTTGTATA 29913 .......... .......... .......... .......... .......... .......... 101 CTTTTCTCTT GTTCAACTAT GTATATTTCC TAAGAGAACA TAAAGTCATC ATTGAAGTTG 29973 .......... .......... .......... .......... .......... .......... 101 TCCCGGATTT TTAAAAAGAC ATCTTAACTT TGTAACTGTC CTATTACCCA CTAAACAATT 30033 .......... .......... .......... .......... .......... .......... 101 TTGAACGTAT GTTATTATAT CATTTTTCGA TTAGCCCCAA ATTTTAAGAA GCAAGTGTGT 30093 || | |||| || .......... .......... .......... ....CCATTA TCCTTAATAA .......... 117 TCACACACCA ATCATAACAT GACACGTGTT AATGTAAAAA AAAATCATTT TATGTTTTTC 30153 .......... .......... .......... .......... .......... .......... 117 TTTTATTTTT TCTTTATTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTGTCTCTG 30213 .......... .......... .......... .......... .......... .......... 117 TCTCTCTCTC TCTCTTTAAT TTTAATTTTG ATTTATCTTA AATTTCATTT CATCTTCCAC 30273 .......... .......... .......... .......... .......... .......... 117 CTCTCACCTC TAAGTAATTC ATCCCTCCAT TTTCTTTTTT TTTTCTTCAC CTCCCATCCC 30333 .......... .......... .......... .......... .......... .......... 117 CCATGTCAAA TAAAATCTCA CTCCCATTTT TTTATTTTCT TTTTCTTCTT TTTCTCCGGT 30393 .......... .......... .......... .......... .......... .......... 117 CAAATTCTTT ATAGAATTAA TTATATTATT TAGAATTTAC TAAAATATTA ATAACAAAAT 30453 .......... .......... .......... .......... .......... .......... 117 TAATTATTAT TCCAAGAAAA TTTAAAATAT TGAAGAATCA TGAACTACTC ATTTTCTTAT 30513 .......... .......... .......... .......... .......... .......... 117 AAATTCAAAA TTAGAAATCA TAATTTTAAA AGAATCAATT AATCCCCCAA AAATTGAAAG 30573 .......... .......... .......... .......... .......... .......... 117 AACTTAATTG AAATTGGATA AGAAAAAACT ATATGATACT TCCTAATCAT CTCACTTCCT 30633 .......... .......... .......... .......... .......... .......... 117 AATCATCCCA TTAATTTATC TCATTTTCGT ATAACTTCAA AACTAGAAAT AATAATTTTG 30693 .......... .......... .......... .......... .......... .......... 117 AAAGAATCAT AATTCTCCTA AAATTGAAAA ATTTTAATTG AAATTTGGAT AAAATAAACT 30753 .......... .......... .......... .......... .......... .......... 117 AAATAATACC TACTAATCAT CTTGAAATCT AATGGGTTTA TCAAATTGTT AAAATGTAAT 30813 .......... .......... .......... .......... .......... .......... 117 AAACTATTTA GATATAGTTT TAAGATTGAA GAGAGTTAAA TTAATAGTAG TAAAAAGGGG 30873 .......... .......... .......... .......... .......... .......... 117 AAACAGAGTT GTGGTAACAA GAGACATTTA AATTGAGAAG TTTCAATGAA GATGAAAATG 30933 .......... .......... .......... .......... .......... .......... 117 AATTTTTGAA GAAGAAGGAA GAAAGAAAAA GAAAAAATTA ATAAGGACAA AAAGTTTAAA 30993 .......... .......... .......... .......... .......... .......... 117 TAATAAGAAA AACAAGAAAA TGTTTTTAAT AGCAAAATAC TTGCAAAAAT AAAATTATAT 31053 .......... .......... .......... .......... .......... .......... 117 TCATTTTTTT AGTTTGTTCA TGCTCTTTAA GAGAGTGCAT ACACTCTGTA TGCCAGGTGG 31113 .......... .......... .......... .......... .......... .......... 117 ACAAAAAATG ATGTAATAAT ATCAATTCAG AGTAGTTTAG GGGGGTAATA GGACGCTTGC 31173 .......... .......... .......... .......... .......... .......... 117 ATAGTTTAAG TGTCTTTTTG AAAAATCAGG ACAATTTCAT GTGTCACTTT ATGTCTTTTC 31233 .......... .......... .......... .......... .......... .......... 117 TCTATTTCAT AATGTAGACA TGCTTAATAA ATACCTTCCA ATATTAACTT CATAATATAA 31293 .......... .......... .......... .......... .......... .......... 117 AAATATTGAA TTTCTAACTT ATATTGACGT ACAATTAGGT TTAAGAACTT CAGTTTAAAA 31353 .......... .......... .......... .......... .......... .......... 117 TTTTAAGTTA TTTTTATGTG TTCGAAAGCC TTTGCAACTC GTAAAATATA CTGTAACTTA 31413 .......... .......... .......... .......... .......... .......... 117 TGACATGTTG AAGAATACTG TAATAAGAAA ATCCAAATCC CAACACAATT TAACATGTAT 31473 .......... .......... .......... .......... .......... .......... 117 AAACCACGTT AGAGTATTCT CATACACTTA ATAGTTTATT ATAAAATTTT AAAACGATAC 31533 .......... .......... .......... .......... .......... .......... 117 ACGAATTTGT TTCTCTTTTT TGATCCAACA AACTAATTAA TATTTGAAAT AAAAATAATA 31593 .......... .......... .......... .......... .......... .......... 117 CTACACACAC ATTTAAGATG TTAAATATCA AGTTATAAAC AAACTTCTTA ATAATAAACT 31653 .......... .......... .......... .......... .......... .......... 117 ACTTATAGCA TATTATTATC TAGTTATAGC ATATCAAGAA AAAATATATT ATTCTCATTA 31713 .......... .......... .......... .......... .......... .......... 117 ATTTTTTAAA ATAATAATTA ACTTATTTAA ATAATTACAT TTATTATTCA ATTACCTTAT 31773 .......... .......... .......... .......... .......... .......... 117 TTAAACCAAT GTATTTAATT AAATTTATTA TTTTAAGTTA CCTTTTTAAA ACAAAACTCT 31833 .......... .......... .......... .......... .......... .......... 117 TAATTAATGT AATTTAAATT AAATATTATA TAGTTACCTT TTTTAAGATA ACTACAAAAT 31893 .......... .......... .......... .......... .......... .......... 117 AGGAATTTTA TCAATATCTA AAACAATTAC TTTAAAACTG TAAAACGTTA TCTAAACAAA 31953 .......... .......... .......... .......... .......... .......... 117 AAATAACAAT AATTTATATT CCCTAAATTT TTGTTCTTCC CCAAATCCTT TCAAAATCAT 32013 .......... .......... .......... .......... .......... .......... 117 TACCTTTGCA CGCCTATCAA AATTATTCAC CAAATTTTGC ACGCCTAAAT TTTTATTTTC 32073 .......... .......... .......... .......... .......... .......... 117 ACCAAAATTT CACTCAAAAT CGCTTCTCTC TTAAGAGTCT TCTTCAAGAA TTCTCAAATA 32133 .......... .......... .......... .......... .......... .......... 117 TTTGCATTCA AATCTTAATT TTTAGCACTC AAATCTTCAA CTCTTGCGCT AAACAAACCG 32193 .......... .......... .......... .......... .......... .......... 117 TACAATGTCG AAAAGAGGCA ATGAAACACC GAGAAAAAGT AGAAGATTGA ATGATGAAAC 32253 .......... .......... .......... .......... .......... .......... 117 AAGCTCAGAC GATTTTCATG CTCCATCTTT CAAAATTTTA TCACAAACAC AATCTCAACC 32313 .......... .......... .......... .......... .......... .......... 117 TTCATCTGTT AAAGTTAAAT CTAGATCAGG GAAATCAAAA ATAGAAAGAA AAAAAACATC 32373 .......... .......... .......... .......... .......... .......... 117 CAAAGGAAAC GAGAAGAAGG GAAAAGGGAA AGAAAAGAAA AAAGTAGATG AATCTGAGAA 32433 .......... .......... .......... .......... .......... .......... 117 AAGGACGAAA GAAAGAGGAA AGAAGAGGAA TGGAAAAGAA ATCGAGGACT CATCAGATCT 32493 .......... .......... .......... .......... .......... .......... 117 GAATGTGATT TCGTATAAGA GATGATAAAA TCAAAATCCA AAAAACCAAG AGCCTCTGAA 32553 .......... .......... .......... .......... .......... .......... 117 ATCGATACTT CACATTTACA AGAAGAAGAA GAAGCAGTTG AACCCAAAAA AAAAGTTCAA 32613 .......... .......... .......... .......... .......... .......... 117 AGGTTAGTAA AAGTTAATTT TTTAAAACTT TTTTATGTTC TGTTATTTTT ATTTTCTGTT 32673 .......... .......... .......... .......... .......... .......... 117 ATTTTGGTAT AACATAGTTA ATATATAATT TTTGTGTATA TAAATAATGT ATAAATTGTG 32733 .......... .......... .......... .......... .......... .......... 117 TATGATTCAC TGTATGAAAT TACAAATTTC TTCATATTAC AATATCAATT GCTGAAACAT 32793 .......... .......... .......... .......... .......... .......... 117 GTATTTTTTA TGTATGATTC ATTGTATGAA TTGTGTATGA TTCACTGTAT GAATTGTGTA 32853 .......... .......... .......... .......... .......... .......... 117 TGATTCACTG TATGATTCGC TGTATATATA AAATGTGTAT GAAATGTATA TGAATTGTGT 32913 .......... .......... .......... .......... .......... .......... 117 ATAAATTTTT TTGTATCAAG TTTTTTCATA CAATTTTTTT TTCAATTTAT ATACAGTGAT 32973 | .......... .......... .......... .......... .......... ......AGGG 121 TGTGGTTTAT ACACATCTCT ATTCATCGAA TACATGAGCA ATGGTGTTTT TGATATATCA 33033 | || ||| | || | | | ||| || || || TATGCTTT-T GCATAAAT-T ATT-ATTCAA AAC....... .......... .......... 151 CATATTGATA TTGATTCAAA ATATCATCGT CAAAGATATG CTACATTACT TTGGAATTAT 33093 .......... .......... .......... .......... .......... .......... 151 GGAAAATCAA AGAATGATGA AGGCGCAATC AATGAAAGTG AAGTTAAAGG CACAAATGCT 33153 .......... .......... .......... .......... .......... .......... 151 AGCAAGAAGG GTGGACCTCG AACTCATAAA GAACAAGTTA TGGACACCAC CAATTATCCT 33213 .......... .......... .......... .......... .......... .......... 151 ACTCCAAAAT TTCGTATCAG GAAATAGAAA TCTTCATGGC ACAATGTACA TTTTTTTGAA 33273 .......... .......... .......... .......... .......... .......... 151 TGAATTGTTT TTTTAAAAAC TTATGAACAA TTTATGTATT TTTCCAGTTT TTTTATTATG 33333 .......... .......... .......... .......... .......... .......... 151 ACCACTGATG GTTTTATATA AATTATTACT GATTATTACT AAATGTGTCT CACTTTAACA 33393 .......... .......... .......... .......... .......... .......... 151 TATATGAACA CTGTATGAAT CATGTATGGA AATTATATGA ATTATGAATG TCATATTAAA 33453 .......... .......... .......... .......... .......... .......... 151 ATTTGATATA TAGTACATAG TAATGTTAAA TTATTCCATA AATTTATTTT GCATGAATAC 33513 |||| ||||| ||| | |||||| | .......... .......... .......... .....GCATA AATTTTATTT GTATGAATCC 176 TATACACTTT CAAATA-CAA ACAGAAACAG ATATTAATTA TATTACTGGT ATAAATAATG 33572 | || |||| ||||| ||| |||||||| ||| ||| ||||| |||| || |||| || TGTA-TCTTT CAAATNCCAA ACAGAAACCA TGGTTACTTA TATTATTGGT ATGAATACTG 235 TATGAAAAAT GTATGAATTA TATCATACAA TTATACATTA ATAAATGTGT ATCACCTTCT 33632 ||||| | | |||||||||| |||| TATGANNATT GTATGAATTA TATC...... .......... .......... .......... 259 TGCATACATT ATTCATACCA GTAATATACA TACAATTTGT TTCTGTTTGT ATTTTGAAAA 33692 .......... .......... .......... .......... .......... .......... 259 AATATATATT TTTCAAAATA CAAACAGAAA CAAATTGTAT GTATATTACT AGTATGAATA 33752 .......... .......... .......... .......... .......... .......... 259 ATGTATGAAA ACTGTATGAA TTATAACATA TTATATTTTA ATATTTATAA CATAAACATA 33812 ||| ||||| ||| |||| || || ||||| |||| .......... .......... .......ATA TTATACTTTG ATATGTAGAA CATAACCATA 292 CATTATTTTT TTATATGCAA GTATTGAAT- TTGTA-TAAA TGTATAAATT TTGTATGTA- 33869 ||||| || |||||||||| | ||| || | || | | | ||| | |||| CATTA---TT TTATATGCAA ATTTTGTATA TAGTCCTCAT TCAATATGCA ATAACTGTAT 349 GTCTCCATTA TGAATGCAAT A-ATTGAATA AATGTTATAT GATTATATGA -ATTATTATT 33927 | | | || ||||| || | || | || ||||| || | | | || | | GCATACTATA TGAATATTAT ATGACTTATT ATTGGTATAT TATACTTTCA TATACAAAAT 409 GTTAAAATTT GTTAATATAT GAACAGTTGT ATATACAACG TATGACATTT GTATGAAAAG 33987 ||| | | |||||||||| |||||||||| || ||||| | ||||| || ||||||||| AGTAACAAAT GTTAATATAT GAACAGTTGT ATGTACAATG TATGAACATT GTATGAAAAA 469 TAATATTATT CAAT--AAAA AAT-----A- TTTTATAACA ATGTAAACCC TCAAAAACAC 34039 |||||| ||| |||| |||| ||| | | | ||||| || |||| | |||||||||| TAATATGATT CAATAAAAAA AATAAAACAG GTGTCTAACA ATTTAAATAC TCAAAAACAC 529 ATATTTAACA GTACGACATC ATTGTTTTTG TACAGGATAA TTTGAACAAG TCTTCCTCTT 34099 | || ||||| ||| || ||| |||||||||| |||||||||| |||||||| | | ||||| || AGATGTAACA GTAGGAAATC ATTGTTTTTG TACAGGATAA TTTGAACATG TATTCCTTTT 589 GTGTCCAACC TGATGGCATC TACTGGATGT GCTTTTTGTC CTCTTGAATT TCACATCTGC 34159 |||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || TTGTCCAACT TGATGGCATC TACTGCATGT GCTTTTTGTC CTCTTGAATT TCACATCAGC 649 GAACCCCTTC CACCGTTCAA GTTTGGGTCT TCCTTCTGCT CTTTTTGGAC CAGGCGGCAT 34219 |||||||||| || |||||| ||||||||| ||| ||| | |||||||||| |||| ||||| GAACCCCTTC CAGTGTTCAA ATTTGGGTCT TCCCGCTGAT CTTTTTGGAC CAGGTGGCAT 709 CAATTTAGGA TTTGAAATAT AACTTGGTAT ATCCCATGTA CTCTCGCACG GGATAGGCTC 34279 || |||| | | |||||||| | |||||||| |||||||||| |||||||| | |||||||||| CATTTTAAGC TCTGAAATAT AGCTTGGTAT ATCCCATGTA CTCTCGCATG GGATAGGCTC 769 GACAAGAATG GCATAAGCAT CTTTGAAATT CTTGAGGCTA CAAAAGGAGA ACAGAAATCT 34339 ||| ||||| ||||||||| || ||||||| | AACAGGAATG ACATAAGCAT CTCTGAAATT C......... .......... .......... 800 GCTTCATGTA ACTTCCTGTA CCGGAGAACA GCAATTGCAT GACCACACGG TATCTTATAA 34399 .......... .......... .......... .......... .......... .......... 800 TGTTGAAATC TTTCGCAACT ACACATCCTT GTGTTCAAAT TTACTATGTA TTTCTTTGCT 34459 .......... .......... .......... .......... .......... .......... 800 CCTTCAGCTA CAGCATGCAG ATCAACAGTT GAAGGTATCA CCTGTGGAAA AAAAAATTTA 34519 .......... .......... .......... .......... .......... .......... 800 TACATGCTGC AGATTAGTAT GAATTAAAAA TACAATACAG TGAAACACAT ACCCTCATAT 34579 .......... .......... .......... .......... .......... .......... 800 TGCACGACAA CGTAATACTT TTCTGTAGAT AAATATCATA ATTTTTGTCA AATTAGATGT 34639 .......... .......... .......... .......... .......... .......... 800 AGTCTTATCA GCCTCCTCAT TATGCTTGTG AATTCACCTA TGAATTAAAA TTACATTCAG 34699 .......... .......... .......... .......... .......... .......... 800 TGCATCCCAT AATAAAATTA TAAATTTATT TATACATAAT TAATACACAC TTCATACACA 34759 ||||| ||| |||||||| || || | | .......... .......... .......... .ATACACAAT CTATACACAC TTACTATATA 829 ATT 34762 ||| ATT 832 hqPGS_C01HBa0216G16.1+_SGN-U346995- (33489 33596,33780 34310,34731 34762) ******************************************************************************** EST sequence 1 +strand 2092 n (File: SGN-U313960+) 1 AAAATCAAAT CAAGTAGTAT CACAAACCTG CAAAGTTCTC CAAGAATTCT TCTAAATTAC 61 TTCAACCACT GATCAATTCA ATGGCAGACA TAATATCAAA TGTGTTCAAT GAAAACGATG 121 AGTTTAGCGC TCCCATACTA TCAGACAACG AGTGCGCTGA GGAACTTCAA TACCAAGAGG 181 TTCTTGCAGC CTCTTTAGAA ATCTTCAATC TTCACATGTC AACCACACAA ATCGAAGAAT 241 CCCCTGAATC ATCCCAAGGT TTTTGTGAAA TTTGTATGGA GACAAAAGCT ACAAATGAAA 301 TGTTCAAACT CGAAAATTGT TCTCGTCACT CATTCTGTAC TGATTGCATA GCGCAATATG 361 TCCAGTTCAT GATTCAAGAC CATATTTTCT CAGTAACTTG CCCTGGTTTG AAATGTTGCG 421 CGACAATTGA ACCTGTTTAT TGTAAATCCA TCATCCCTGA AAATGTATTC GAAAAATGGC 481 AAGGGGGATT GAGTGAGTCT TCTCTTCTTG AGTGCGAAAA GTTTTACTGT CCTTACAAAG 541 ATTGTTCAGA GCTGCTGATT TATGATCATG ATCAAGGCAT CATTGAGTGT ATATGTCCTG 601 TATGCCACAG GCTGCTATGC GCGGCGTGTG GCGTCCCTTG GCATACTGGA CTTGATTGTG 661 ACAAGTTTCA AAATGATGAA AAAAACAGAG AAGATGATTT AAAAGTTGAG GAACTTGCTA 721 GCAGCTCAAA ATGGATGAAA TGCCCTCACT GCAAACATAT TGTGCAGAAA GCTGATGGTT 781 GTATACACAT AACCTGCTGG TGTGGATCTC AATTTTGCTA TATATGTGGA GAAACATGGA 841 GTGAAAACCA TTGGAGATGT CAAATTAGTG AATGATACCA GATTGCTTCT AAAGAACTGG 901 GAAGATTGAT AAAAGGCTAA ATAATTCACC TAATTTTAAA AAATAAAAAT AATACTCCAC 961 TCACTTTTAA GATGATAAAT ATCAAGTTAT AAACATACTT TTTGATAATA AACTACTTAA 1021 AGCATATTAT TATCAAGTTA TACCATATAA AGAAAAAATA TATTATTCTC ATTAATTATT 1081 TAAATAATAA TTTATTTATT TAAATAATTA CATTTATTAC TCAGTTACCT TTTTTAAATC 1141 AATCTATTTA AATAAATTAA TTTTTTAAAT TATCTTTTTT AAACCAAATT ATTTGATTAT 1201 ATTATTTTTT TTAAGTTACC TTTTTTAAAC AAAACTCTTT AACTATTATA AATTAAATTA 1261 AACATTATAT AGTTACCTTT TAAAAAAATT ACAAAATACT TAGGGATTTT ATCATTCTAT 1321 AATAACTATC CACCACTATC TAAACCAATA CCAGTTTTTT TTAAAACCGT CACACGCTAT 1381 ATTTATAAAA AAAAAATTCA TCTTCCCCAA ATATGTTGTT CTTCCCTAAA TCCTCACCAA 1441 ATCTTCTTTA TTTCGCACGC CTAACATTAA TCTTCACCAA CATTAGCTGT TTTGCTGAAA 1501 AATCTACAAC ATTAACATTC TTCTTCACCA AAATCTACTG TTTTGGTCAA TAATCTTTCA 1561 AATTTGCACT CAAAAATCTG TATAATATCG AAGAGAGGCA ATGAAACCCC GCGTAAAAGT 1621 AGAAGGTTGA ACGATGAAGC AAGATCTGAG GAATTTCATG CTCCATCTTT CAACATTTTG 1681 TCTCAAATAC AAACTCAACC TTCATCTACA AAAGAAAAAT CTAGAACAGA AAAATCAAAA 1741 TGAAAAAAAA AACAAAACAA AGAGCCAAAG GAAATCGAGA AGAAGAGAAA AGAGAAAGAA 1801 AAGTAATCCG TAGATGAATC TTGAAAGAAG GGTGGACCTC GAACTCATAA AGAACAAGTT 1861 ATGGACACCA CCAATTATCC TACTTCAAAA TTTCGTAACA GAAAGTAGAA ATTTTCATCG 1921 CACATTGTAC ATTTTTTTGA ATGACATGTT TTTTTAACTT ATGAACTATT TATGTAATTT 1981 TCCAGTTTTT ATTATGAATA CTTGATGGTT TTATATAAAT TATCAATGAA TATTACTAAT 2041 TATTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 20226 to 35228): Exon 1 24269 24288 ( 20 n); cDNA 859 878 ( 20 n); score: 0.750 Intron 1 24289 26432 (2144 n); Pd: 0.000 (s: 0), Pa: 0.574 (s: 0.53) Exon 2 26433 26480 ( 48 n); cDNA 879 926 ( 48 n); score: 0.531 Intron 2 26481 30067 (3587 n); Pd: 0.720 (s: 0.53), Pa: 0.534 (s: 0) Exon 3 30068 30083 ( 16 n); cDNA 927 942 ( 16 n); score: 0.812 Intron 3 30084 31581 (1498 n); Pd: 0.673 (s: 0), Pa: 0.000 (s: 0.92) Exon 4 31582 32429 ( 848 n); cDNA 943 1822 ( 880 n); score: 0.634 Intron 4 32430 33154 ( 725 n); Pd: 0.000 (s: 0.81), Pa: 0.000 (s: 0.98) Exon 5 33155 33375 ( 221 n); cDNA 1823 2039 ( 217 n); score: 0.889 PPA cDNA 2045 2092 MATCH C01HBa0216G16.1+ SGN-U313960+ 0.687 1153 0.551 C PGS_C01HBa0216G16.1+_SGN-U313960+ (24269 24288,26433 26480,30068 30083,31582 32429,33155 33375) Alignment (genomic DNA sequence = upper lines): GTCAAATAAG TGAAAAAAAT GTTGCAGCGC ACATAATTTC ACTAGATTGA CGCTTTGAAA 24328 ||||||| || |||| | | GTCAAATTAG TGAATGATAC .......... .......... .......... .......... 878 TACACTCGAA AATCCAACAA TGGCAATGAG GCAAAGCTAA ATAGCTACCC GAAGAAGTCA 24388 .......... .......... .......... .......... .......... .......... 878 TAATTGAAAT ACTCTACCGC CTCCCGGTAA AGCTAAATAT AATGCCTATC AAAGCACTGG 24448 .......... .......... .......... .......... .......... .......... 878 CGCAATTTTC TCTCAGACCT CCACGCCCAT AGACAAGAAT AGAAACTCAG TTAGCGTGGC 24508 .......... .......... .......... .......... .......... .......... 878 CAACTTCATA CTTATCCTCG AAGATGAATT CATCGATAGC ATTTCAATAA AGGTTAATTT 24568 .......... .......... .......... .......... .......... .......... 878 TCAGCTGCTC ATACATTTCT GTAGCTGGGT TGATAGGGAA TATATTCAAT TTCCTAAATT 24628 .......... .......... .......... .......... .......... .......... 878 TCCTGTTTTT TGGGCTCTTC CTCCTAAAAC TAGCGTATGG TTTAGGTTAT GATATTGTTA 24688 .......... .......... .......... .......... .......... .......... 878 GTGATGATTA TAAGGTGGTT TATCTTTCAT ATCGTGATTC TTTTATGTGA ACCTCTCCCT 24748 .......... .......... .......... .......... .......... .......... 878 ACTTAGTGTG TTGTAATTTT TTTGTGTGCA TTCTATAGTG TAACTTGTAT GCACTTATAA 24808 .......... .......... .......... .......... .......... .......... 878 ATATATATAA TAGTGCCTGT CATGGGAAGG AAGGTTAAAT TGTTGGGTAA ATTCTCTAAA 24868 .......... .......... .......... .......... .......... .......... 878 ACAGAGGGGA TAAATTATGT AAAAATTATA AACTAAGTGT TGTAAAAAGA CATTCTTTTA 24928 .......... .......... .......... .......... .......... .......... 878 TAAATGGACC ACAAAAAAAA GCAAGACATA AAAATTTATG AAGTACCAAA ACAAAAGCTT 24988 .......... .......... .......... .......... .......... .......... 878 ATTCCATTTC ATGATGAACA TATTGAAAGA TAAAATTAAG ATCAAAACTT AATCATCAAT 25048 .......... .......... .......... .......... .......... .......... 878 ATGGAATACT TAACTCTATA AATACCAAAT TAATTTATTG AACTTTAAAT AAAGCAAGAA 25108 .......... .......... .......... .......... .......... .......... 878 AAACTTATTC ACCGGATCCA GATGACCCTT CGCCGAAAAC GGACGAAGTG CTTTCCCTAG 25168 .......... .......... .......... .......... .......... .......... 878 CTCTTAAAGG AGCGAGCGCA ATTCCAATGG TTTTATATGG GAATTCAATA CCACACTCCA 25228 .......... .......... .......... .......... .......... .......... 878 TAAATTGGCT TGCCAGTTTT TCAACGTTTT TATCCGCAGC CTCCAAGGAC TCGCACAAGA 25288 .......... .......... .......... .......... .......... .......... 878 TCTTAAGGTC AAAAAAACTA AGTTTTTCAT TTGAAGGTTC TGTCCTCAAT GCTTGAAGTG 25348 .......... .......... .......... .......... .......... .......... 878 CTTGCCCATG TTTTCTTTCT CTTTCGAGTG ATCTCTCCAA CTTGTTCATC TTTTTATTGA 25408 .......... .......... .......... .......... .......... .......... 878 GCTCATCAAT ATTGGCATTT TGATGAGCTA CAATGATGGG GTTAGGATCA TCAGTTTCAG 25468 .......... .......... .......... .......... .......... .......... 878 GTGGAGGATT CTCTCTGACA AATTTATCCA CAATTGACTC GACGGAAGGG TGTCCACATG 25528 .......... .......... .......... .......... .......... .......... 878 CGTATACTTT GTTGCTAGGA GAAAAAGCTA CAATAGCAAC ATTAGAACCA CACAAAGTCG 25588 .......... .......... .......... .......... .......... .......... 878 AGAGCTCACT TGCCTTCTTA AAAAGGCCAG CACGTCTTTT TGAGAATGTT ACTTGTAAGT 25648 .......... .......... .......... .......... .......... .......... 878 TGGTTTGATT TTGAATCTTC GCAATTTCAA TTTTTTTGCG GCCATTAGGT TTTCTCATGG 25708 .......... .......... .......... .......... .......... .......... 878 CTATGCTTTT GATTTGAGAA TGTAAAAAAA ATGTGATGTT GAGTTTTTGT TTTAAAGATG 25768 .......... .......... .......... .......... .......... .......... 878 TATTTATAAA GATAGAACCA CTATATTATT TGATGAAGAA TGAATTCAAT AACAAAAAAG 25828 .......... .......... .......... .......... .......... .......... 878 TAAAAATATT TATGATGATA TTCTTTATTT GGTAGGATTT GACCCAAATC ATAATATTAA 25888 .......... .......... .......... .......... .......... .......... 878 TTAAATTTTT GTTCATTGTA TCTTTGTCAA AATCCATAAC TAAAGTATAT GTTTTAGCAA 25948 .......... .......... .......... .......... .......... .......... 878 AGTTAATATG TAAATCAGTT TCTAGGATAA AGGAGGATCT TTCTGCCTAC TTTATGAAAA 26008 .......... .......... .......... .......... .......... .......... 878 TTTCAAACAT ATTTCATCTT AAGTGAAATA TTATAAGAAT GTAACTAGAG TTGAACTGAA 26068 .......... .......... .......... .......... .......... .......... 878 ATTATAAGGA TGCTTTTGGT AAAAGTAAAT AAATACTGAA ATGCCAATAA AGCCAAATTG 26128 .......... .......... .......... .......... .......... .......... 878 ATAATGTACT ATTAAATATT TGCACAAGAA TAAATCTACT TTCGTGGATA TGTTCTAGTG 26188 .......... .......... .......... .......... .......... .......... 878 CTTCTATTAA ATGTAATGTT GTGCTTATGC AGAGGCCTGA ATCTCTGTGT ATTTTGATCG 26248 .......... .......... .......... .......... .......... .......... 878 CAAGGGTGTT ACTCCTTCAT TATGATGTTA TAAAGTTGTT ACGATTTCAA ATATGAAGAA 26308 .......... .......... .......... .......... .......... .......... 878 AGATCATCAT GATAGGAGAG TTTTCGAGCA AGAAGACTTG CATTTTTGAC TCTGTATATA 26368 .......... .......... .......... .......... .......... .......... 878 TCAGTTGAGT TTCTCAATAT TAGATGAGTA GATGATCTGA GATGAGCAAC TAAAAATGTT 26428 .......... .......... .......... .......... .......... .......... 878 ACAGACCACT GCTGCTACTA GAACAAGGCT GATCAACTAA A-GCTGGTAC ATTGTACGAG 26487 | | ||| ||| | |||| || ||| | || | ||| ||| ....CAGATT GCTTCTA-AA GAACTGGGAA GATTGATAAA AGGCTAAATA ATT....... 926 TTAAAAATTA ACCTACAATT GGCTACCTTG AATCATGTAT AGTACTATAT ATCGAGGGAT 26547 .......... .......... .......... .......... .......... .......... 926 TGCATTTTAG TTGCAATAAA TGATGGAATG ATAACTCCGA ATAATATATT ATATCTTACT 26607 .......... .......... .......... .......... .......... .......... 926 ACATGAAAAT AAAGAGTCAT TGATGTGCAT GACAGGTAAC TGATTCTATC TTCACTCTGA 26667 .......... .......... .......... .......... .......... .......... 926 CATCCTTCAC AGAACATTCT ATTGATCTTT GTTTCATTTA CTAGATGATG TTAACCGTGC 26727 .......... .......... .......... .......... .......... .......... 926 ACGCACTGGC CCAATTTTTT GATGAAGTAT TAGTGTCAAG TTGTATTTGA ATGTAGTCTT 26787 .......... .......... .......... .......... .......... .......... 926 ATGAGTTATC ATCACTTATG TGGTGATTTA GTAATCCAGA GAGTACTTTT TTCACAGTAA 26847 .......... .......... .......... .......... .......... .......... 926 ATAAAACACC TAAAGGTGGA TGTCCTTTAC CCTTATTCTT AGTTGATGAT AACATGTCAT 26907 .......... .......... .......... .......... .......... .......... 926 CAACTCAATC TTTGAAAACA CCATGACACC CTGAAGTTGA TCAAACAAGT CATTGATACG 26967 .......... .......... .......... .......... .......... .......... 926 AGGCATATGG TACTGATTCT TGCTGACTCT AATTGATTCA CATATGCATA GACCCATCCT 27027 .......... .......... .......... .......... .......... .......... 926 TCTTCTTCAT AAACAGTATG TGATCACCCT AAGGTGATAC AATCGTTCTA ATAAAGCCCT 27087 .......... .......... .......... .......... .......... .......... 926 TACTCAAAAG TTCTTGAAGC TGAATATTGA GCTCTTTAAG CTAAGAGGTT CTATACAAGA 27147 .......... .......... .......... .......... .......... .......... 926 CTGTGGAATA GAAATAGAAT GAGTGATTGA GTCAAGGTTA ATAGATAAAT CAATATCACG 27207 .......... .......... .......... .......... .......... .......... 926 TTCAGGGTGA AGGCCAAGTA GGTCAGTAGA AAATACATCG ATAAACTCTC GCACAACAGG 27267 .......... .......... .......... .......... .......... .......... 926 AAAAAAATCA GTTATAGGTC CCTCCTTGCT AAAATCACCA ATAAAAGCCA AATAAGCCGA 27327 .......... .......... .......... .......... .......... .......... 926 AACCCCGCTA GATACTAAGC TCTGAGCCCG AACATATAAA GTAATCTCTG TTGATGGGCG 27387 .......... .......... .......... .......... .......... .......... 926 GCTACAAGGA CCTTACAACA CAAACGGGGG AATACTAGGC ATGACTAAGA TAACAGTCTT 27447 .......... .......... .......... .......... .......... .......... 926 GGCAAAGCAC TCTTGGACCG CACATAAGAA GGATAACCGG TTTATGCCCA TAATAACATC 27507 .......... .......... .......... .......... .......... .......... 926 AAAATTAAGC ATATAAGGAA AAATAAGGTC CGCTTGCTCT TGCATGTTGC ACTTATGAAT 27567 .......... .......... .......... .......... .......... .......... 926 TGTCACAAAC CCGATCCACT AATAAAGAAT CAACATGAGA GTCGATACAG GCAGCAACAT 27627 .......... .......... .......... .......... .......... .......... 926 TTACATGGCT CAAAAATGCA ATCTAATCGA GGAGAGAAAT AAACATATAC GTACGAATAA 27687 .......... .......... .......... .......... .......... .......... 926 GTAGATCTTG AATCAAATAA AGTAAAAGTC GATCATTAAA AAATTGAGAT CGTACTTGAA 27747 .......... .......... .......... .......... .......... .......... 926 ATCACTTAAT CTAAAGCCTC ACAGTCCGAC CTAGCAGGAA CCACATAAAA ATGCCCACAT 27807 .......... .......... .......... .......... .......... .......... 926 CTTCCAAAAA AGTGGAGTCC AACTCTTTCT CCTGCTCTAC CTACCTGAGT ACTTCCTCAA 27867 .......... .......... .......... .......... .......... .......... 926 GCACTTGGGG GACCACCCTT GTCCCTAAGC ATCGCCTCTA CTCGTAGGTG CTACAACCCT 27927 .......... .......... .......... .......... .......... .......... 926 ACACTTGGGG CAATCTCAGA CGTAGTGTCC AACCTCGCAA CGATTAAAAC AACCTCGATC 27987 .......... .......... .......... .......... .......... .......... 926 ACCCCAAGTG TAATACCTTG GATGTGCATA ACTCAAATTT AGAAAGTGCA AAAAAATAAT 28047 .......... .......... .......... .......... .......... .......... 926 TGAAGTTTAT AGCTTTTTGG TACTTAGGAA ATCATGTTAC GGATCATAGA ATGTATTACA 28107 .......... .......... .......... .......... .......... .......... 926 GCTCGAGGAA ACCATCCATG GCTGATGCTT TAGAAATCAG GCTAAGTATC ACAGGGAATA 28167 .......... .......... .......... .......... .......... .......... 926 CAAGCAAGTT TACGGGTAAT ACATGGGTTT ACATGTTGTA GATGTGTCTT AATCAGTTGG 28227 .......... .......... .......... .......... .......... .......... 926 GAAGGAATTA CATATTATAG ATGTTTATAT GGGTCATGAA TAGGCTCATG GAAATAATCC 28287 .......... .......... .......... .......... .......... .......... 926 CTGAGATTTC ATAACATCGG GATGTCATGT ACGAGTCAAT AGTACCGTTC GCTAAAGGAA 28347 .......... .......... .......... .......... .......... .......... 926 CCACGAGTCG TAGTTTGGTC TTGTAGAGTC ATACTTCAGA ATTGGGATAT TTAGTACATT 28407 .......... .......... .......... .......... .......... .......... 926 ATCTTCTATG GGAAGGTAGT ATGAGTTATA CAAAGAACTA CATGTCGTAA AATGCTTTCT 28467 .......... .......... .......... .......... .......... .......... 926 TAGTTCATCT TTAGAGACTT GGTGATTTTT CAGCAACTTA ATTCAATGAG TGGACATTAT 28527 .......... .......... .......... .......... .......... .......... 926 GATCGTAAAA AGGGTTTGTG GTTTAGAGTT CTGAAACTTA GGATTTTAAG TTGATTACTA 28587 .......... .......... .......... .......... .......... .......... 926 TAGACGGATT CTACGGTCCG TAGATTGTCT TGCTAAGCCT ATTCAATAGT TTTATTTCAC 28647 .......... .......... .......... .......... .......... .......... 926 GATTAATTAA GTATCTTCTC ACTCTTTCAA TACTTATACT ACCCCATTCA AGATTATTTT 28707 .......... .......... .......... .......... .......... .......... 926 GAAGACTATA ACTAATACGT AAAACCCCTA ACTATACCAT TTACTCCCAT ATATTCTCCC 28767 .......... .......... .......... .......... .......... .......... 926 AAATTCCAAT TCCCTCTTCC TCAAGTCTTC TCCCTCAAGC AATCCAGGGC TTCATGATCT 28827 .......... .......... .......... .......... .......... .......... 926 CAAGTCTTCA TTGAAGGATT TTACCTAGGA TTTCTATGTG GGAACTTTAT CACTAGGTCC 28887 .......... .......... .......... .......... .......... .......... 926 TTTTTCACCC ATTGAGTCCC AAAAAAACCT TAATTTCTTA ATTTATTATC CTATCAAATT 28947 .......... .......... .......... .......... .......... .......... 926 TTAGGGTTTC ATGATTTCTT ATTACTTTTT ATTGAATTTC AGATTCTTCT TCAGGATTGA 29007 .......... .......... .......... .......... .......... .......... 926 TCTTATAATG CATGAATTTG TTATAAGTTA ATTATCTCAA TGGTATTATT ATGAACGCAT 29067 .......... .......... .......... .......... .......... .......... 926 GACATGCAAG TATTTTGATG ATCACAACTA TGCTATTTAC TGGATCTAGG ACGACGTGTT 29127 .......... .......... .......... .......... .......... .......... 926 TTCCCTAACT TTTAAAGGAG CAAGCTCACT TCCAATGGTT TGACATGGAA ATTCAATACC 29187 .......... .......... .......... .......... .......... .......... 926 ACACTCCGTG AGTTGTCTTG CTAATATTTC AAATTCTTTA TCCACATCTT CCAAGGACTC 29247 .......... .......... .......... .......... .......... .......... 926 GCACGGGATT TTAAAGTGAA AGATGTTAAG TTTTTTATTT GAATGTTTTG TCCTTAAATG 29307 .......... .......... .......... .......... .......... .......... 926 CTTGAAGTGA TTGTCCATGT TTTCTTTTTA TTTCGAGTTG TCTCTCCAAC TTTTTCAGCT 29367 .......... .......... .......... .......... .......... .......... 926 TTTTGTTGAT CTCACTAACA TTGACATTTT GATGATCTAC AAGGATGGGT TAGGATCATT 29427 .......... .......... .......... .......... .......... .......... 926 ATTGTTGGGT GTAGGATTTT CTCCGAGAAA TCTAACCACA ATTAATTGAG AATGTTACTT 29487 .......... .......... .......... .......... .......... .......... 926 GTAAGTTGGT TTGATTTTGA TTCCATGCAA CTTCAATTCT TCTGTGGCAA TTAGGTCTTC 29547 .......... .......... .......... .......... .......... .......... 926 TCATGATTAA GCTTTTGATA GATTGTAAGA AACTGTGATG TTGAGTGTTT GTTTGAATTA 29607 .......... .......... .......... .......... .......... .......... 926 TATACTTATG GCGATAGAAT TATCATATTA TTTGATCAAA ATGAACTCAA ATAACAAAAG 29667 .......... .......... .......... .......... .......... .......... 926 AGTAAAAACA TTTATGATGA TTCCTTATTC GGTAAGATTT GACCCAAATC ATAATATTAT 29727 .......... .......... .......... .......... .......... .......... 926 GAACTTCCTT TTTTGTTTCA TTCTATCTTT GTCACTCCGA TCTATACAAA TTACAAATAA 29787 .......... .......... .......... .......... .......... .......... 926 CATAATTCTT TTTAGATTAA TTTATTTTAT TGAATTATTG GAAAAGTTTT TGTTGTGTCA 29847 .......... .......... .......... .......... .......... .......... 926 TTCTTTTCTG AGTTAATATG TAAATTGATG ATAGTCACTG AGGTTTTATA AAATTGTAGT 29907 .......... .......... .......... .......... .......... .......... 926 TGTATACTTT TCTCTTGTTC AACTATGTAT ATTTCCTAAG AGAACATAAA GTCATCATTG 29967 .......... .......... .......... .......... .......... .......... 926 AAGTTGTCCC GGATTTTTAA AAAGACATCT TAACTTTGTA ACTGTCCTAT TACCCACTAA 30027 .......... .......... .......... .......... .......... .......... 926 ACAATTTTGA ACGTATGTTA TTATATCATT TTTCGATTAG CCCCAAATTT TAAGAAGCAA 30087 | || ||||| ||| || .......... .......... .......... .......... CACCTAATTT TAAAAA.... 942 GTGTGTTCAC ACACCAATCA TAACATGACA CGTGTTAATG TAAAAAAAAA TCATTTTATG 30147 .......... .......... .......... .......... .......... .......... 942 TTTTTCTTTT ATTTTTTCTT TATTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG 30207 .......... .......... .......... .......... .......... .......... 942 TCTCTGTCTC TCTCTCTCTC TTTAATTTTA ATTTTGATTT ATCTTAAATT TCATTTCATC 30267 .......... .......... .......... .......... .......... .......... 942 TTCCACCTCT CACCTCTAAG TAATTCATCC CTCCATTTTC TTTTTTTTTT CTTCACCTCC 30327 .......... .......... .......... .......... .......... .......... 942 CATCCCCCAT GTCAAATAAA ATCTCACTCC CATTTTTTTA TTTTCTTTTT CTTCTTTTTC 30387 .......... .......... .......... .......... .......... .......... 942 TCCGGTCAAA TTCTTTATAG AATTAATTAT ATTATTTAGA ATTTACTAAA ATATTAATAA 30447 .......... .......... .......... .......... .......... .......... 942 CAAAATTAAT TATTATTCCA AGAAAATTTA AAATATTGAA GAATCATGAA CTACTCATTT 30507 .......... .......... .......... .......... .......... .......... 942 TCTTATAAAT TCAAAATTAG AAATCATAAT TTTAAAAGAA TCAATTAATC CCCCAAAAAT 30567 .......... .......... .......... .......... .......... .......... 942 TGAAAGAACT TAATTGAAAT TGGATAAGAA AAAACTATAT GATACTTCCT AATCATCTCA 30627 .......... .......... .......... .......... .......... .......... 942 CTTCCTAATC ATCCCATTAA TTTATCTCAT TTTCGTATAA CTTCAAAACT AGAAATAATA 30687 .......... .......... .......... .......... .......... .......... 942 ATTTTGAAAG AATCATAATT CTCCTAAAAT TGAAAAATTT TAATTGAAAT TTGGATAAAA 30747 .......... .......... .......... .......... .......... .......... 942 TAAACTAAAT AATACCTACT AATCATCTTG AAATCTAATG GGTTTATCAA ATTGTTAAAA 30807 .......... .......... .......... .......... .......... .......... 942 TGTAATAAAC TATTTAGATA TAGTTTTAAG ATTGAAGAGA GTTAAATTAA TAGTAGTAAA 30867 .......... .......... .......... .......... .......... .......... 942 AAGGGGAAAC AGAGTTGTGG TAACAAGAGA CATTTAAATT GAGAAGTTTC AATGAAGATG 30927 .......... .......... .......... .......... .......... .......... 942 AAAATGAATT TTTGAAGAAG AAGGAAGAAA GAAAAAGAAA AAATTAATAA GGACAAAAAG 30987 .......... .......... .......... .......... .......... .......... 942 TTTAAATAAT AAGAAAAACA AGAAAATGTT TTTAATAGCA AAATACTTGC AAAAATAAAA 31047 .......... .......... .......... .......... .......... .......... 942 TTATATTCAT TTTTTTAGTT TGTTCATGCT CTTTAAGAGA GTGCATACAC TCTGTATGCC 31107 .......... .......... .......... .......... .......... .......... 942 AGGTGGACAA AAAATGATGT AATAATATCA ATTCAGAGTA GTTTAGGGGG GTAATAGGAC 31167 .......... .......... .......... .......... .......... .......... 942 GCTTGCATAG TTTAAGTGTC TTTTTGAAAA ATCAGGACAA TTTCATGTGT CACTTTATGT 31227 .......... .......... .......... .......... .......... .......... 942 CTTTTCTCTA TTTCATAATG TAGACATGCT TAATAAATAC CTTCCAATAT TAACTTCATA 31287 .......... .......... .......... .......... .......... .......... 942 ATATAAAAAT ATTGAATTTC TAACTTATAT TGACGTACAA TTAGGTTTAA GAACTTCAGT 31347 .......... .......... .......... .......... .......... .......... 942 TTAAAATTTT AAGTTATTTT TATGTGTTCG AAAGCCTTTG CAACTCGTAA AATATACTGT 31407 .......... .......... .......... .......... .......... .......... 942 AACTTATGAC ATGTTGAAGA ATACTGTAAT AAGAAAATCC AAATCCCAAC ACAATTTAAC 31467 .......... .......... .......... .......... .......... .......... 942 ATGTATAAAC CACGTTAGAG TATTCTCATA CACTTAATAG TTTATTATAA AATTTTAAAA 31527 .......... .......... .......... .......... .......... .......... 942 CGATACACGA ATTTGTTTCT CTTTTTTGAT CCAACAAACT AATTAATATT TGAAATAAAA 31587 |||||| .......... .......... .......... .......... .......... ....ATAAAA 948 ATAATACTAC ACACACATTT AAGATGTTAA ATATCAAGTT ATAAACAAAC TTCTTAATAA 31647 |||||||| | || ||| ||| |||||| ||| |||||||||| ||||||| || || || |||| ATAATACTCC ACTCACTTTT AAGATGATAA ATATCAAGTT ATAAACATAC TTTTTGATAA 1008 TAAACTACTT ATAGCATATT ATTATCTAGT TATAGCATAT CAAGAAAAAA TATATTATTC 31707 |||||||||| | |||||||| |||||| ||| |||| ||||| ||||||||| |||||||||| TAAACTACTT AAAGCATATT ATTATCAAGT TATACCATAT AAAGAAAAAA TATATTATTC 1068 TCATTAATTT TTTAAAATAA TAATTAACTT ATTTAAATAA TTACATTTAT TATTCAATTA 31767 ||||||||| ||| |||||| ||||| | || |||||||||| |||||||||| || ||| ||| TCATTAATTA TTT-AAATAA TAATTTATTT ATTTAAATAA TTACATTTAT TACTCAGTTA 1127 CCTTATTTAA ACCAATGTAT TTAATTAAAT TTATTATTTT AAGTTACCTT TTTAAAACAA 31827 |||| ||||| | |||| ||| |||| ||||| | ||| |||| || ||| ||| ||| |||| | CCTTTTTTAA ATCAATCTAT TTAAATAAAT TAATT-TTTT AAATTATCTT TTTTAAACCA 1186 AACT-CTT-A --AT-TAATG TAATTTAAAT TAAATATTAT ATAGTTACCT TTTTTAAGA- 31881 || | || | || | || | ||||| | || | || | | | | || ||| | | AATTATTTGA TTATATTATT TTTTTTAAGT TACCTTTTTT AAACAAAACT CTTTAACTAT 1246 TA-ACTACAA AATAGGAATT -T-TA-TCAA TATCTAAAAC AATTACTTTA AAACTGTAAA 31937 || | || | || ||| | || | | | ||||| |||||| | | ||| TATAAATTAA ATTAAACATT ATATAGTTAC CTTTTAAAAA AATTAC-AAA ATACTTAGGG 1305 ACGTTATC-- TAAACAAAAA ATA-ACAATA ATTTATATTC C-CTA--AAT TTTTGTT-CT 31990 | ||||| | | || || || || | | | || | | || | | |||| || ATTTTATCAT TCTATAATAA CTATCCACCA CTATCTAAAC CAATACCAGT TTTTTTTAAA 1365 TCC-CCA-AA TC-CT-TTCA -AAATCATTA CCTTTGCACG CCTATCAAAA TTATTCACCA 32045 || || | | | || | ||| | | | | || | | || ||| | ACCGTCACAC GCTATATTTA TAAAAAAAAA ATTCATCTTC CCCAAATATG TTGTTCTTCC 1425 AATTTTGCAC GCCTAA-ATT -TTTATTT-T CA--CC-AAA ATTTCAC-TC AAAATCGCT- 32097 | | | || || || ||||||| || || || ||| | || | | | | CTAAATCCTC ACCAAATCTT CTTTATTTCG CACGCCTAAC ATTAATCTTC ACCAACATTA 1485 TCTCTCTT-A AGAGTCTTCT TCAAGAATTC TCAAATATTT GCATTCAAAT CTTAATTTTT 32156 || | || || ||| ||| ||| || | | || |||| | || | ||| GCTGTTTTGC TGAAAAATCT ACAA-CATTA ACATTCTTCT TCACCAAAAT C-TACTGTTT 1543 AGCACTCAAA TC-TTCAACT CTTGCGCTAA ACAAACCGTA CAATGTCGAA AAGAGGCAAT 32215 | | || || ||||| | |||| || | | || | ||| ||| ||||| ||||||||| TGGTCAATAA TCTTTCAAAT -TTGCACTCA AAAATCTGTA TAATATCGAA GAGAGGCAAT 1602 GAAACACCGA GAAAAAGTAG AAGATTGAAT GATGAAACAA GCTCAGACGA TTTTCATGCT 32275 ||||| ||| | |||||||| ||| ||||| |||||| ||| | || || || ||||||||| GAAACCCCGC GTAAAAGTAG AAGGTTGAAC GATGAAGCAA GATCTGAGGA ATTTCATGCT 1662 CCATCTTTCA AAATTTTATC ACAAACACAA TCTCAACCTT CATCTGTTAA AGTTAAATCT 32335 |||||||||| | ||||| || |||| |||| ||||||||| ||||| || || |||||| CCATCTTTCA ACATTTTGTC TCAAATACAA ACTCAACCTT CATCTACAAA AGAAAAATCT 1722 AGATCAGGGA AATC-AAA-- AATAGAAAGA -AAAA-AAAC ATCCAAAGGA AA-CGAGAAG 32389 ||| ||| | |||| ||| || | ||| | |||| ||| | |||||||| || ||||||| AGAACAGAAA AATCAAAATG AAAAAAAAAA CAAAACAAAG AGCCAAAGGA AATCGAGAAG 1782 AAGGGAAAAG GGAAAGAAAA GAAAAAAGTA GATGAATCTG AGAAAAGGAC GAAAGAAAGA 32449 ||| |||||| ||||||||| | || ||| ||||||||| AAGAGAAAAG AGAAAGAAAA GTAATCCGTA GATGAATCTT .......... .......... 1822 GGAAAGAAGA GGAATGGAAA AGAAATCGAG GACTCATCAG ATCTGAATGT GATTTCGTAT 32509 .......... .......... .......... .......... .......... .......... 1822 AAGAGATGAT AAAATCAAAA TCCAAAAAAC CAAGAGCCTC TGAAATCGAT ACTTCACATT 32569 .......... .......... .......... .......... .......... .......... 1822 TACAAGAAGA AGAAGAAGCA GTTGAACCCA AAAAAAAAGT TCAAAGGTTA GTAAAAGTTA 32629 .......... .......... .......... .......... .......... .......... 1822 ATTTTTTAAA ACTTTTTTAT GTTCTGTTAT TTTTATTTTC TGTTATTTTG GTATAACATA 32689 .......... .......... .......... .......... .......... .......... 1822 GTTAATATAT AATTTTTGTG TATATAAATA ATGTATAAAT TGTGTATGAT TCACTGTATG 32749 .......... .......... .......... .......... .......... .......... 1822 AAATTACAAA TTTCTTCATA TTACAATATC AATTGCTGAA ACATGTATTT TTTATGTATG 32809 .......... .......... .......... .......... .......... .......... 1822 ATTCATTGTA TGAATTGTGT ATGATTCACT GTATGAATTG TGTATGATTC ACTGTATGAT 32869 .......... .......... .......... .......... .......... .......... 1822 TCGCTGTATA TATAAAATGT GTATGAAATG TATATGAATT GTGTATAAAT TTTTTTGTAT 32929 .......... .......... .......... .......... .......... .......... 1822 CAAGTTTTTT CATACAATTT TTTTTTCAAT TTATATACAG TGATTGTGGT TTATACACAT 32989 .......... .......... .......... .......... .......... .......... 1822 CTCTATTCAT CGAATACATG AGCAATGGTG TTTTTGATAT ATCACATATT GATATTGATT 33049 .......... .......... .......... .......... .......... .......... 1822 CAAAATATCA TCGTCAAAGA TATGCTACAT TACTTTGGAA TTATGGAAAA TCAAAGAATG 33109 .......... .......... .......... .......... .......... .......... 1822 ATGAAGGCGC AATCAATGAA AGTGAAGTTA AAGGCACAAA TGCTAGCAAG AAGGGTGGAC 33169 | ||| |||||||||| .......... .......... .......... .......... .....GAAAG AAGGGTGGAC 1837 CTCGAACTCA TAAAGAACAA GTTATGGACA CCACCAATTA TCCTACTCCA AAATTTCGTA 33229 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| CTCGAACTCA TAAAGAACAA GTTATGGACA CCACCAATTA TCCTACTTCA AAATTTCGTA 1897 TCAGGAAATA GAAATCTTCA TGGCACAATG TACATTTTTT TGAATGAATT GTTTTTTTAA 33289 ||| || || ||||| |||| | ||||| || |||||||||| ||||||| | |||||||| ACAGAAAGTA GAAATTTTCA TCGCACATTG TACATTTTTT TGAATGACAT GTTTTTTT-- 1955 AAACTTATGA ACAATTTATG TATTTTTCCA GTTTTTTTAT TATGACCAC- TGATGGTTTT 33348 ||||||||| || ||||||| || ||||||| | ||||||| ||||| || |||||||||| -AACTTATGA ACTATTTATG TAATTTTCCA G--TTTTTAT TATGAATACT TGATGGTTTT 2012 ATATAAATTA TTACTGATTA TTACTAA 33375 |||||||||| | | ||| || ||||||| ATATAAATTA TCAATGAATA TTACTAA 2039 hqPGS_C01HBa0216G16.1+_SGN-U313960+ (33155 33375) ******************************************************************************** EST sequence 21 +strand 833 n (File: SGN-U342371+) 1 AACTCAGATT TAATCCCTCC TTCCCCTCTT CTTTCCCCCA CTTTCTCCCC CCCTTATCTG 61 GAACTCCCCG CGGTGGCGGC CGCTCTCAAC TAGTGGATCC CCCGGTCTGC AGGTTCAACA 121 TATATTCTTG AAAATTTTGA TTTTTTTTTC ATCCTCTCTT TGATAGTGAA AAAATGGGTG 181 GATTTGAGAA ACAAGTTAAG GAAAGAGCAA AAGAGTTGAA GACATTTTTC AAAAAGGGAG 241 TGAAAATTGT TGGAGAATCT TGCAAGAAGG GTTGGCACAA GGTCAGACAC ATGAGGAGTT 301 GATTTTTTTA ATTTTTTTTT TTTGAAAATT TAGATGAAAA AGATTTATTC TTTGTTTTTT 361 TTTCCCCTTT ATAATTTTGT GATTTTTGAG GGGTTTTGGA ATTTGGGTTT GGGAATTGGG 421 ATAGAGTTGG TTACTATATT TGTGATTTGT AGCTAATTCG GGTGTCGAAT TGCAAACATT 481 TCTCTTTTGA ATTTTTTTTT TTGGTAGGGC TTGCAATTGT CTGAATTTGT GCTATTGGAA 541 GTGCTACCTT GGTATTAATT CATTTAAAAA AGCCAATTTG CAAGACAACA AAAGAGTTCT 601 CACTCCTATG TCCGTCTCTA ATGTTCTGAG TGTACACCAA GTTGATCTTA TTGCCCATGG 661 ATCTTTCTTA TGGACAATTC GCGACAAGTT ACAATATTTG TCCTTTACCA TACCTTACCT 721 TGTCTTTGTA AAAGTGAAGT GACGTGGCCA GAATTCCTTT CCAAAGTATA TTTTGCCCCA 781 TTTCCTATTT GAACCTTGAA GGTCTCTGAG GCATTTAAAG AGGTTTTTGA TAT Predicted gene structure (within gDNA segment 44794 to 35799): Exon 1 43799 43790 ( 10 n); cDNA 549 558 ( 10 n); score: 0.800 Intron 1 43789 37839 (5951 n); Pd: 0.000 (s: 0), Pa: 0.924 (s: 0.78) Exon 2 37838 37551 ( 288 n); cDNA 559 833 ( 275 n); score: 0.852 MATCH C01HBa0216G16.1- SGN-U342371+ 0.852 298 0.358 C PGS_C01HBa0216G16.1-_SGN-U342371+ (43799 43790,37838 37551) Alignment (genomic DNA sequence = upper lines): TTGGGAGTAA GCTTAGCACC GAGTTGGACT AGGGTTCACC ATATCCTCAT AGTCTTAGAA 43740 |||| | ||| TTGGTATTAA .......... .......... .......... .......... .......... 558 CTACATGCCC CAAAGGATCA TAAGTCCTCT CAGTGAGTAT CAGATTTAGT CATCACGACG 43680 .......... .......... .......... .......... .......... .......... 558 GTCATGCCTT TATACCCCGT GTAAGGTATA TTGGGTCCTC TAGATGAGAC ATATACATCA 43620 .......... .......... .......... .......... .......... .......... 558 TACACCACAA TTAGCTCGTG TGGTAGTTAT ATTGGTTAAT AGTAGCTCCC ATAGTCAAAC 43560 .......... .......... .......... .......... .......... .......... 558 TCTAGTGCAT TCGACCAACT TCTCAGTTTT ACTTCAGTAA TTAGTCTTAG AATGCTATGT 43500 .......... .......... .......... .......... .......... .......... 558 ACTTGGTCAT TGCATTCAAT TTAGTTCTAT TCAGTATATA TCAGTGTTCC CATCATGTAT 43440 .......... .......... .......... .......... .......... .......... 558 AGATTGCGTC ATTGCTCAGT TATGCTTTGT TCATTTTACA TGTTTGTTCG GCTTTTATCC 43380 .......... .......... .......... .......... .......... .......... 558 TATTATGCAT GCTCAATATT TTCCAATTAC TGACTCACGC TCTGCGTTAT ATCTTTTCAT 43320 .......... .......... .......... .......... .......... .......... 558 GATGTAGGTT TAGATCCTCA ACATACTCTA CGCTATATCT CCCAAACAAA GTTATTTTTA 43260 .......... .......... .......... .......... .......... .......... 558 TATCTTTACA TACAACCGAG TTATTATTGT ATTTTAAATA GATTGAGTTG TTATCTATTG 43200 .......... .......... .......... .......... .......... .......... 558 TTTTGAAAAC TTTCTTTATA TTGCATCTTC ATTGTTGATT TTATACTAAA TGAATTTAGT 43140 .......... .......... .......... .......... .......... .......... 558 TTAGGTGAGT TTGGTTTCCT TTTTATCAGT TCAAGCTTGC AGGTCATGTT TAGTGTTTCC 43080 .......... .......... .......... .......... .......... .......... 558 CTTACTTGCT CGTTTCTTCC GTGTACTGAC ATCATTTTGC CTATATTCTT CGCGATGCAG 43020 .......... .......... .......... .......... .......... .......... 558 ATATGGATAA CCAAGATCAT CAACCAGTGC TTCATTGATC CAGTCGAGTT CCAGATTATG 42960 .......... .......... .......... .......... .......... .......... 558 CTTGGTGAGC CTCCTTGCTT CCAAAGGATT TTCATTTACT TTTCAGTTTA GTTAGGATGT 42900 .......... .......... .......... .......... .......... .......... 558 TGTGGGTCTT GTATCAACTT CCATCAGATT TATTAGAGGC TTCATATATA GTTCATGAGT 42840 .......... .......... .......... .......... .......... .......... 558 CTTTTCCATT TCTTTGTCAA ATGCTTAAGA AACTTGAGTT GCCTGTTTCG GGCTAGTTGA 42780 .......... .......... .......... .......... .......... .......... 558 GTACTATATT ATATTCTGAG TTTATTGTTT GAGACATTTG AGTTAAAGTT GTGCTTTTGA 42720 .......... .......... .......... .......... .......... .......... 558 GTTTATATTA TATCGAGTAA GTCTTACGCT AAGACTTGAG CCAGAAAAGG GTTTGCATGG 42660 .......... .......... .......... .......... .......... .......... 558 GGCCAGAAAT GGTTCTCGAG TGTCGGCCAC GTCCAAGATG TAGGCTCGGG GCATGACATA 42600 .......... .......... .......... .......... .......... .......... 558 TTTGACTTCA CTGCATTGTT AGAATGTTGT TAATGACATG AATTACATTG TTTTTCCATT 42540 .......... .......... .......... .......... .......... .......... 558 CACAGTTTTT TAGTAAGGTC TCCGCTCATG CATTGGCATA GTTACCGTTC TTAATGAGAT 42480 .......... .......... .......... .......... .......... .......... 558 CTTATTTCAT CAACTTTTAT TCTAAATTGG TTTTCACTAG AGTGAGTTAT ACTACGTGGA 42420 .......... .......... .......... .......... .......... .......... 558 TCACTTGATT TACTAGTTTT TGAGATTATG AAGTGTCAGG GACATACTCC TTTCCTACTT 42360 .......... .......... .......... .......... .......... .......... 558 TAAATATCAA AGGAATCTAG AATGTGCTTA GTTTCACTTT ACTACCCTGC ATGTCGATGC 42300 .......... .......... .......... .......... .......... .......... 558 CCTTTCTTGC ATGATTTGTT ATACTTATGC CCCTAGGTTT AATCTTTCTA GTTGGGCGCC 42240 .......... .......... .......... .......... .......... .......... 558 CTAGAAGTTT ACTGTCTGAC TGGAAACCTT GATTTGTTAT ACTTATGCCC CCGATTTACT 42180 .......... .......... .......... .......... .......... .......... 558 CTTGTTAGTT GGACTACTTA CACCCTTGAA ATTTATTGTA CGGTTGGGTG GCCTTGATTT 42120 .......... .......... .......... .......... .......... .......... 558 GTTATATTTA TGCCCCTGAG TTTACTCTTG CTATCTGGGT GGCTTACACC CCTAGTGTTC 42060 .......... .......... .......... .......... .......... .......... 558 CCCGTCTTCT GGAAAGCCCA TTTATGGGAT TTTTTTTAGT TAAAGGTTAA GGATGGTCCT 42000 .......... .......... .......... .......... .......... .......... 558 ACTACTCACC CTGCATTCAT ATGAATCACC TATCACTAAT ATAGTTGTTT GTTGATTGTA 41940 .......... .......... .......... .......... .......... .......... 558 CCCTTCGGTT TATGGGCGTG GGTTGGGATA TGGTTATTGT TGTACCTTAC GGGATTATGG 41880 .......... .......... .......... .......... .......... .......... 558 GGTCTGGTTA GGTTATTGTT TGACTTTATA ATGTTCTCGC TTATTGTTTT CTTGTTAGCT 41820 .......... .......... .......... .......... .......... .......... 558 GATAGGTTTT GACTTCAGAA TTATGGGTGG GGGTCCTCTT ACCCCTGGAT AGTTGTCTTG 41760 .......... .......... .......... .......... .......... .......... 558 GTATCTTAGT TACTTGCAAA TATGTTGTCT TGCGTTTCTA TTACGTTGTT GACTTGACAT 41700 .......... .......... .......... .......... .......... .......... 558 CATAGTTGCT TGTGAATATA AAGTGTATGA GAATATTCTA AAGTGGTTTA TACATGTTAA 41640 .......... .......... .......... .......... .......... .......... 558 ATTGTGTTAG AATTTGAATT TATATTATGA TAATATTTAA TTTATCATAA ATTATAAGTA 41580 .......... .......... .......... .......... .......... .......... 558 TATTTTACGA GTTTGCAAAT GTTCTAGAAG ATATTAAATA CCTTAATAAA TTGAAGTTGT 41520 .......... .......... .......... .......... .......... .......... 558 TAAACTTTTC TTGTACATTA ATATGAGTTA GAAATTAAAT ATTTTCATAC TAATAAATCT 41460 .......... .......... .......... .......... .......... .......... 558 AATAGTGAAA GGTATTTTAT AAAGCATTTC CAAATTAGGA AAAATACATA ATTGAACAAG 41400 .......... .......... .......... .......... .......... .......... 558 AACAAATTTA GATAATATAC AAATAAAATT AAAAACAATT ACATCAGAAA CTATTATCAA 41340 .......... .......... .......... .......... .......... .......... 558 TTTACATATT AACTTACTAA ACCATATATC ACAAAAGAAT GACACGATAA AAACTTTTTC 41280 .......... .......... .......... .......... .......... .......... 558 AATAATTTAG TAAAATGAAT TTAACAAAAA TAATATGTCA ATGAAACAAA AAAGGAATTA 41220 .......... .......... .......... .......... .......... .......... 558 CTAAAAAAAT ATGTCAACGA AAGAAAACAG GAATTACTAA AAAATATATC AATGAAACAA 41160 .......... .......... .......... .......... .......... .......... 558 AGAAGGAATT TAATTAATAT TATGGTTTGG GTCAAATCCT ACCAAATAAG GAATCATCAT 41100 .......... .......... .......... .......... .......... .......... 558 AAATATTTTT ATATTTTTGG TAGTTGAATT AATTTTCATC AAATAATATG ATGATTCTAT 41040 .......... .......... .......... .......... .......... .......... 558 CTCTATAAAT ACATCTTTAA AACAAAGGCT CAACATCACA TTTTCTTACA TTCTCAAATC 40980 .......... .......... .......... .......... .......... .......... 558 AAAAGTTTAG CCATGAGAAG ACCTAATCAC CGTAAAAGAA TTCAAATTGC GAGGATGCAA 40920 .......... .......... .......... .......... .......... .......... 558 AATCAAATTA GCAGGCAAGA TACGTTCTCA AAACGATGTT CTGACCTATT TAAGAAGGCA 40860 .......... .......... .......... .......... .......... .......... 558 AGTGAGCTCT CTACTTTGTG TGGTGATGAT ATTGCTATTA TAGTATATTG TCCCAGCAAC 40800 .......... .......... .......... .......... .......... .......... 558 AAAGTATATT CATTTGGGCA TCCTTCCGTC GAGTCAATTG TGGAGAGATT TTTCAATGAT 40740 .......... .......... .......... .......... .......... .......... 558 GATCTTACAC CCAACACTAA TGATCCTAAC CCCATCATTA TAGCTCAGCA AAATGCTAAT 40680 .......... .......... .......... .......... .......... .......... 558 GTGGATGAGA TTAATAGAAA GATAAACACG TTGGAGAAAG AATTTGCAAA AGAAAAAAGA 40620 .......... .......... .......... .......... .......... .......... 558 CGTGGACAAA CACTTCAAGC ATTGAGGACA GAACCTTCAC ATGAAAAACT TAGCTTTTCT 40560 .......... .......... .......... .......... .......... .......... 558 GGCCTTAAAA GCTTGTGTGA GGCCTTGGAA GCTGCGAACG AAGAAGTTTA CAGAGTAGTG 40500 .......... .......... .......... .......... .......... .......... 558 AGCAAACTTT TGGAGGCTGA TGAGGTGTTA CTATATCAAA CTATTGGAAG TGTGTTCGCT 40440 .......... .......... .......... .......... .......... .......... 558 CCTTTAATAG TTAGAGAAAG CACTTTGTTC GACTCTGATG AAGGGTCATC TCAATCAAGT 40380 .......... .......... .......... .......... .......... .......... 558 GAATATATTT TGCTTGCTTT ATTTAAAGTT CATTGACTTA ATTTGGTATT TATAGAGTTA 40320 .......... .......... .......... .......... .......... .......... 558 AGTATGTCAT TTCGATGATT AAGTTTTTTT TATATATGAT TTTAATTTAT CTTTTGGTAT 40260 .......... .......... .......... .......... .......... .......... 558 ATTTATGATC ATGGAATGGA ATAAGATTTT ATTTTGGTAC TTTATTTATT TGAATTTCTT 40200 .......... .......... .......... .......... .......... .......... 558 TGTCTTACTT TTTTATCGTC TTAAAAAAGA ATGTCTTTTT ACAACACTTA GTTTATAATC 40140 .......... .......... .......... .......... .......... .......... 558 TTCACATGTC ATGTTTAAAA TCGCAAGAAT AAAGATGATT TTGTTATATT TCACATATCT 40080 .......... .......... .......... .......... .......... .......... 558 TTAATTTAAG ATCATAAGAT TCAAAAGTTT TCTTTATTCT TTTATATTTT ATATCAAGTA 40020 .......... .......... .......... .......... .......... .......... 558 ACAATTAGAT AAATAAATTA AAACAAAGGA AGGATGTGAT AATTTGTTGG TTGTTAACAG 39960 .......... .......... .......... .......... .......... .......... 558 TGATATTGAT GTACAAGTGT TGAAAGCACA AGTAGGAAAT GATTATTTAA CACGACATTG 39900 .......... .......... .......... .......... .......... .......... 558 TTAGTAGTTT GAAGTGCTAC GACTAATTTA AAAGAAATGA GGTTCTTATT ATCTGTACTA 39840 .......... .......... .......... .......... .......... .......... 558 TATTCACATA TAACAAACAA TGTCACTTTA CTATGTTTTG GTAAAGTAAG GATGACCTCC 39780 .......... .......... .......... .......... .......... .......... 558 TTACTTGTAT TTTTTTTCGT GGTTTTCCAT TCGGTGTTCA GAGCTCACAT TAGAAGTCCT 39720 .......... .......... .......... .......... .......... .......... 558 AATTAAATTT GGATTGCGCT TTGCAGGGCC CTTTCGGAGC TGGTGCTTCC AATAGGATTT 39660 .......... .......... .......... .......... .......... .......... 558 TCTCCATATC GAGGGCTTTA ACCCGAGACC TCTGATTAAT GGTGAAACAC TTGCATCAGT 39600 .......... .......... .......... .......... .......... .......... 558 TCGCGAAAAC CCATACTGGT CTCCTTACTT ATATTTATCC ATATTGATAA ATTATTATTT 39540 .......... .......... .......... .......... .......... .......... 558 TTATCGTTAA TAAAATGTCA CTAAACATAT TGTCTAGTGG TATATATTGA TAGAAAATTA 39480 .......... .......... .......... .......... .......... .......... 558 AATTAAATAA ATATCATAAA CAATTAACTC AAACAAAGAA TTAAAAGCTC ATCAAATCTT 39420 .......... .......... .......... .......... .......... .......... 558 TAAATGCAAG CATCACTAAT GTATGTGATT AAGAGTTCTC AAATGAAATA GCTTTAATGC 39360 .......... .......... .......... .......... .......... .......... 558 AATAATCCTT TTTGTTTTAT TAGATTTCTC GTTGCTCTTT CTTCGTATTT GGAAAATAAA 39300 .......... .......... .......... .......... .......... .......... 558 GGGAATATGT CAGTATTAAC TTTCTATTTA TGTGTTTTAA AATATTTTCT TACATTATAT 39240 .......... .......... .......... .......... .......... .......... 558 TTCGTCACTA ATCATTTATT GAGATGGATA TCTTTCTGAC TTGTAAAAAA TATATTATTG 39180 .......... .......... .......... .......... .......... .......... 558 TTTTTGTCAC ATAGTCATAC AAACTAATTT CAACCTGCTG ATTTTATGAG ATTTAGTGTC 39120 .......... .......... .......... .......... .......... .......... 558 TAAAATAATG TAAAATGTAG TCAATATTAT ACTTGAATTA TGAACATCAA ACTTCGAATA 39060 .......... .......... .......... .......... .......... .......... 558 TTTATATTTT TATTTAGTAT AGTGAATAAC AATATTTAAT AAGTACATAT TTTTGTGATA 39000 .......... .......... .......... .......... .......... .......... 558 TATTATTTCA TGTGTAGAAG TCATCCATGA TAGAAATTTT TAGTGAAAGT AATATAAATT 38940 .......... .......... .......... .......... .......... .......... 558 ATTAACCATG CAAATAGTTA AGGACTAAAA AACATCAAAT TAATCCTATG ATAAGTTTCA 38880 .......... .......... .......... .......... .......... .......... 558 AGTTAAAATG ACCTGAAATA TGAAATAGAG TGGGAATAAT GTCTACTTCT TTTGGTTAAT 38820 .......... .......... .......... .......... .......... .......... 558 TTTCTGCTAT ATTACATACT CGTACATTCA ATATACTGAG GTCACTCGAC GTGCATCGTT 38760 .......... .......... .......... .......... .......... .......... 558 TATGATGTAG ATATAAGTTT TAAGGATTAT CTGCAGCAAT TTCGTTGAGA TCACTTTGTG 38700 .......... .......... .......... .......... .......... .......... 558 CTTCAAACAA CTTTGGTGAG CCTCCTTGCT TTTCAGAGGA TTTCACAATT TACTTTCATG 38640 .......... .......... .......... .......... .......... .......... 558 TTATTGTTGA GTTGTCGTGG ATCTTGTCCC GACTTCTATC CAAATATTAG AGGCTTCATA 38580 .......... .......... .......... .......... .......... .......... 558 GAGAGTTAGT GTTGATGAGT CTCTTAGTAT TTCCCTTTTG TTTGAGACAT TTTGAGATTG 38520 .......... .......... .......... .......... .......... .......... 558 TTTTGCAAAG TATTATTATT AATGTACTTA AGTATTTTCG GACAATATAG TGAAGTATTT 38460 .......... .......... .......... .......... .......... .......... 558 ACTTAGTTTG AATGTTATAA ATTATACTTT AAAAGCTTCT TAATTTATTC TTGAGTAAGT 38400 .......... .......... .......... .......... .......... .......... 558 CTTTCGCAAA TAGTCAGTTA GGTCAATGGT TCATTTGGGG ACCGTAAATG GTTTTTGGGT 38340 .......... .......... .......... .......... .......... .......... 558 GTCGACCACA AACCAAGACG TAGGCTCGGA CCATGACACG AAGTTCTTAT CCTTTCCACA 38280 .......... .......... .......... .......... .......... .......... 558 GCCTGTAAAC TGTTACATGG ACCCTGAAGT CTCTTATCCT ATTGAAGCCA AAATATCCCA 38220 .......... .......... .......... .......... .......... .......... 558 TTTTCAGATC CTTCATTCCA CGACAAGGTC TATGGTTTGT GGATCCTCAC ACGGTCTGTA 38160 .......... .......... .......... .......... .......... .......... 558 CAAACCTCCT TTAAAACCAT CCTTAAAATT CATCTTCCCT TAGGTCCACT GGTATGGTCT 38100 .......... .......... .......... .......... .......... .......... 558 ATGGACCCAT CCACAGTATG TAGAACCATT CACAAGTTGC GAATCTCAAT TTTCATGTCA 38040 .......... .......... .......... .......... .......... .......... 558 TTCCAAACAT ATCGCTTTAT GAAGGTGTCT GGGTCTATGA CTCGTGAATG CATATACTGG 37980 .......... .......... .......... .......... .......... .......... 558 AAATCAAGAT CACGGTGTTA GACAAATTAT CAATGTCCTT AATTAATGTT TCTCTCAAGA 37920 .......... .......... .......... .......... .......... .......... 558 ACCTATGCCA CTGAACAATT TTTGGGGTGT TGAGGTTCTG TCATATCAAG GTGAACTACT 37860 .......... .......... .......... .......... .......... .......... 558 ATTGTCAATT GAATTATATA GAAGACTTTA ACATGGAGGC CAATATGCAA GACAACAAAA 37800 | |||| | | | || |||| ||||| |||||||||| .......... .......... .TTCA-TTTA A-A--AAAGC CAATTTGCAA GACAACAAAA 593 GAGTTCTTAC TCCTATGTCC GTCTCTAATG TTCTGAGTGT AGACCAAGTT GATCTTATTG 37740 ||||||| || |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GAGTTCTCAC TCCTATGTCC GTCTCTAATG TTCTGAGTGT ACACCAAGTT GATCTTATTG 653 CTCATAGATC TTTCTTATGG ACAATT-GTG ACAAGCTACA ATATTTGTCC TTCACCATAC 37681 | ||| |||| |||||||||| |||||| | | ||||| |||| |||||||||| || ||||||| CCCATGGATC TTTCTTATGG ACAATTCGCG ACAAGTTACA ATATTTGTCC TTTACCATAC 713 CTTACATTGC GTTTGCGAAG AGTGAAGTGA CGTGGACAGA ATTCCTTTCC AAAAGTTAAG 37621 ||||| ||| |||| || |||||||||| ||||| |||| |||||||||| ||||| | CTTACCTTGT CTTTG-TAAA AGTGAAGTGA CGTGGCCAGA ATTCCTTTCC -AAAGTATAT 771 TTTGTCCCCA TTTCACTATT TTGAACCTTG AGAGCTCGGT AGAGGCGATT TTAAAGAGGT 37561 |||| ||||| |||| ||| | |||||||||| | || || | ||||| | | |||||||||| TTTG-CCCCA TTTC-CTA-T TTGAACCTTG A-AGGTCTCT -GAGGC-A-T TTAAAGAGGT 824 TCTTTGAGAT 37551 | ||||| || T-TTTGATAT 833 hqPGS_C01HBa0216G16.1-_SGN-U342371+ (37838 37551) ******************************************************************************** EST sequence 22 +strand 844 n (File: SGN-U322730+) 1 AAGTTGCAGA TCCAAGACCT GGGCCCGCTA AGTGCATTCA GGATGTACCG TCTAGTTCAA 61 ATTCTTTTCA ACATTTGCAT GTTCCAGTGA GACTGATGGA AGATTTCTTG AGGTTAGCTC 121 GAGAAAATAC AAAAAAGAAT TTAGAAACTT GTGGAGTTCT TGCTGGTTCA CTGAAAAACC 181 GTGTTTTTCA CATCACTACT CTTATAGTTC CAAAGCAGGA GTCAACTTCA GATTCATGCC 241 AGACATTAAA TGAAGAGGAG ATTTTTGATG TTCAAGACAA GCGCTCTCTC TTTCCTCTTG 301 GTTGGATCCA TACACATCCA TCACAAACAT GTTTTATGTC ATCAGTTGAT CTGCATACTC 361 ATTATTCTTA TCAGATTATG TTGCCGGAAG CAATTGCAAT TGTGATGGCT CCTACAGACA 421 CAGCCAGCCC TCATGGCATA TTCCACTTGT CTGATCCTGC TGGTGTATCT GTTATTCGGA 481 AATGTCAACA ACGTGGTTTT CATCCTCACG AGGAGCCCGA GGATGGAAGT CCAATATATG 541 AACACTGTTC TCATGTCTAC ATGAATGCAA ACATGAAGTT TGATATTGTT GACCTTCGGT 601 AAGCTCACAG TTTATAAAAA CCTTGGAAAG TGCGCATTTA GGAGTTTCAA TGATGGTTGT 661 ATAGTATTAT ATCTTGGACG TTAAGGTATA CTGCACTTTT ATGTACATTC TCAGGGATCT 721 GAGAATACAG TTTATTTGAA ATGAGCGATT GTGTATTTCC CTTGTTTTCT TTTCTAGTCC 781 AATAATATTT ATGTTGTACA TCAAATGAAA ACTTTTGGTT GTCAAACAAA AAAAAAAAAA 841 AAAA Predicted gene structure (within gDNA segment 54181 to 49824): Exon 1 53581 53499 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 53498 53341 ( 158 n); Pd: 0.674 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 53340 53251 ( 90 n); cDNA 84 173 ( 90 n); score: 1.000 Intron 2 53250 53151 ( 100 n); Pd: 0.888 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 53150 53088 ( 63 n); cDNA 174 236 ( 63 n); score: 1.000 Intron 3 53087 52595 ( 493 n); Pd: 0.911 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 4 52594 52520 ( 75 n); cDNA 237 311 ( 75 n); score: 1.000 Intron 4 52519 51782 ( 738 n); Pd: 0.977 (s: 1.00), Pa: 0.964 (s: 1.00) Exon 5 51781 51719 ( 63 n); cDNA 312 374 ( 63 n); score: 1.000 Intron 5 51718 51505 ( 214 n); Pd: 0.582 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 6 51504 51452 ( 53 n); cDNA 375 427 ( 53 n); score: 1.000 Intron 6 51451 51031 ( 421 n); Pd: 0.917 (s: 1.00), Pa: 0.876 (s: 1.00) Exon 7 51030 50635 ( 396 n); cDNA 428 823 ( 396 n); score: 1.000 PPA cDNA 824 844 MATCH C01HBa0216G16.1- SGN-U322730+ 1.000 823 0.975 C PGS_C01HBa0216G16.1-_SGN-U322730+ (53581 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50635) Alignment (genomic DNA sequence = upper lines): AAGTTGCAGA TCCAAGACCT GGGCCCGCTA AGTGCATTCA GGATGTACCG TCTAGTTCAA 53522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGCAGA TCCAAGACCT GGGCCCGCTA AGTGCATTCA GGATGTACCG TCTAGTTCAA 60 ATTCTTTTCA ACATTTGCAT GTTGTGAGTT CTTATTTTAT TTTACATTAT TTTGGCTTCT 53462 |||||||||| |||||||||| ||| ATTCTTTTCA ACATTTGCAT GTT....... .......... .......... .......... 83 GTATCTCCTT GATCAATTGT AGGAAATTTT GTGTTATAGC CTTTGCAGTT GTAGTTTTAA 53402 .......... .......... .......... .......... .......... .......... 83 ATCAGCTTTA CCTGATAAAT TTTGCTAGTA TGACCTTTTC TTCTTTTTTC TTATTCTGTA 53342 .......... .......... .......... .......... .......... .......... 83 GCCAGTGAGA CTGATGGAAG ATTTCTTGAG GTTAGCTCGA GAAAATACAA AAAAGAATTT 53282 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .CCAGTGAGA CTGATGGAAG ATTTCTTGAG GTTAGCTCGA GAAAATACAA AAAAGAATTT 142 AGAAACTTGT GGAGTTCTTG CTGGTTCACT GGTATGAATT AAACACAGTA AATCTAAAGG 53222 |||||||||| |||||||||| |||||||||| | AGAAACTTGT GGAGTTCTTG CTGGTTCACT G......... .......... .......... 173 CTAATTACTA AATATGAAAT TTATGAACTC TACTTATGTG ATAATTATGT GTTGTATTCC 53162 .......... .......... .......... .......... .......... .......... 173 TCAACTTGCA GAAAAACCGT GTTTTTCACA TCACTACTCT TATAGTTCCA AAGCAGGAGT 53102 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .AAAAACCGT GTTTTTCACA TCACTACTCT TATAGTTCCA AAGCAGGAGT 222 CAACTTCAGA TTCAGTAAGA AGATTTTTTG TTTCATCTGT ATGCTACATT AGATTTATGC 53042 |||||||||| |||| CAACTTCAGA TTCA...... .......... .......... .......... .......... 236 TTCAGCTTGA CCTCTAGTTT TCAGGAAGCA AATTAGATGA ATTAGGATAG AGAAAGTCCA 52982 .......... .......... .......... .......... .......... .......... 236 AACCCTGCAT TTAATCATCT CTAGATTTTG AAGTGGAAAA CTGCTGAACC TTGTTCGTAA 52922 .......... .......... .......... .......... .......... .......... 236 ATTGCTTTTT AGGAGGATCT TTGAAGTTTT CCATTGTTGA ATTTTAATAA CCTGAAGTGG 52862 .......... .......... .......... .......... .......... .......... 236 GATGTAATTG CTGGAAATAG TGCTCATTAT GTTTTCAATT CCCTATTTTC AGAATCAAAG 52802 .......... .......... .......... .......... .......... .......... 236 TTAGAGAGGA ACATAAGAAA CAATGAGTTA GTTGGTTGTT TTTAAATTTC AGATACGGTT 52742 .......... .......... .......... .......... .......... .......... 236 TCCTAATACT CTATATACTG TCCCGATTTT AAAATGAGAG TGCGAGCATG ATATATGTCA 52682 .......... .......... .......... .......... .......... .......... 236 TACTTGTTCA AGAATAAAAT ATTTAGAGAT GGTTCAATGA TAAAAATTGG CTTTTACATG 52622 .......... .......... .......... .......... .......... .......... 236 TTTCTAAACA CAACTTTTGA TTCTTAGTGC CAGACATTAA ATGAAGAGGA GATTTTTGAT 52562 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TGC CAGACATTAA ATGAAGAGGA GATTTTTGAT 269 GTTCAAGACA AGCGCTCTCT CTTTCCTCTT GGTTGGATCC ATGTAAGTAA TGCAAGCAGA 52502 |||||||||| |||||||||| |||||||||| |||||||||| || GTTCAAGACA AGCGCTCTCT CTTTCCTCTT GGTTGGATCC AT........ .......... 311 TATGTTGAGT TATGATTCTA TACTTGGTCA AACATAAGTG TCTTCTACCC TGGAATATGA 52442 .......... .......... .......... .......... .......... .......... 311 AGATTTGAAT AATGAATTGA CTATGTTGTC TCTGTGGAAA AAGATAAGTA GATAAGAAAA 52382 .......... .......... .......... .......... .......... .......... 311 TTCAGCTGAT ATAGATATGT TCTTCTTCCA TGAAATTGTT TGGATTGTCT AGCTTACACC 52322 .......... .......... .......... .......... .......... .......... 311 TTTATAAGTT TTATGTAGAG TATTTACTCT CTTGAATCTT GTAAAAGTTC CTGCAGTACT 52262 .......... .......... .......... .......... .......... .......... 311 GCTCGACAGC TATCTGTTAA TATCATTATT TTTCTTTCAA TATCGGTTGG AGTCATGGGA 52202 .......... .......... .......... .......... .......... .......... 311 GCTAATTAAA CACTTGGGTA CCTTGATTAC GTTTTCTATC TCGAGTTACT TCATTTGTAT 52142 .......... .......... .......... .......... .......... .......... 311 TCATGGTAGG GGACTCTGTT ATGGTTTATG CTGACGTAGT TGATGATTCT GTTTCTCTCA 52082 .......... .......... .......... .......... .......... .......... 311 TTAAGGTCAC AATATGCTTT GATAATGCTA GTGGCTTTGT TTATTTTTAA AGATTGTAGG 52022 .......... .......... .......... .......... .......... .......... 311 GTATGAATTA AATATTGTAG GGTATGACTT ACGTTGAATC TTTGATTGTT CTGACGGCCA 51962 .......... .......... .......... .......... .......... .......... 311 TGAGATTCTT TGTTGTCATA ACTGGCCTAA AATCTACTTG TTTGGAAACA AAGATGAAAC 51902 .......... .......... .......... .......... .......... .......... 311 ATTTGCAGGA GAAGTCTCTT CCATGGTGTA AATGAAGTAG ATTTAGTTTC TCTCACATCT 51842 .......... .......... .......... .......... .......... .......... 311 TGACAGGTTT TATCACCCAT GAGTATGACT TCTTGGCTTC TTGTTTGTGG TAAATTGCAG 51782 .......... .......... .......... .......... .......... .......... 311 ACACATCCAT CACAAACATG TTTTATGTCA TCAGTTGATC TGCATACTCA TTATTCTTAT 51722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATCCAT CACAAACATG TTTTATGTCA TCAGTTGATC TGCATACTCA TTATTCTTAT 371 CAGGTAAAAA GCAATGCTTT GTGTTACTTT ATCTTGATAG GATGGGAAAA CTTCAAATAT 51662 ||| CAG....... .......... .......... .......... .......... .......... 374 CCATTTCTTT AGAATATTAA GTGTATATAT TTCTCAGAAG TTGAAACCTC TCCATTTTAA 51602 .......... .......... .......... .......... .......... .......... 374 GTATAAATGT GGAATGGCAG AATGTAACTG TTCATATTTT TATCAGAGGG TGCATTTTTT 51542 .......... .......... .......... .......... .......... .......... 374 GTTTTTCTTG ACACACTTTC TTTTGGCTCA TTTGTAGATT ATGTTGCCGG AAGCAATTGC 51482 ||| |||||||||| |||||||||| .......... .......... .......... .......ATT ATGTTGCCGG AAGCAATTGC 397 AATTGTGATG GCTCCTACAG ACACAGCCAG GTATATCAAT TATCTGGTAT TGCTCGATTA 51422 |||||||||| |||||||||| |||||||||| AATTGTGATG GCTCCTACAG ACACAGCCAG .......... .......... .......... 427 GCTTGTTCAT GAATTAGGAT TTTAAGTCCA GCTCTTGCTA AGTAACATTG TTCTGATCCC 51362 .......... .......... .......... .......... .......... .......... 427 CAGCTCCATA GTTAACACTC TTGTGAATTG TAATTTAAGT ATGCAAGTCT TGGGTGGAGT 51302 .......... .......... .......... .......... .......... .......... 427 AAGCTCTCTT TAAAGAAGTA AATTATTGAA TGATTTTAAT TGAGTCAAAA TTTTGGTCTT 51242 .......... .......... .......... .......... .......... .......... 427 TCTGCGGCAG TGCTTGGACT TCCCCATGCC TTTGGACTGT TCAGTCTCAT GTGATGCCAC 51182 .......... .......... .......... .......... .......... .......... 427 TGAGAAAAGC ACTTATTAAA GTTGTTTTTA AAACTATCGA GTCCTAAAAC CTATATAGTA 51122 .......... .......... .......... .......... .......... .......... 427 CAGAGATCCA GTACATCATC ATCTGAGATC TGAAAAAAGT CAAATAATGG AAGCGACTCT 51062 .......... .......... .......... .......... .......... .......... 427 AAAATACTGA TGTAGTTTCT TTATGTGACA GCCCTCATGG CATATTCCAC TTGTCTGATC 51002 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CCCTCATGG CATATTCCAC TTGTCTGATC 456 CTGCTGGTGT ATCTGTTATT CGGAAATGTC AACAACGTGG TTTTCATCCT CACGAGGAGC 50942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGGTGT ATCTGTTATT CGGAAATGTC AACAACGTGG TTTTCATCCT CACGAGGAGC 516 CCGAGGATGG AAGTCCAATA TATGAACACT GTTCTCATGT CTACATGAAT GCAAACATGA 50882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGGATGG AAGTCCAATA TATGAACACT GTTCTCATGT CTACATGAAT GCAAACATGA 576 AGTTTGATAT TGTTGACCTT CGGTAAGCTC ACAGTTTATA AAAACCTTGG AAAGTGCGCA 50822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGATAT TGTTGACCTT CGGTAAGCTC ACAGTTTATA AAAACCTTGG AAAGTGCGCA 636 TTTAGGAGTT TCAATGATGG TTGTATAGTA TTATATCTTG GACGTTAAGG TATACTGCAC 50762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGGAGTT TCAATGATGG TTGTATAGTA TTATATCTTG GACGTTAAGG TATACTGCAC 696 TTTTATGTAC ATTCTCAGGG ATCTGAGAAT ACAGTTTATT TGAAATGAGC GATTGTGTAT 50702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATGTAC ATTCTCAGGG ATCTGAGAAT ACAGTTTATT TGAAATGAGC GATTGTGTAT 756 TTCCCTTGTT TTCTTTTCTA GTCCAATAAT ATTTATGTTG TACATCAAAT GAAAACTTTT 50642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCTTGTT TTCTTTTCTA GTCCAATAAT ATTTATGTTG TACATCAAAT GAAAACTTTT 816 GGTTGTC 50635 ||||||| GGTTGTC 823 hqPGS_C01HBa0216G16.1-_SGN-U322730+ (53581 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50635) ******************************************************************************** EST sequence 37 +strand 856 n (File: SGN-U337675+) 1 TAGAACTCTG GGAGCCTCCG GGCTGCAGGA ATTCGGCACT AGGAAGTTGC AGATCCAAGA 61 CCTGGGCCCG CTGAGTGCAT TCAGGGTGTA CCGTCTAGTT CATAAGCTTT TAACACCCAG 121 TTGCTCTACT GAGACTGTTC GTACACGTGT TGAGGTTAGC TCGAGAAAAT ACAAAAAAGA 181 ATTTAGAAAC TTGTGGAGTT CTTGCTGGTT CACTGAAAAA CCGTGTTTTT CACATCACTA 241 CTCTTATAGT TCCAAAGCAG GAGTCAACTT CAGATTCATG CCAGACATTA AATGAAGAGG 301 AGATTTTTGA TGTTCAAGAC AAGCGCTCTC TCTTTCCTCT TGGTTGGATC CATACACATC 361 CATCACAAAC ATGTTTTATG TCATCAGTTG ATCTGCATAC TCATTATTCA CAGTTAAGGA 421 TGTTGCCGGA AGCAATTGCA ATTGTTATGG CTCCTACAGA CACAGCCAGC CCTCATGGCA 481 TATTCCACTT GTCTGATCCT GCTGGGGTAT CTGTTATTCG GAAATGTCAA CAACGTGGTT 541 TTCATCCTCA CGAGGAGCCC GAAGGGGGAA GATACATGGT CGAACACTGT TCTCATGTCT 601 ACATGAATGC AAACATGAAG TTTGATATTG TTGACCTTCG GTAAGCTCAC AGTTTATAAA 661 AACCTTGGAA AGTGCGCATT TAGGGAGTTT CAATGATGGG TTGGATAAGA TTATATCTTT 721 GGACGTTAAA GTATACTGCA CCTTTTATGT ACAATTCTCA GGGGATCTTG GAGAATCCAG 781 TGTTATTTTG AAATGAGCCG AAGGGGGGTT TTCCCCTTGG TTTTCTTTTT TTAGGCCCAA 841 AAAGATTGTG GGTGGG Predicted gene structure (within gDNA segment 54611 to 48622): Exon 1 53578 53499 ( 80 n); cDNA 47 125 ( 79 n); score: 0.837 Intron 1 53498 53341 ( 158 n); Pd: 0.674 (s: 0.76), Pa: 0.998 (s: 0.82) Exon 2 53340 53251 ( 90 n); cDNA 126 215 ( 90 n); score: 0.900 Intron 2 53250 53151 ( 100 n); Pd: 0.888 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 3 53150 53088 ( 63 n); cDNA 216 278 ( 63 n); score: 1.000 Intron 3 53087 52595 ( 493 n); Pd: 0.911 (s: 1.00), Pa: 0.956 (s: 1.00) Exon 4 52594 52520 ( 75 n); cDNA 279 353 ( 75 n); score: 1.000 Intron 4 52519 51782 ( 738 n); Pd: 0.977 (s: 1.00), Pa: 0.964 (s: 1.00) Exon 5 51781 51719 ( 63 n); cDNA 354 416 ( 63 n); score: 0.905 Intron 5 51718 51505 ( 214 n); Pd: 0.582 (s: 0.88), Pa: 1.000 (s: 0.94) Exon 6 51504 51452 ( 53 n); cDNA 417 469 ( 53 n); score: 0.943 Intron 6 51451 51031 ( 421 n); Pd: 0.917 (s: 0.98), Pa: 0.876 (s: 0.98) Exon 7 51030 50742 ( 289 n); cDNA 470 763 ( 294 n); score: 0.901 MATCH C01HBa0216G16.1- SGN-U337675+ 0.917 713 0.833 C PGS_C01HBa0216G16.1-_SGN-U337675+ (53578 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50742) Alignment (genomic DNA sequence = upper lines): TTGCAGATCC AAGACCTGGG CCCGCTAAGT GCATTCAGGA TGTACCGTCT AGTTCAAATT 53519 |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| |||||| | TTGCAGATCC AAGACCTGGG CCCGCTGAGT GCATTCAGGG TGTACCGTCT AGTTCATAAG 106 CTTTTCAACA TTTGCATGTT GTGAGTTCTT ATTTTATTTT ACATTATTTT GGCTTCTGTA 53459 ||||| |||| || | CTTTT-AACA CCCAGTTGCT .......... .......... .......... .......... 125 TCTCCTTGAT CAATTGTAGG AAATTTTGTG TTATAGCCTT TGCAGTTGTA GTTTTAAATC 53399 .......... .......... .......... .......... .......... .......... 125 AGCTTTACCT GATAAATTTT GCTAGTATGA CCTTTTCTTC TTTTTTCTTA TTCTGTAGCC 53339 | .......... .......... .......... .......... .......... ........CT 127 AGTGAGACTG ATGGAAGATT TCTTGAGGTT AGCTCGAGAA AATACAAAAA AGAATTTAGA 53279 | |||||||| | | | | | |||||||| |||||||||| |||||||||| |||||||||| ACTGAGACTG TTCGTACACG TGTTGAGGTT AGCTCGAGAA AATACAAAAA AGAATTTAGA 187 AACTTGTGGA GTTCTTGCTG GTTCACTGGT ATGAATTAAA CACAGTAAAT CTAAAGGCTA 53219 |||||||||| |||||||||| |||||||| AACTTGTGGA GTTCTTGCTG GTTCACTG.. .......... .......... .......... 215 ATTACTAAAT ATGAAATTTA TGAACTCTAC TTATGTGATA ATTATGTGTT GTATTCCTCA 53159 .......... .......... .......... .......... .......... .......... 215 ACTTGCAGAA AAACCGTGTT TTTCACATCA CTACTCTTAT AGTTCCAAAG CAGGAGTCAA 53099 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA AAACCGTGTT TTTCACATCA CTACTCTTAT AGTTCCAAAG CAGGAGTCAA 267 CTTCAGATTC AGTAAGAAGA TTTTTTGTTT CATCTGTATG CTACATTAGA TTTATGCTTC 53039 |||||||||| | CTTCAGATTC A......... .......... .......... .......... .......... 278 AGCTTGACCT CTAGTTTTCA GGAAGCAAAT TAGATGAATT AGGATAGAGA AAGTCCAAAC 52979 .......... .......... .......... .......... .......... .......... 278 CCTGCATTTA ATCATCTCTA GATTTTGAAG TGGAAAACTG CTGAACCTTG TTCGTAAATT 52919 .......... .......... .......... .......... .......... .......... 278 GCTTTTTAGG AGGATCTTTG AAGTTTTCCA TTGTTGAATT TTAATAACCT GAAGTGGGAT 52859 .......... .......... .......... .......... .......... .......... 278 GTAATTGCTG GAAATAGTGC TCATTATGTT TTCAATTCCC TATTTTCAGA ATCAAAGTTA 52799 .......... .......... .......... .......... .......... .......... 278 GAGAGGAACA TAAGAAACAA TGAGTTAGTT GGTTGTTTTT AAATTTCAGA TACGGTTTCC 52739 .......... .......... .......... .......... .......... .......... 278 TAATACTCTA TATACTGTCC CGATTTTAAA ATGAGAGTGC GAGCATGATA TATGTCATAC 52679 .......... .......... .......... .......... .......... .......... 278 TTGTTCAAGA ATAAAATATT TAGAGATGGT TCAATGATAA AAATTGGCTT TTACATGTTT 52619 .......... .......... .......... .......... .......... .......... 278 CTAAACACAA CTTTTGATTC TTAGTGCCAG ACATTAAATG AAGAGGAGAT TTTTGATGTT 52559 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....TGCCAG ACATTAAATG AAGAGGAGAT TTTTGATGTT 314 CAAGACAAGC GCTCTCTCTT TCCTCTTGGT TGGATCCATG TAAGTAATGC AAGCAGATAT 52499 |||||||||| |||||||||| |||||||||| ||||||||| CAAGACAAGC GCTCTCTCTT TCCTCTTGGT TGGATCCAT. .......... .......... 353 GTTGAGTTAT GATTCTATAC TTGGTCAAAC ATAAGTGTCT TCTACCCTGG AATATGAAGA 52439 .......... .......... .......... .......... .......... .......... 353 TTTGAATAAT GAATTGACTA TGTTGTCTCT GTGGAAAAAG ATAAGTAGAT AAGAAAATTC 52379 .......... .......... .......... .......... .......... .......... 353 AGCTGATATA GATATGTTCT TCTTCCATGA AATTGTTTGG ATTGTCTAGC TTACACCTTT 52319 .......... .......... .......... .......... .......... .......... 353 ATAAGTTTTA TGTAGAGTAT TTACTCTCTT GAATCTTGTA AAAGTTCCTG CAGTACTGCT 52259 .......... .......... .......... .......... .......... .......... 353 CGACAGCTAT CTGTTAATAT CATTATTTTT CTTTCAATAT CGGTTGGAGT CATGGGAGCT 52199 .......... .......... .......... .......... .......... .......... 353 AATTAAACAC TTGGGTACCT TGATTACGTT TTCTATCTCG AGTTACTTCA TTTGTATTCA 52139 .......... .......... .......... .......... .......... .......... 353 TGGTAGGGGA CTCTGTTATG GTTTATGCTG ACGTAGTTGA TGATTCTGTT TCTCTCATTA 52079 .......... .......... .......... .......... .......... .......... 353 AGGTCACAAT ATGCTTTGAT AATGCTAGTG GCTTTGTTTA TTTTTAAAGA TTGTAGGGTA 52019 .......... .......... .......... .......... .......... .......... 353 TGAATTAAAT ATTGTAGGGT ATGACTTACG TTGAATCTTT GATTGTTCTG ACGGCCATGA 51959 .......... .......... .......... .......... .......... .......... 353 GATTCTTTGT TGTCATAACT GGCCTAAAAT CTACTTGTTT GGAAACAAAG ATGAAACATT 51899 .......... .......... .......... .......... .......... .......... 353 TGCAGGAGAA GTCTCTTCCA TGGTGTAAAT GAAGTAGATT TAGTTTCTCT CACATCTTGA 51839 .......... .......... .......... .......... .......... .......... 353 CAGGTTTTAT CACCCATGAG TATGACTTCT TGGCTTCTTG TTTGTGGTAA ATTGCAGACA 51779 ||| .......... .......... .......... .......... .......... .......ACA 356 CATCCATCAC AAACATGTTT TATGTCATCA GTTGATCTGC ATACTCATTA TTCTTATCAG 51719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| | CATCCATCAC AAACATGTTT TATGTCATCA GTTGATCTGC ATACTCATTA TTCACAGTTA 416 GTAAAAAGCA ATGCTTTGTG TTACTTTATC TTGATAGGAT GGGAAAACTT CAAATATCCA 51659 .......... .......... .......... .......... .......... .......... 416 TTTCTTTAGA ATATTAAGTG TATATATTTC TCAGAAGTTG AAACCTCTCC ATTTTAAGTA 51599 .......... .......... .......... .......... .......... .......... 416 TAAATGTGGA ATGGCAGAAT GTAACTGTTC ATATTTTTAT CAGAGGGTGC ATTTTTTGTT 51539 .......... .......... .......... .......... .......... .......... 416 TTTCTTGACA CACTTTCTTT TGGCTCATTT GTAGATTATG TTGCCGGAAG CAATTGCAAT 51479 | ||| |||||||||| |||||||||| .......... .......... .......... ....AGGATG TTGCCGGAAG CAATTGCAAT 442 TGTGATGGCT CCTACAGACA CAGCCAGGTA TATCAATTAT CTGGTATTGC TCGATTAGCT 51419 ||| |||||| |||||||||| ||||||| TGTTATGGCT CCTACAGACA CAGCCAG... .......... .......... .......... 469 TGTTCATGAA TTAGGATTTT AAGTCCAGCT CTTGCTAAGT AACATTGTTC TGATCCCCAG 51359 .......... .......... .......... .......... .......... .......... 469 CTCCATAGTT AACACTCTTG TGAATTGTAA TTTAAGTATG CAAGTCTTGG GTGGAGTAAG 51299 .......... .......... .......... .......... .......... .......... 469 CTCTCTTTAA AGAAGTAAAT TATTGAATGA TTTTAATTGA GTCAAAATTT TGGTCTTTCT 51239 .......... .......... .......... .......... .......... .......... 469 GCGGCAGTGC TTGGACTTCC CCATGCCTTT GGACTGTTCA GTCTCATGTG ATGCCACTGA 51179 .......... .......... .......... .......... .......... .......... 469 GAAAAGCACT TATTAAAGTT GTTTTTAAAA CTATCGAGTC CTAAAACCTA TATAGTACAG 51119 .......... .......... .......... .......... .......... .......... 469 AGATCCAGTA CATCATCATC TGAGATCTGA AAAAAGTCAA ATAATGGAAG CGACTCTAAA 51059 .......... .......... .......... .......... .......... .......... 469 ATACTGATGT AGTTTCTTTA TGTGACAGCC CTCATGGCAT ATTCCACTTG TCTGATCCTG 50999 || |||||||||| |||||||||| |||||||||| .......... .......... ........CC CTCATGGCAT ATTCCACTTG TCTGATCCTG 501 CTGGTGTATC TGTTATTCGG AAATGTCAAC AACGTGGTTT TCATCCTCAC GAGGAGCCCG 50939 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGGTATC TGTTATTCGG AAATGTCAAC AACGTGGTTT TCATCCTCAC GAGGAGCCCG 561 AGGATGGAAG TCCAATATAT GAACACTGTT CTCATGTCTA CATGAATGCA AACATGAAGT 50879 | | ||||| || |||||||||| |||||||||| |||||||||| |||||||||| AAGGGGGAAG ATACATGGTC GAACACTGTT CTCATGTCTA CATGAATGCA AACATGAAGT 621 TTGATATTGT TGACCTTCGG TAAGCTCACA GTTTATAAAA ACCTTGGAAA GTGCGCATTT 50819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATATTGT TGACCTTCGG TAAGCTCACA GTTTATAAAA ACCTTGGAAA GTGCGCATTT 681 A-GGAGTTTC AATGAT-GGT TGTATAGTAT TATATC-TTG GACGTTAAGG TATACTGCA- 50763 | |||||||| |||||| ||| || ||| || |||||| ||| |||||||| | ||||||||| AGGGAGTTTC AATGATGGGT TGGATAAGAT TATATCTTTG GACGTTAAAG TATACTGCAC 741 CTTTTATGTA C-ATTCTCAG GG 50742 |||||||||| | |||||||| || CTTTTATGTA CAATTCTCAG GG 763 hqPGS_C01HBa0216G16.1-_SGN-U337675+ (53578 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50742) ******************************************************************************** EST sequence 26 +strand 991 n (File: SGN-U323817+) 1 TTCTTCCTTA AATCGCCGGA AAATCTCTCC CCGGGGCAAT GAGGCGGCCA GCGACCATGA 61 ATATCGACGC CATGGCGCGG AAAGTCGACG TCGACAATCG AATTCCTCTT CGCAATTACT 121 ACAGGATCGC CAATAATCTC CTCCGACAGG CTAGTATTCA TCGTGGAGAG AAGAATATCA 181 TAGACTTGTA TATAATACTT CTGAGATATT CAAGTTTGGT TACTGAAACA ATACCCTCTC 241 ATCGAGATTA CCAGGCTTTG CATCCTAAAG AAAGAGCATT ATCCAAAAAG ATGCTGTTAA 301 CTGTGCTAGA TGAACTAGAG GGTTTAAAAC CTGAATTCCA GCGCCAGTTT CAAGCAATCG 361 GTGAAGTTCA AGTAACAGCT CAGCCTTACC AAGTCAATAA TTTGGAGAAC CATCGATATA 421 GACCAGTTGG GAATTCTTTT GGACAACCTT CTACCAGCAA TAAAGCATCT TCATATTATG 481 ATAATCAATG GGCCATAACA AATGCACCTT CATCTACATG GAAACAGAAC AATGAATATT 541 CTCATATTTC ATCCCCAAGT TCATTTGACA AGCAATTCCA GAAGCTATCT TTCAATTTTT 601 CTGTTCCAAA GCAAGAAACG TTATCAAGGC ACTCTTTTTT TGGCCCCAAT GGTCTTCGTG 661 GTCAATGGCC AGGACCTAGT TCTGAGATAA AGGTTAATTA CCCAGTACAT GATGATCTAG 721 CTCCAAATGA GATTTGGAGC CTTAATCCAG TTGAAGATAG ACCTTTGGTG TCCAAGGACA 781 CTAGCTTGAT AGTGGATAAG TCTTCTATGG AATCGGTTCT TTCTTTGGAT GATGGGCGAT 841 GGTTACATCC TACTGAGGAT TCCAATTTTC AATTTCTTGA CGATGTGCGG AGTGATAACA 901 TTCCTTTGAG TAACTTAAGG CAACCTTCGC CTTCTCCAGT TTTGGCACAA CTACAACAGG 961 AGTTTCGTCC TATATCTTCG TCCAAAGTTG C Predicted gene structure (within gDNA segment 63751 to 52839): Exon 1 63151 63003 ( 149 n); cDNA 1 149 ( 149 n); score: 1.000 Intron 1 63002 62399 ( 604 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 62398 62334 ( 65 n); cDNA 150 214 ( 65 n); score: 1.000 Intron 2 62333 62241 ( 93 n); Pd: 0.724 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 3 62240 62165 ( 76 n); cDNA 215 290 ( 76 n); score: 1.000 Intron 3 62164 61917 ( 248 n); Pd: 0.989 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 61916 61716 ( 201 n); cDNA 291 491 ( 201 n); score: 1.000 Intron 4 61715 61318 ( 398 n); Pd: 0.959 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 61317 61223 ( 95 n); cDNA 492 586 ( 95 n); score: 1.000 Intron 5 61222 54251 (6972 n); Pd: 0.472 (s: 1.00), Pa: 0.842 (s: 1.00) Exon 6 54250 54145 ( 106 n); cDNA 587 692 ( 106 n); score: 1.000 Intron 6 54144 54061 ( 84 n); Pd: 0.794 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 7 54060 54014 ( 47 n); cDNA 693 739 ( 47 n); score: 1.000 Intron 7 54013 53827 ( 187 n); Pd: 0.934 (s: 1.00), Pa: 0.943 (s: 1.00) Exon 8 53826 53575 ( 252 n); cDNA 740 991 ( 252 n); score: 0.992 MATCH C01HBa0216G16.1- SGN-U323817+ 0.998 991 1.000 C PGS_C01HBa0216G16.1-_SGN-U323817+ (63151 63003,62398 62334,62240 62165,61916 61716,61317 61223,54250 54145,54060 54014,53826 53575) Alignment (genomic DNA sequence = upper lines): TTCTTCCTTA AATCGCCGGA AAATCTCTCC CCGGGGCAAT GAGGCGGCCA GCGACCATGA 63092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCCTTA AATCGCCGGA AAATCTCTCC CCGGGGCAAT GAGGCGGCCA GCGACCATGA 60 ATATCGACGC CATGGCGCGG AAAGTCGACG TCGACAATCG AATTCCTCTT CGCAATTACT 63032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCGACGC CATGGCGCGG AAAGTCGACG TCGACAATCG AATTCCTCTT CGCAATTACT 120 ACAGGATCGC CAATAATCTC CTCCGACAGG TAAAATATTT TCAAATTCTC CTCCCCCTTT 62972 |||||||||| |||||||||| ||||||||| ACAGGATCGC CAATAATCTC CTCCGACAG. .......... .......... .......... 149 ATTTTGTGTT TTACAAATAT CCTGCCCCCA AATTGATTGA ATTGGGTAAG CTCTTTATTT 62912 .......... .......... .......... .......... .......... .......... 149 GATTTTTCAA TTGGGGTTAT GATTGTTGTA TTATTGATAC AACTATTAAA GCTGCAACCT 62852 .......... .......... .......... .......... .......... .......... 149 TTACAACTAT ACATCAATAC CAAAATAGTT GCGATCCGTT AAATTACTCT TCTATATCCC 62792 .......... .......... .......... .......... .......... .......... 149 GAGAATTCAA AACTTTTGTT TTCATAACTC CGGTGCCAAC TTGTTAGAGT TGAACTTATT 62732 .......... .......... .......... .......... .......... .......... 149 TGATTTTTCA GTTGGAGTTC TAACTTTTTA CTGATATAAG CTGTTAAATG TGGACCATAG 62672 .......... .......... .......... .......... .......... .......... 149 CAAATACATC TACAGTTGTG CCTCAATCGT AAACTAGTTT GAGTTCACTA TCTGCATGAT 62612 .......... .......... .......... .......... .......... .......... 149 CTCTATCTAT TTTGCTCTAC TCATGCCTAT TTGATTCGAA TACTGACATT GTTATGATGA 62552 .......... .......... .......... .......... .......... .......... 149 TAAAACTGTA ACTTTTACTG CTGATGCCTC TCTCCAATGT TTGTTGGGTT TGGCTATATG 62492 .......... .......... .......... .......... .......... .......... 149 TATCTTGATA TATGTTGCAT TCAGAAACAT TTATATTAAC AAAATGGTTT TGTTTGGATA 62432 .......... .......... .......... .......... .......... .......... 149 GAGTTTTGTG ATTGTCTTAT GGTTTACTTA CAGGCTAGTA TTCATCGTGG AGAGAAGAAT 62372 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GCTAGTA TTCATCGTGG AGAGAAGAAT 176 ATCATAGACT TGTATATAAT ACTTCTGAGA TATTCAAGGT GAATCAAGAA TAATGCTTTT 62312 |||||||||| |||||||||| |||||||||| |||||||| ATCATAGACT TGTATATAAT ACTTCTGAGA TATTCAAG.. .......... .......... 214 TTTGTAGCCA ATTTATCCTT AGTTGGACCA TTTATGTGTT TGCTGATAAC TAAATGGTGT 62252 .......... .......... .......... .......... .......... .......... 214 TGGTTGTACA GTTTGGTTAC TGAAACAATA CCCTCTCATC GAGATTACCA GGCTTTGCAT 62192 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TTTGGTTAC TGAAACAATA CCCTCTCATC GAGATTACCA GGCTTTGCAT 263 CCTAAAGAAA GAGCATTATC CAAAAAGGTC AGTATTTCAT CAGTTCATCT TCCCAAATGA 62132 |||||||||| |||||||||| ||||||| CCTAAAGAAA GAGCATTATC CAAAAAG... .......... .......... .......... 290 TCCTTTACGA ATGGGGTTAC TTTGAAGACA TTTTCTTATA TTTACTAATT AACATTCTGG 62072 .......... .......... .......... .......... .......... .......... 290 ACTGCAAATT AATTCTTCAT GGGATCTTTA TAGGCTCTGT TATTTTTAAC TAATGTGTCC 62012 .......... .......... .......... .......... .......... .......... 290 AGATACGATT TGTGATGGCG GGCTTTAAGT TGACGTCTCG ACTTGAAGAT GACAATTTTT 61952 .......... .......... .......... .......... .......... .......... 290 CTATTTTTGA TTGTCTGATT GTCTCATTGT CTCAGATGCT GTTAACTGTG CTAGATGAAC 61892 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATGCT GTTAACTGTG CTAGATGAAC 315 TAGAGGGTTT AAAACCTGAA TTCCAGCGCC AGTTTCAAGC AATCGGTGAA GTTCAAGTAA 61832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGGTTT AAAACCTGAA TTCCAGCGCC AGTTTCAAGC AATCGGTGAA GTTCAAGTAA 375 CAGCTCAGCC TTACCAAGTC AATAATTTGG AGAACCATCG ATATAGACCA GTTGGGAATT 61772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTCAGCC TTACCAAGTC AATAATTTGG AGAACCATCG ATATAGACCA GTTGGGAATT 435 CTTTTGGACA ACCTTCTACC AGCAATAAAG CATCTTCATA TTATGATAAT CAATGGGTAA 61712 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTTTTGGACA ACCTTCTACC AGCAATAAAG CATCTTCATA TTATGATAAT CAATGG.... 491 ACACACTGTT TTTTTTCCGT TGAATTGTTT GGGTTTTGGT TTATCTGTTG CATTTTATGA 61652 .......... .......... .......... .......... .......... .......... 491 TATTACTTTG GCTATTTGTT TTTTCTATCA CTTTATGCTG TTTTCATATT TCCTTCTTTA 61592 .......... .......... .......... .......... .......... .......... 491 GAAACTAGAA TGGTAAATAA TTTAAATTAT AACAGTTATC ACGAGAGTAC TTAAATTATA 61532 .......... .......... .......... .......... .......... .......... 491 TTAGTTTAGG GGAAGCTTTC TCTTACTGGA TGTCACAGTT TCGTATTTTT TTCCATCTCA 61472 .......... .......... .......... .......... .......... .......... 491 GTGAAGTAAA GCGCATAATT TCTTTGCCTC CAGTATCATT CCAATTCATA TTTAGTTGCT 61412 .......... .......... .......... .......... .......... .......... 491 GTAACTTTCA AGACCTTCTA CTTAGCCTTT TTTTCTTTCT TACACCTTTT CTCTCTTCTT 61352 .......... .......... .......... .......... .......... .......... 491 ATGGAACACA AATTTGTCTA TGGTAAAATT GCAGGCCATA ACAAATGCAC CTTCATCTAC 61292 |||||| |||||||||| |||||||||| .......... .......... .......... ....GCCATA ACAAATGCAC CTTCATCTAC 517 ATGGAAACAG AACAATGAAT ATTCTCATAT TTCATCCCCA AGTTCATTTG ACAAGCAATT 61232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAAACAG AACAATGAAT ATTCTCATAT TTCATCCCCA AGTTCATTTG ACAAGCAATT 577 CCAGAAGCTG TGAGTATCCA AATTAAGAAA GTTACTAATT TTTCTCAGGG ATGGGGGTTG 61172 ||||||||| CCAGAAGCT. .......... .......... .......... .......... .......... 586 TTGTGTTTCA GAGCATGAAA AAATGTATTT ATATAATTTG TTTGTCTTTG TTGGTTTCGC 61112 .......... .......... .......... .......... .......... .......... 586 GAAGACTCGT TTTGTAGAGT TTTGGAATAT TCTAGATAAA TAATAATTTG ACTTACTACT 61052 .......... .......... .......... .......... .......... .......... 586 TTTGAGACAA ATAAGATTGA TTTTAATTAT ACACCTAAAC AACACATTAA TTTTAACACT 60992 .......... .......... .......... .......... .......... .......... 586 CCCCTTAACG TATCGGTTTT AAACTCCTTA AAGCTCACAA AATTTCTTAA ATTTTCCTTG 60932 .......... .......... .......... .......... .......... .......... 586 GGCAATGCTT TATTGAAAAT ACTATCAACA TAAATTTCTT AATTTAGTAG CTATATTCCC 60872 .......... .......... .......... .......... .......... .......... 586 AGTATTACTA GTAAAAATCA AATCATCAAC CTAAATAGCA ACAATAAGAA TGAAGTTACA 60812 .......... .......... .......... .......... .......... .......... 586 TCGTTTCTTC CAGTTCAAAG AAGTGACCTT GTTTCTTCGT TAAAGAGTTG GCTCGCTCTT 60752 .......... .......... .......... .......... .......... .......... 586 GGAAAATCTA TGAATATGAT GCTCAAAGTA GTTGTCAATT TGATTATACC ACCACATAGT 60692 .......... .......... .......... .......... .......... .......... 586 GCTTGCTTCA ACCCATACAA TGCCGTTTTG AGCTTGTACA CTTTATCCGA TTCTGTCTTT 60632 .......... .......... .......... .......... .......... .......... 586 TACCATCACG TTTGATTTCT TTTTGAAGTT CACCATTCAA AAATGTTTAT TTATATCTAG 60572 .......... .......... .......... .......... .......... .......... 586 TTAGTACAAT AATGGACCTT TTTTTCAATG AATGCAACAA GAGTTCAGAT TGTGTCCTTG 60512 .......... .......... .......... .......... .......... .......... 586 CGAAGAGACG GTGCAAAGGT GTCATGATAA TCAACTCCTT CCTGGCTGTT GTGAATACCC 60452 .......... .......... .......... .......... .......... .......... 586 TTTTTGCAGC CATCCTTGCC TAGTACTTCA ATAGGAAACC ATCCATATAA TACTTGATTT 60392 .......... .......... .......... .......... .......... .......... 586 TGGATATCCA CATTACTCCA ATGGCTTCTC GATTTTCTAG TTTGCTTACC AACCCCCAAT 60332 .......... .......... .......... .......... .......... .......... 586 TCTGATTTTT TCTCACTTGA AATTCTTCCA CCATTTTCTT TTCCGAAGAT TGTTTTTAAT 60272 .......... .......... .......... .......... .......... .......... 586 TGCTTCTTCA AAAAGCTTAC TGGTTCAACC ACTACCCTGT CTTGAGTTGC TAGAACTCGA 60212 .......... .......... .......... .......... .......... .......... 586 ACCATCACAT CTTAGAGCTT CTGCACCATT AGTTTCCTCA AATTCTTCAG ACTCTACAAC 60152 .......... .......... .......... .......... .......... .......... 586 TTATCATTCA ACCTTGCTTC CCAATTTCAA CTTGCTTCTT CGTTGAATAA TACATCTCTA 60092 .......... .......... .......... .......... .......... .......... 586 CTTATAATAG GCTATAAAAA TGTATTTCTC ACTTGTTTTA ACAAGCATAT GCCTGTTCTA 60032 .......... .......... .......... .......... .......... .......... 586 TTTAGATTTT GAGCATCAAA AATGCAACCT AAAATCTTCA AGTGCTTTGC GGAAGAGGGA 59972 .......... .......... .......... .......... .......... .......... 586 GTTCTATTTT GCACCGCAAT TTTGCGGTGG AGTGTACCCA TAGATACCTG CCTTTCTATT 59912 .......... .......... .......... .......... .......... .......... 586 CCTTAATCTT CGCATAACTT ATTAAACTCT CATGAGGCAT ATTCTTCACC TCTATCACTC 59852 .......... .......... .......... .......... .......... .......... 586 CTCAACACCT TTATATAGTG GCCACTTTGT TTTCCAACAA TATTAATATC TCAGATTTTT 59792 .......... .......... .......... .......... .......... .......... 586 GTTTTATGAA TTAAGACCAT CTCATTCTTG TATTATCATT AGTGAACAAA TAAAGTACCT 59732 .......... .......... .......... .......... .......... .......... 586 ACTTCCGCCA AGAGATGTCC TCATTGGTCT ACAAACATCT TTATGAACCA GCTCCAATGT 59672 .......... .......... .......... .......... .......... .......... 586 TCATTTTGCT CTCTATGCAC CACTTCACAT GTTGCTTTTC AATTGCAGAC CCTTCGCTAA 59612 .......... .......... .......... .......... .......... .......... 586 CACCGCCTTC ATTTTCAATT CTTGGCAGCA CATACACCAT ATTCTTTTCT TTTAGAAGCT 59552 .......... .......... .......... .......... .......... .......... 586 TCATCCGTTG AATATACAAA TATCCTGGTG ATCATCCAAG AGTATGGCCT ACTGGTCAAT 59492 .......... .......... .......... .......... .......... .......... 586 GAAATGGGTT GACAACCATG AGATCTGTGG TTCAAATCCC AATAGTAACT AGGTGATTTC 59432 .......... .......... .......... .......... .......... .......... 586 ATTTGTCTTA GCCTTGGTGG GCGGAGTTAC CGGGGTACGT GGTGGTACTA GTTGCTGGTG 59372 .......... .......... .......... .......... .......... .......... 586 AGAGGTGGGA GGTATCCCCT TGAATTAGTC GAGGTGCGCG CAAGCTTGTC CTCGCACCAC 59312 .......... .......... .......... .......... .......... .......... 586 GATTATAACA ATAATTTAAA AAGTACAAGT GTCCTAGCCT CTTGTGTCGT GGCCAAGACT 59252 .......... .......... .......... .......... .......... .......... 586 TGTCATTAAC TTGTGCTTTC AAGGTTACAT CTCCCCCATA GTTGAAGACT GTCAAACACT 59192 .......... .......... .......... .......... .......... .......... 586 TCTTCCTTTT TCAATCCTTA CATTTGTAGT CCTCACCTTT GACTTGAGTT TCTTTTCTTC 59132 .......... .......... .......... .......... .......... .......... 586 TTTTGTATCA TAGATTGTGC AGTAATTATC TTGTAAAGAA ATAGCATACT TATCCTCCAC 59072 .......... .......... .......... .......... .......... .......... 586 AAGTTGCTTG TAACTAAGTA ATTTTATCTA AAATTAGGAG CGAAAAGTAC ATAATGGATA 59012 .......... .......... .......... .......... .......... .......... 586 AGTTTAGTAC CTTTGGTTGA ATGCAAATTG TGCCTCTTCC AATTGCTTGA ACACAAATTT 58952 .......... .......... .......... .......... .......... .......... 586 CATTACCCAT CTTCGTTTCA GCCTTCACTT TGTCATTCAC CCTTGTAAAG ATACTTTTGT 58892 .......... .......... .......... .......... .......... .......... 586 TCCTGGTCAT AGATTGTTGC ACCGGTAAAG ATGCATCCAC CCTTGTAGGC TTATAATGCT 58832 .......... .......... .......... .......... .......... .......... 586 CGTTCACTTG TGTTTTTGTG GACTAGTTAA GCTTGGATTG TTAAGGACTT CCAAAGAACA 58772 .......... .......... .......... .......... .......... .......... 586 AACAACCTTT CCTCATTAGC TTGTACCATC GGTTGCACAC CTAAGGTGGA TATGTCTTTT 58712 .......... .......... .......... .......... .......... .......... 586 AACTCATCAA CAGAAATATA AAATCATTTT TTTAGTCAAG CTGATCAAAA TCCTCTGAAC 58652 .......... .......... .......... .......... .......... .......... 586 AAGTTTCGTA TATTTAATCA CTTCCCCATA TAAGCTCACA TTTGTTTTGC AATCTCAACA 58592 .......... .......... .......... .......... .......... .......... 586 ACTCCAGGAA AATACTCCTC AACTTTCATC ATCCATCATC TTTATATCCT CAAATTCACT 58532 .......... .......... .......... .......... .......... .......... 586 TTTTAAAATT AGATGCTTAA CCTTTGTGTG ACTCTGTCAT TGCTTGCTGA ATGTATGCTA 58472 .......... .......... .......... .......... .......... .......... 586 CGGCTTTTGC ATCTTCTTCT TTATTCTCCT TTAGAGCCTT CATTCCTACC GCGAAAGAGC 58412 .......... .......... .......... .......... .......... .......... 586 TGCTGTTTTT TAATGAAGAA GTTATGGCGT TACCAAAAAT CACAATTTTC TCCCTTGAAA 58352 .......... .......... .......... .......... .......... .......... 586 CTAGGAACAG ACAGTTGAGC ACGCCTTGTT CACTTGTGCC AATATTTTAG CCTTTCTCTT 58292 .......... .......... .......... .......... .......... .......... 586 CTTCAAGATG TTTTACTCCA AACCCAGATT TTGTATCGAA CAACCTTTGA TACCGCTTTG 58232 .......... .......... .......... .......... .......... .......... 586 TTGGTCTTGT GTTTGAGGAA GTGTAAAATC AAAAAAGTAC TGAGAAATAG TAACTCTAGG 58172 .......... .......... .......... .......... .......... .......... 586 ATGTTTCGTA GCAAGTCTGG AATGGAATGC AGTCACTTAA AAAGAACAGT AGTAGTTTTA 58112 .......... .......... .......... .......... .......... .......... 586 CTGAACGAGC TATTATATTG TTTCAGGAAC AATGGTAATT GCTTTACCTC ATTCTTCTTG 58052 .......... .......... .......... .......... .......... .......... 586 TTCAATACAC TTTGTATATA TTGATATAAT GGAAACTCTC TAGCTTGAGG CTTCTCCAGA 57992 .......... .......... .......... .......... .......... .......... 586 TTCATTTTTT GCGAGGCCTT TAGAATACTC TAGATTCTGA ACAACATATT AACTACTTTC 57932 .......... .......... .......... .......... .......... .......... 586 GAGACAACCA AAATCACTTA TAATTAAGAC AAAGACTACA CTAATTTTAC CTGTATTTGT 57872 .......... .......... .......... .......... .......... .......... 586 GATCCTATGT AATTGGTGTT TGAGCAGAGA TACTGTCGTT GAAGAAGTTA AAACTGATTT 57812 .......... .......... .......... .......... .......... .......... 586 CTTGTCCTAA AGGATTGATG TCATCAAGCT TGCTTGAATG CAGTCAATTA GTCAGTTTAT 57752 .......... .......... .......... .......... .......... .......... 586 GCTGTGAAGT TCTGTGGTAT AGGATTTTTC AGCATTACGA TATATATGAG TAACTAATTA 57692 .......... .......... .......... .......... .......... .......... 586 TAAGCTTTGC TGGACATTTT ACATTTATAG AACTTGCAAT TAAATTCATA TGCTTTAAGT 57632 .......... .......... .......... .......... .......... .......... 586 TTACCTGAAT AAATCTTTTT CAGGTTAAGA GAATTGCTTG CCACATGCAG CAATATTGTT 57572 .......... .......... .......... .......... .......... .......... 586 GCCAGGGAGA ACTAGTGAAA TTATCAATTT TCAGCATACC ACTAGTCCCT ATATTTTCAA 57512 .......... .......... .......... .......... .......... .......... 586 CTACCTAACT TTGACTAATA CAACTTTTCA CTCTCATCTC AACTTTTTTT AATTTGGTAT 57452 .......... .......... .......... .......... .......... .......... 586 TTTTTTTTTT GTTTTGGTAA TGGTAACTTT ACTTCTATAT ATCCATAGGT ATACTACAAC 57392 .......... .......... .......... .......... .......... .......... 586 CTAAGTGTAG TTCCCCTTCA AAAGTGTTAT AACTTACAAC TTGTTATTCA ATTCTGTGCC 57332 .......... .......... .......... .......... .......... .......... 586 TCACAAAAAG TATAAAACAC CACAAATATC TTCTGTTTCA GCTAATAGTT TTTGCTCACA 57272 .......... .......... .......... .......... .......... .......... 586 CCAAAAATAA AAAAGGCCTA AACAATTCAT TCTGAATGTT GTTCTGAGTC CCCTCAAAGC 57212 .......... .......... .......... .......... .......... .......... 586 ACCTTTTGTT CCTCTCAATC CAAATTGACC ACCAAATGCA TGCTGGGACG ATCTTCCATT 57152 .......... .......... .......... .......... .......... .......... 586 TTTCTTCCTT CTTGCTCACA TTACCATCCA TATTCCAGCA TCTAAGAACG TCTGCTATGC 57092 .......... .......... .......... .......... .......... .......... 586 TTCCAGGTTT CACCCAACTA ATCCCTTTCA AACTGATGAA CATCCTCCAA AGTTGGTCTG 57032 .......... .......... .......... .......... .......... .......... 586 TCCATTTGCA ATGCAAAAAA ATATGGTTGA TTGTCTCAGC TTGTTCCCCA CAGAAAAAAC 56972 .......... .......... .......... .......... .......... .......... 586 GCCCGGCGAT TAGTTGGTCA CCCCTTTTGT TCAGATTATC ATGAGTTAAC ACTGTTTCTT 56912 .......... .......... .......... .......... .......... .......... 586 TGGCCAAAAG CCAGATGAAA CAGTTAACTT TGTAGTGAAT TTTTGTTTTG CATATCTTCC 56852 .......... .......... .......... .......... .......... .......... 586 AAGGCCAATC TCTTTCCTTC ACCACTCCTA CATTTAGCAT GCAGATTCGA TGGAATTTTT 56792 .......... .......... .......... .......... .......... .......... 586 TTTTACTGTT TCTATTCCAT TCTAGTCTGT CCACTTCTTC AGTTAAATTG TTGAATCTTG 56732 .......... .......... .......... .......... .......... .......... 586 CTACTAAGTT ATAGAATTCT GTTATCCTCC TGATCTCCCA ATCATTCAAA TATCTCCTTC 56672 .......... .......... .......... .......... .......... .......... 586 GATATAGATT CCATCCTTGT CCAGTCCACA TCATGGCAAC TGGGGCTTGT TGTTGCTGGC 56612 .......... .......... .......... .......... .......... .......... 586 TTAGAGTGTA TAGCTCCGGA TGTTGTTGTT TCCTTGTTAA AAGTGCTGCC CACTTGTCAT 56552 .......... .......... .......... .......... .......... .......... 586 GCCAAAAAGA GGTTTTCTGC CCATTTCCTA TCCTCACCTT AGTTCTGATC TGCATCATTG 56492 .......... .......... .......... .......... .......... .......... 586 GCCAATGATT CCTAATAGCT CTCCAGTCTG AACATCCATA GGGTGTTGTG ACATTCTTAG 56432 .......... .......... .......... .......... .......... .......... 586 TCATCCAATT ATCTTCCATA CCATACTTAG CAAGAATGGC TTCTTTCCAC AACAATACTT 56372 .......... .......... .......... .......... .......... .......... 586 CTTCAGTAGC AAATTTCCAC TACTATTTCT TCATCAGGCT TTGATTCTGC TCTTTCATAT 56312 .......... .......... .......... .......... .......... .......... 586 TCCTGATACT TAGACCTCCT GCTTTCTTGT TCACTAACAG CTCCTCCCAC TTAACTAGGT 56252 .......... .......... .......... .......... .......... .......... 586 GATACTTATT ATCTTCATTC CCCTGCCATA AAAAGTTCCT TCTCAGGACA TCTATTTCTT 56192 .......... .......... .......... .......... .......... .......... 586 GCTAGCACTA GCAGGCATTG GGAAAATGGA CATCAAGTAG GAAGACCAAT GTGTTTTTAG 56132 .......... .......... .......... .......... .......... .......... 586 TTTGCCTCCC ATGGAGAGGT GTTGACTCTT CCAATTTGTA AGCCTGTTCG TACATTTTTC 56072 .......... .......... .......... .......... .......... .......... 586 CACCACCCCA TTCCAAATTG TTGCGGACTT ACTTTTAGCA CCCAAAGACA TTCCAAGATA 56012 .......... .......... .......... .......... .......... .......... 586 TGTAGTTGGA AGCTCCCCTA CTCCTCCTAA TTTGCTTGCT AGAGCATCTA TCTCACTGAT 55952 .......... .......... .......... .......... .......... .......... 586 TGTGTTGATA GGATATATAA AACTCTTCCC CCGGTTTATA TGTAACCCAG AGACTCCTTT 55892 .......... .......... .......... .......... .......... .......... 586 AAAAATTATG AAGATGACCC TCAGTACTAG AACTTGTTCC TCTTTTGTTT CACAAAACAC 55832 .......... .......... .......... .......... .......... .......... 586 TAAGGTGTTA TCTGCATACT GTAAGTGTGT TACTTCTAAA CTGTTTGTCT CGCTCAACTG 55772 .......... .......... .......... .......... .......... .......... 586 GAAACCTTTA ATCCATTTTT TCCTTCTTGC TTTATTAAAT AGATTGCTCA TGCCCTCCAT 55712 .......... .......... .......... .......... .......... .......... 586 TGCCACTATG AACAAAAATG GAGACAAGGG GTCACCCTGT CTCAAACCTT TCAGGGATAA 55652 .......... .......... .......... .......... .......... .......... 586 AAAGAATCCA TTTGGTTCCC TGCTTATTTG CACTGAGAAC TTGACTGTGC TAATGCAATG 55592 .......... .......... .......... .......... .......... .......... 586 CTCTATCCAC TTGATCCACC TAAATGCAAA CCCCATCTTC TCATTAGCTT TATCAGAAAA 55532 .......... .......... .......... .......... .......... .......... 586 TTCCAATTCA AGTGGTCATA TGCCTTCTGA ATGTCCAGCT TGCACATTAT TCCTGGTTTC 55472 .......... .......... .......... .......... .......... .......... 586 TTGTTGTTCT GTCTAGAATC TACAGACTCA TTTGCAATTA AGATTGCACC CGTTATTTGT 55412 .......... .......... .......... .......... .......... .......... 586 CTCCCTTTGA TGAATGTCTT GTTTGCCTAC TAAACCATGG ATCACTTTCT TTAATCATTC 55352 .......... .......... .......... .......... .......... .......... 586 TGCTAATAAC TTAGCTATGA TCTTGTACAC TCCCCCATTC AAGCTTATAG GTTTGTAATC 55292 .......... .......... .......... .......... .......... .......... 586 ATATAGCTCC TCCGCCCCCA CTTTTTTGGA ATCAATGCCG CAAATGTAGC ATTCAGGCTT 55232 .......... .......... .......... .......... .......... .......... 586 TTTTCAAAAA AACCTTTCTC ATGGAAATTC TGCGTTGTAG CTACCAGGTC CACTTTGATT 55172 .......... .......... .......... .......... .......... .......... 586 GTTTCCCAGC ATTGTACTGA ATAAACCATC AGGTCCGGGG GGCTTATCTC CAACACATGC 55112 .......... .......... .......... .......... .......... .......... 586 TTTGATGCTT TCAAAAACAT CTTGGGAACC AAATGGAGCC ATCAATACTA GATTATCCTC 55052 .......... .......... .......... .......... .......... .......... 586 GGCACTAATC CTGGGACAAT TCTCCATTTG AAGTTGTGGT CTCCATTCCT CCCTCAGTTT 54992 .......... .......... .......... .......... .......... .......... 586 CTGTGTCCAG TCTTCCATAG TATGAGACTA TCTCTTGATT TACCTCTCTT GGGTCCTCCA 54932 .......... .......... .......... .......... .......... .......... 586 CCATTAACCC CCCCCCCCCT CCCCCCACAA CCCCCCAACA ACTTTCAACT TAACTATATT 54872 .......... .......... .......... .......... .......... .......... 586 GTTAAATCTC CGGTGGATAT TTGCAGTTTT GGTAACTTCA CTCTCGTCTT AACTTTATGC 54812 .......... .......... .......... .......... .......... .......... 586 AAGTAGTATG GATGTTTAAT TTGTAATAAG AGGTTTCAGA TGGGTGAGTT GGGCTTAATT 54752 .......... .......... .......... .......... .......... .......... 586 TGAGCAGGTC AAGATTGGCT GAGTAATAAA TGGGCAGGTT ATTGACCCGC CCGAAAGCTA 54692 .......... .......... .......... .......... .......... .......... 586 CTTGGGCTAA AATGGGCTAA AACTGCGGAG TTCTTACTAG TTTTAATTGT TTTTTTCGTT 54632 .......... .......... .......... .......... .......... .......... 586 CTATTATAAA TTTTAGTACC TAATATTAGT TTTCTTTATT ATGACTAAAT ATTACATATT 54572 .......... .......... .......... .......... .......... .......... 586 AAATAAAAAA ATGTCTTCTA AACATTTTTG ACAAGATTGC TCATGAGTCA AATTTGGTAA 54512 .......... .......... .......... .......... .......... .......... 586 CATATCAACC CAATTTTTAA TGGACTGACT TAGATTTAGC TTAAATAGGT TGAGCTAATA 54452 .......... .......... .......... .......... .......... .......... 586 AATGAGTGGA TCAATAACCC ACCCAAACTT GAACGGATTG GGCGGGCTGG GTTTGATTTT 54392 .......... .......... .......... .......... .......... .......... 586 GCCACCCCTA TTTGTAATGA TGGAAGTTTA TTTTTCATGT AAGTTCTGTC AGTTTCTTAA 54332 .......... .......... .......... .......... .......... .......... 586 GTATTTGTGT GATAGTTTGT ATGGTAACTG GAAATTTCCT GATGTAATTT CAATCGTTGT 54272 .......... .......... .......... .......... .......... .......... 586 TGCATAAATA TATTGTTGCA GATCTTTCAA TTTTTCTGTT CCAAAGCAAG AAACGTTATC 54212 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .ATCTTTCAA TTTTTCTGTT CCAAAGCAAG AAACGTTATC 625 AAGGCACTCT TTTTTTGGCC CCAATGGTCT TCGTGGTCAA TGGCCAGGAC CTAGTTCTGA 54152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCACTCT TTTTTTGGCC CCAATGGTCT TCGTGGTCAA TGGCCAGGAC CTAGTTCTGA 685 GATAAAGGTA GTTTTGTTCA GTTGAAAGGT AGTTTTGGAT CTTATGATAG AATTCAGCCT 54092 ||||||| GATAAAG... .......... .......... .......... .......... .......... 692 AAACTAAATG ACCTATTTTT TCTTCTTACA GGTTAATTAC CCAGTACATG ATGATCTAGC 54032 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTAATTAC CCAGTACATG ATGATCTAGC 721 TCCAAATGAG ATTTGGAGGT TAGGACCCTG CCAAGTTTAA TTATTGCTAT TGCAGCCTAC 53972 |||||||||| |||||||| TCCAAATGAG ATTTGGAG.. .......... .......... .......... .......... 739 TAAGAGCTAT GAAGTGTTAT AAGACAGATA AATGATTTAG TAATCGTAGT AGCCCAAAAC 53912 .......... .......... .......... .......... .......... .......... 739 TTTTCAATAC TATGTTTCTC TATTTTCTTA TTTCTATAAA TTACTTTGGT ACAGCATTTT 53852 .......... .......... .......... .......... .......... .......... 739 GAATGTTCTT TTACTATTTT TATAGCCTTA ATCCAGTTGA AGATAGACCT TTGGTGTCCA 53792 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CCTTA ATCCAGTTGA AGATAGACCT TTGGTGTCCA 774 AGGACACTAG CTTGATAGTG GATAAGTCTT CTATGGAATC GGTTCTTTCT TTGGATGATG 53732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACACTAG CTTGATAGTG GATAAGTCTT CTATGGAATC GGTTCTTTCT TTGGATGATG 834 GGCGATGGTT ACATCCTACT GAGGATTCCA ATTTTCAATT TCTTGACGAT GTGCGGAGTG 53672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGATGGTT ACATCCTACT GAGGATTCCA ATTTTCAATT TCTTGACGAT GTGCGGAGTG 894 ATAACATTCC TTTGAGTAAC TTAAGGCAAC CTTCGCCTCC TCCAGTTTTG GCACAACTAC 53612 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ATAACATTCC TTTGAGTAAC TTAAGGCAAC CTTCGCCTTC TCCAGTTTTG GCACAACTAC 954 AACAGGAGTT TCGTCCTATA TCTCCGTCCA AAGTTGC 53575 |||||||||| |||||||||| ||| |||||| ||||||| AACAGGAGTT TCGTCCTATA TCTTCGTCCA AAGTTGC 991 hqPGS_C01HBa0216G16.1-_SGN-U323817+ (63151 63003,62398 62334,62240 62165,61916 61716,61317 61223,54250 54145,54060 54014,53826 53575) ******************************************************************************** EST sequence 6 -strand 958 n (File: SGN-U325076-) 1 CTGTGCCTTT AAAAAGTTAA AAACATCACA AATATCTTCT GTTTGAGCTA GTAGTTTTTG 61 CTCACACCAA AAATAATAAA GGCATAAACA ATTCATTTTA AGATTCTGAA TCTTGTTTTG 121 AGTCCCCTCA AAGCACCTTT TGTTCCTCTG AATCCAAATT GACCACCAAA TACATGCTGG 181 GACGATCTTC CATTTTTCTT CCTTCTTGCA CACATTACCA TCCACATTCC AGCATCTTAG 241 AATGTCTGCA ATGCTTCCAG GTTTCACCCA ACTAATCCCT TTCCAACTGA TGAACATCCT 301 CCAAAGCTGG TCTGTCCATT TGCAGTGCAA AAAAAGATGG TTGATTGTCT CAACTTGTTC 361 CCCACATAAA AAACAGCCAG CGGTTAGCTG GTGACCCCTT TTGTTCAGGT TATCATGAGT 421 TAACACTGCT TCTTTGGCCA GAAGCCAGAT GAAACAGTTA ACTTTGTAGG GAATTTTTGG 481 TTTCCATATC ATCTTCCAAG GCCAATCTCT TTCCTTCACC ACTTCTACAT TAGCTCCCTG 541 TATGCAGATT TGACAGAAAA AATTCCCTTA CTGTTTCTGT TCAATTCTAG TCTGTCCACT 601 TCGTCAGTCA GATTGTTGAA ACTTGCTACT GAGTTATAGA ATTCTGTTAT CCTCCCAATC 661 TCCCAATCAT TCAGATATCT CCTTAGATAT AGATTCCATC CTTGTCCAGT CCACATCATG 721 GCAACTGTGG CTTCTTGTTG CTGGCTTAGA GTGTATAGCT CCAGATGTTG TTGTTTCATT 781 GTTCAAAGCC CTGCCCACTT GTCATGCCAA AAGAGGTTTT CTGCCCATTT CCTATCCTCA 841 CCTTAGTTCT GATTTGTATC TTTGGCCAAA GATTCCTAAT AGCTCTCCAG ACTGAACATC 901 CATAGGGTGT TATGACATTC TTAGTCATCC AATTCTCGTG CGAAATTCCT GCAGCCCG Predicted gene structure (within gDNA segment 58181 to 55582): Exon 1 57338 56422 ( 917 n); cDNA 1 934 ( 934 n); score: 0.869 MATCH C01HBa0216G16.1- SGN-U325076- 0.869 917 0.957 C PGS_C01HBa0216G16.1-_SGN-U325076- (57338 56422) Alignment (genomic DNA sequence = upper lines): CTGTGCCTCA CAAAAAGTAT AAAACACCAC AAATATCTTC TGTTTCAGCT AATAGTTTTT 57279 |||||||| ||||||| |||||| ||| |||||||||| ||||| |||| | |||||||| CTGTGCCT-T TAAAAAGTTA AAAACATCAC AAATATCTTC TGTTTGAGCT AGTAGTTTTT 59 GCTCACACCA AAAATAAAAA AGGCCTAAAC AATTCA-TT- ------CTGA ATGTTGTTCT 57227 |||||||||| ||||||| || |||| ||||| |||||| || |||| || ||||| | GCTCACACCA AAAATAATAA AGGCATAAAC AATTCATTTT AAGATTCTGA ATCTTGTTTT 119 GAGTCCCCTC AAAGCACCTT TTGTTCCTCT CAATCCAAAT TGACCACCAA ATGCATGCTG 57167 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| || ||||||| GAGTCCCCTC AAAGCACCTT TTGTTCCTCT GAATCCAAAT TGACCACCAA ATACATGCTG 179 GGACGATCTT CCATTTTTCT TCCTTCTTGC TCACATTACC ATCCATATTC CAGCATCTAA 57107 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||| | GGACGATCTT CCATTTTTCT TCCTTCTTGC ACACATTACC ATCCACATTC CAGCATCTTA 239 GAACGTCTGC TATGCTTCCA GGTTTCACCC AACTAATCCC TTTCAAACTG ATGAACATCC 57047 ||| |||||| ||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GAATGTCTGC AATGCTTCCA GGTTTCACCC AACTAATCCC TTTCCAACTG ATGAACATCC 299 TCCAAAGTTG GTCTGTCCAT TTGCAATGCA AAAAAATATG GTTGATTGTC TCAGCTTGTT 56987 ||||||| || |||||||||| ||||| |||| |||||| ||| |||||||||| ||| |||||| TCCAAAGCTG GTCTGTCCAT TTGCAGTGCA AAAAAAGATG GTTGATTGTC TCAACTTGTT 359 CCCCACAGAA AAAACGCCCG GCGATTAGTT GGTCACCCCT TTTGTTCAGA TTATCATGAG 56927 ||||||| || ||||| || ||| |||| | ||| |||||| ||||||||| |||||||||| CCCCACATAA AAAACAGCCA GCGGTTAGCT GGTGACCCCT TTTGTTCAGG TTATCATGAG 419 TTAACACTGT TTCTTTGGCC AAAAGCCAGA TGAAACAGTT AACTTTGTAG TGAATTTTTG 56867 ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| TTAACACTGC TTCTTTGGCC AGAAGCCAGA TGAAACAGTT AACTTTGTAG GGAATTTTTG 479 TTTTGC--AT -ATCTTCCAA GGCCAATCTC TTTCCTTCAC CACTCCTACA TT---T---A 56816 ||| | || ||||||||| |||||||||| |||||||||| |||| ||||| || | GTTTCCATAT CATCTTCCAA GGCCAATCTC TTTCCTTCAC CACTTCTACA TTAGCTCCCT 539 GCATGCAGAT TCGA-TG-GA ATTTTTTTTT ACTGTTTCTA TTCCATTCTA GTCTGTCCAC 56758 | |||||||| | || | | | || || ||||||||| ||| |||||| |||||||||| GTATGCAGAT TTGACAGAAA AAATTCCCTT ACTGTTTCTG TTCAATTCTA GTCTGTCCAC 599 TTCTTCAGTT AAATTGTTGA ATCTTGCTAC TAAGTTATAG AATTCTGTTA TCCTCCTGAT 56698 ||| ||||| | |||||||| | |||||||| | |||||||| |||||||||| |||||| || TTCGTCAGTC AGATTGTTGA AACTTGCTAC TGAGTTATAG AATTCTGTTA TCCTCCCAAT 659 CTCCCAATCA TTCAAATATC TCCTTCGATA TAGATTCCAT CCTTGTCCAG TCCACATCAT 56638 |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| CTCCCAATCA TTCAGATATC TCCTTAGATA TAGATTCCAT CCTTGTCCAG TCCACATCAT 719 GGCAACTGGG GCTTGTTGTT GCTGGCTTAG AGTGTATAGC TCCGGATGTT GTTGTTTCCT 56578 |||||||| | |||| ||||| |||||||||| |||||||||| ||| |||||| |||||||| | GGCAACTGTG GCTTCTTGTT GCTGGCTTAG AGTGTATAGC TCCAGATGTT GTTGTTTCAT 779 TGTTAAAAGT GCTGCCCACT TGTCATGCCA AAAAGAGGTT TTCTGCCCAT TTCCTATCCT 56518 |||| |||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGTTCAAAGC CCTGCCCACT TGTCATGCC- AAAAGAGGTT TTCTGCCCAT TTCCTATCCT 838 CACCTTAGTT CTGATCTGCA TCATTGGCCA ATGATTCCTA ATAGCTCTCC AGTCTGAACA 56458 |||||||||| ||||| || | || ||||||| | |||||||| |||||||||| || ||||||| CACCTTAGTT CTGATTTGTA TCTTTGGCCA AAGATTCCTA ATAGCTCTCC AGACTGAACA 898 TCCATAGGGT GTTGTGACAT TCTTAGTCAT CCAATT 56422 |||||||||| ||| |||||| |||||||||| |||||| TCCATAGGGT GTTATGACAT TCTTAGTCAT CCAATT 934 hqPGS_C01HBa0216G16.1-_SGN-U325076- (57338 56422) ******************************************************************************** EST sequence 38 +strand 1124 n (File: SGN-U338143+) 1 AATGACCCGC GGTGGGGCGC TCTAGAATAG TGGATCCCCC GGGCTGCAGG AATTCGGCAC 61 GAGGCAATAA TAAAAAGGCC TAAACAATTC ATTTTAAGAT TCTGAATGTT GTTCTGAGTC 121 CCCTCAAAGC ACCTTTTGTT CCTCTCAATC CAAATTGACC ACCAAATGCA TGCCCGGACG 181 ATCTTCCATC TTTCTTCCTT CTTGCTCACA TTACCATCCA TATTCCAGTA TCTTAGAATG 241 TCTGCAATGC TTACAGGTTT CAACTTTCAC CAAATGACCC AACTAATTCC TTTCAGACTG 301 ACGAACATCC TCCAAAGCTG GTCTGTCCAT TTGCAGTGTA AAAAAAGATG GTTGATTGTC 361 TCAGCTTGTT CCCCAAATAA AAAACACCCA GCTGTTAGAT GGTGACTTTG TTCAGATTAT 421 CATGAGTTAA AACTGCTTCT TTGCCAAAAG CTAGATGAAA CAGTTAACTT AGTAAGGAAT 481 TTCTGGTTTC TATATCATCT TCCAAGGACA ATCTCTTTCC TTCACCACTC CTACATTTAG 541 CTCCTTGTAT GCAGATTTGA CAGAAAACGT TTCTCTTACT GTTTCTGTTT CTGTTCCATA 601 CTAGTCTGTC CACTTCTTCG GTCAGATTGT TGAATCTTGC TACTGAGTTA TAGAATTCTG 661 TTATCCTCCC GATCTCCCAA TCATTCAGAT ATCTCCCTAG ATATAGATTC CATCCTTGTC 721 AAGTCCACAT CATGGCAACT GTGGCTTGTT GTTGCTGGCT TAGAGTGTAT TGCTCTGGAT 781 GTTGTTCATT CATTGTTAAA AGCCCTACCT ATTTGTCTTG CCAAAAAGAG GTTTTCTGCC 841 CATTTCCTAT CCTCACCTTA GTTCTGATCT GCATCATTGG CCAAAGATTC CTAATAGCTC 901 TTGAAACTGA ACATCCATGG GGTGTTGTTA CAGCAATTAT GCCTGTCTCC AGATAGATGG 961 TTACCTATGA ACAAATGGGT TTTTATTTTA AGGTTTGTTT TGGGGAAATA TCCCTAATCC 1021 AAAGTACAAA TGGTTTTTTT GAAAAAGTGC CTTTCTTAGG AAATTTTAAA AAAAACTCTA 1081 AAAAAAAAAA TTTCCAAAAC CCTATTCAAA CCCCACCCCA AAAA Predicted gene structure (within gDNA segment 58823 to 52430): Exon 1 57627 57609 ( 19 n); cDNA 80 98 ( 19 n); score: 0.737 Intron 1 57608 57244 ( 365 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 57243 56440 ( 804 n); cDNA 99 931 ( 833 n); score: 0.805 Intron 2 56439 56161 ( 279 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0) Exon 3 56160 56156 ( 5 n); cDNA 932 936 ( 5 n); score: 0.800 Intron 3 56155 54846 (1310 n); Pd: 0.530 (s: 0), Pa: 0.246 (s: 0) Exon 4 54845 54841 ( 5 n); cDNA 937 941 ( 5 n); score: 0.800 Intron 4 54840 53341 (1500 n); Pd: 0.606 (s: 0), Pa: 0.998 (s: 0) Exon 5 53340 53312 ( 29 n); cDNA 942 969 ( 28 n); score: 0.552 Intron 5 53311 53151 ( 161 n); Pd: 0.472 (s: 0), Pa: 0.987 (s: 0) Exon 6 53150 53136 ( 15 n); cDNA 970 984 ( 15 n); score: 0.733 PPA cDNA 1080 1091 MATCH C01HBa0216G16.1- SGN-U338143+ 0.805 877 0.780 C PGS_C01HBa0216G16.1-_SGN-U338143+ (57627 57609,57243 56440,56160 56156,54845 54841,53340 53312,53150 53136) Alignment (genomic DNA sequence = upper lines): CTGAATAAAT CTTTTTCAGG TTAAGAGAAT TGCTTGCCAC ATGCAGCAAT ATTGTTGCCA 57568 || || || | | |||| || CTAAACAATT CATTTTAAG. .......... .......... .......... .......... 98 GGGAGAACTA GTGAAATTAT CAATTTTCAG CATACCACTA GTCCCTATAT TTTCAACTAC 57508 .......... .......... .......... .......... .......... .......... 98 CTAACTTTGA CTAATACAAC TTTTCACTCT CATCTCAACT TTTTTTAATT TGGTATTTTT 57448 .......... .......... .......... .......... .......... .......... 98 TTTTTTGTTT TGGTAATGGT AACTTTACTT CTATATATCC ATAGGTATAC TACAACCTAA 57388 .......... .......... .......... .......... .......... .......... 98 GTGTAGTTCC CCTTCAAAAG TGTTATAACT TACAACTTGT TATTCAATTC TGTGCCTCAC 57328 .......... .......... .......... .......... .......... .......... 98 AAAAAGTATA AAACACCACA AATATCTTCT GTTTCAGCTA ATAGTTTTTG CTCACACCAA 57268 .......... .......... .......... .......... .......... .......... 98 AAATAAAAAA GGCCTAAACA ATTCATTCTG AATGTTGTTC TGAGTCCCCT CAAAGCACCT 57208 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....ATTCTG AATGTTGTTC TGAGTCCCCT CAAAGCACCT 134 TTTGTTCCTC TCAATCCAAA TTGACCACCA AATGCATGCT GGGACGATCT TCCATTTTTC 57148 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| ||||| |||| TTTGTTCCTC TCAATCCAAA TTGACCACCA AATGCATGCC CGGACGATCT TCCATCTTTC 194 TTCCTTCTTG CTCACATTAC CATCCATATT CCAGCATCTA AGAACGTCTG CTATGCTTCC 57088 |||||||||| |||||||||| |||||||||| |||| |||| |||| ||||| | |||||| | TTCCTTCTTG CTCACATTAC CATCCATATT CCAGTATCTT AGAATGTCTG CAATGCTTAC 254 AGG------- TTT---C--- --ACCCAACT AATCCCTTTC AAACTGATGA ACATCCTCCA 57043 ||| ||| | |||||||| ||| |||||| | ||||| || |||||||||| AGGTTTCAAC TTTCACCAAA TGACCCAACT AATTCCTTTC AGACTGACGA ACATCCTCCA 314 AAGTTGGTCT GTCCATTTGC AATGCAAAAA AATATGGTTG ATTGTCTCAG CTTGTTCCCC 56983 ||| |||||| |||||||||| | || ||||| || ||||||| |||||||||| |||||||||| AAGCTGGTCT GTCCATTTGC AGTGTAAAAA AAGATGGTTG ATTGTCTCAG CTTGTTCCCC 374 ACAGAAAAAA CGCCCGGCGA TTAGTTGGTC ACCCCTTTTG TTCAGATTAT CATGAGTTAA 56923 | | |||||| | ||| || |||| |||| | | |||| |||||||||| |||||||||| AAATAAAAAA CACCCAGCTG TTAGATGGTG A---C-TTTG TTCAGATTAT CATGAGTTAA 430 CACTGTTTCT TTGGCCAAAA GCCAGATGAA ACAGTTAACT TTGTAGTGAA TTT-TTGTTT 56864 |||| |||| || ||||||| || ||||||| |||||||||| | ||| ||| ||| | |||| AACTGCTTCT TT-GCCAAAA GCTAGATGAA ACAGTTAACT TAGTAAGGAA TTTCTGGTTT 489 -TGCAT-ATC TTCCAAGGCC AATCTCTTTC CTTCACCACT CCTACATTTA G---C----A 56813 | || ||| |||||||| | |||||||||| |||||||||| |||||||||| | | | CTATATCATC TTCCAAGGAC AATCTCTTTC CTTCACCACT CCTACATTTA GCTCCTTGTA 549 TGCAGATTCG A-TG-GAA-- TTT-T-TT-- T-TTACTGTT TCTATTCCAT TCTAGTCTGT 56762 |||||||| | | | || ||| | || | || ||||| ||| |||||| ||||||||| TGCAGATTTG ACAGAAAACG TTTCTCTTAC TGTTTCTGTT TCTGTTCCAT ACTAGTCTGT 609 CCACTTCTTC AGTTAAATTG TTGAATCTTG CTACTAAGTT ATAGAATTCT GTTATCCTCC 56702 |||||||||| || | |||| |||||||||| ||||| |||| |||||||||| |||||||||| CCACTTCTTC GGTCAGATTG TTGAATCTTG CTACTGAGTT ATAGAATTCT GTTATCCTCC 669 TGATCTCCCA ATCATTCAAA TATCTCCTTC GATATAGATT CCATCCTTGT CCAGTCCACA 56642 ||||||||| |||||||| | ||||||| | |||||||||| |||||||||| | |||||||| CGATCTCCCA ATCATTCAGA TATCTCCCTA GATATAGATT CCATCCTTGT CAAGTCCACA 729 TCATGGCAAC TGGGGCTTGT TGTTGCTGGC TTAGAGTGTA TAGCTCCGGA TGTTGTTGTT 56582 |||||||||| || ||||||| |||||||||| |||||||||| | |||| ||| ||||||| | TCATGGCAAC TGTGGCTTGT TGTTGCTGGC TTAGAGTGTA TTGCTCTGGA TGTTGTTCAT 789 TCCTTGTTAA AAGTGCTGCC CACTTGTCAT GCCAAAAAGA GGTTTTCTGC CCATTTCCTA 56522 || ||||||| ||| || || | ||||| | |||||||||| |||||||||| |||||||||| TCATTGTTAA AAGCCCTACC TATTTGTCTT GCCAAAAAGA GGTTTTCTGC CCATTTCCTA 849 TCCTCACCTT AGTTCTGATC TGCATCATTG GCCAATGATT CCTAATAGCT CTCCAGTCTG 56462 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| || | ||| TCCTCACCTT AGTTCTGATC TGCATCATTG GCCAAAGATT CCTAATAGCT CTTGAAACTG 909 AACATCCATA GGGTGTTGTG ACATTCTTAG TCATCCAATT ATCTTCCATA CCATACTTAG 56402 ||||||||| ||||||||| || AACATCCATG GGGTGTTGTT AC........ .......... .......... .......... 931 CAAGAATGGC TTCTTTCCAC AACAATACTT CTTCAGTAGC AAATTTCCAC TACTATTTCT 56342 .......... .......... .......... .......... .......... .......... 931 TCATCAGGCT TTGATTCTGC TCTTTCATAT TCCTGATACT TAGACCTCCT GCTTTCTTGT 56282 .......... .......... .......... .......... .......... .......... 931 TCACTAACAG CTCCTCCCAC TTAACTAGGT GATACTTATT ATCTTCATTC CCCTGCCATA 56222 .......... .......... .......... .......... .......... .......... 931 AAAAGTTCCT TCTCAGGACA TCTATTTCTT GCTAGCACTA GCAGGCATTG GGAAAATGGA 56162 .......... .......... .......... .......... .......... .......... 931 CATCAAGTAG GAAGACCAAT GTGTTTTTAG TTTGCCTCCC ATGGAGAGGT GTTGACTCTT 56102 | ||| .AGCAA.... .......... .......... .......... .......... .......... 936 CCAATTTGTA AGCCTGTTCG TACATTTTTC CACCACCCCA TTCCAAATTG TTGCGGACTT 56042 .......... .......... .......... .......... .......... .......... 936 ACTTTTAGCA CCCAAAGACA TTCCAAGATA TGTAGTTGGA AGCTCCCCTA CTCCTCCTAA 55982 .......... .......... .......... .......... .......... .......... 936 TTTGCTTGCT AGAGCATCTA TCTCACTGAT TGTGTTGATA GGATATATAA AACTCTTCCC 55922 .......... .......... .......... .......... .......... .......... 936 CCGGTTTATA TGTAACCCAG AGACTCCTTT AAAAATTATG AAGATGACCC TCAGTACTAG 55862 .......... .......... .......... .......... .......... .......... 936 AACTTGTTCC TCTTTTGTTT CACAAAACAC TAAGGTGTTA TCTGCATACT GTAAGTGTGT 55802 .......... .......... .......... .......... .......... .......... 936 TACTTCTAAA CTGTTTGTCT CGCTCAACTG GAAACCTTTA ATCCATTTTT TCCTTCTTGC 55742 .......... .......... .......... .......... .......... .......... 936 TTTATTAAAT AGATTGCTCA TGCCCTCCAT TGCCACTATG AACAAAAATG GAGACAAGGG 55682 .......... .......... .......... .......... .......... .......... 936 GTCACCCTGT CTCAAACCTT TCAGGGATAA AAAGAATCCA TTTGGTTCCC TGCTTATTTG 55622 .......... .......... .......... .......... .......... .......... 936 CACTGAGAAC TTGACTGTGC TAATGCAATG CTCTATCCAC TTGATCCACC TAAATGCAAA 55562 .......... .......... .......... .......... .......... .......... 936 CCCCATCTTC TCATTAGCTT TATCAGAAAA TTCCAATTCA AGTGGTCATA TGCCTTCTGA 55502 .......... .......... .......... .......... .......... .......... 936 ATGTCCAGCT TGCACATTAT TCCTGGTTTC TTGTTGTTCT GTCTAGAATC TACAGACTCA 55442 .......... .......... .......... .......... .......... .......... 936 TTTGCAATTA AGATTGCACC CGTTATTTGT CTCCCTTTGA TGAATGTCTT GTTTGCCTAC 55382 .......... .......... .......... .......... .......... .......... 936 TAAACCATGG ATCACTTTCT TTAATCATTC TGCTAATAAC TTAGCTATGA TCTTGTACAC 55322 .......... .......... .......... .......... .......... .......... 936 TCCCCCATTC AAGCTTATAG GTTTGTAATC ATATAGCTCC TCCGCCCCCA CTTTTTTGGA 55262 .......... .......... .......... .......... .......... .......... 936 ATCAATGCCG CAAATGTAGC ATTCAGGCTT TTTTCAAAAA AACCTTTCTC ATGGAAATTC 55202 .......... .......... .......... .......... .......... .......... 936 TGCGTTGTAG CTACCAGGTC CACTTTGATT GTTTCCCAGC ATTGTACTGA ATAAACCATC 55142 .......... .......... .......... .......... .......... .......... 936 AGGTCCGGGG GGCTTATCTC CAACACATGC TTTGATGCTT TCAAAAACAT CTTGGGAACC 55082 .......... .......... .......... .......... .......... .......... 936 AAATGGAGCC ATCAATACTA GATTATCCTC GGCACTAATC CTGGGACAAT TCTCCATTTG 55022 .......... .......... .......... .......... .......... .......... 936 AAGTTGTGGT CTCCATTCCT CCCTCAGTTT CTGTGTCCAG TCTTCCATAG TATGAGACTA 54962 .......... .......... .......... .......... .......... .......... 936 TCTCTTGATT TACCTCTCTT GGGTCCTCCA CCATTAACCC CCCCCCCCCT CCCCCCACAA 54902 .......... .......... .......... .......... .......... .......... 936 CCCCCCAACA ACTTTCAACT TAACTATATT GTTAAATCTC CGGTGGATAT TTGCAGTTTT 54842 || | .......... .......... .......... .......... .......... ......TTAT 940 GGTAACTTCA CTCTCGTCTT AACTTTATGC AAGTAGTATG GATGTTTAAT TTGTAATAAG 54782 | G......... .......... .......... .......... .......... .......... 941 AGGTTTCAGA TGGGTGAGTT GGGCTTAATT TGAGCAGGTC AAGATTGGCT GAGTAATAAA 54722 .......... .......... .......... .......... .......... .......... 941 TGGGCAGGTT ATTGACCCGC CCGAAAGCTA CTTGGGCTAA AATGGGCTAA AACTGCGGAG 54662 .......... .......... .......... .......... .......... .......... 941 TTCTTACTAG TTTTAATTGT TTTTTTCGTT CTATTATAAA TTTTAGTACC TAATATTAGT 54602 .......... .......... .......... .......... .......... .......... 941 TTTCTTTATT ATGACTAAAT ATTACATATT AAATAAAAAA ATGTCTTCTA AACATTTTTG 54542 .......... .......... .......... .......... .......... .......... 941 ACAAGATTGC TCATGAGTCA AATTTGGTAA CATATCAACC CAATTTTTAA TGGACTGACT 54482 .......... .......... .......... .......... .......... .......... 941 TAGATTTAGC TTAAATAGGT TGAGCTAATA AATGAGTGGA TCAATAACCC ACCCAAACTT 54422 .......... .......... .......... .......... .......... .......... 941 GAACGGATTG GGCGGGCTGG GTTTGATTTT GCCACCCCTA TTTGTAATGA TGGAAGTTTA 54362 .......... .......... .......... .......... .......... .......... 941 TTTTTCATGT AAGTTCTGTC AGTTTCTTAA GTATTTGTGT GATAGTTTGT ATGGTAACTG 54302 .......... .......... .......... .......... .......... .......... 941 GAAATTTCCT GATGTAATTT CAATCGTTGT TGCATAAATA TATTGTTGCA GATCTTTCAA 54242 .......... .......... .......... .......... .......... .......... 941 TTTTTCTGTT CCAAAGCAAG AAACGTTATC AAGGCACTCT TTTTTTGGCC CCAATGGTCT 54182 .......... .......... .......... .......... .......... .......... 941 TCGTGGTCAA TGGCCAGGAC CTAGTTCTGA GATAAAGGTA GTTTTGTTCA GTTGAAAGGT 54122 .......... .......... .......... .......... .......... .......... 941 AGTTTTGGAT CTTATGATAG AATTCAGCCT AAACTAAATG ACCTATTTTT TCTTCTTACA 54062 .......... .......... .......... .......... .......... .......... 941 GGTTAATTAC CCAGTACATG ATGATCTAGC TCCAAATGAG ATTTGGAGGT TAGGACCCTG 54002 .......... .......... .......... .......... .......... .......... 941 CCAAGTTTAA TTATTGCTAT TGCAGCCTAC TAAGAGCTAT GAAGTGTTAT AAGACAGATA 53942 .......... .......... .......... .......... .......... .......... 941 AATGATTTAG TAATCGTAGT AGCCCAAAAC TTTTCAATAC TATGTTTCTC TATTTTCTTA 53882 .......... .......... .......... .......... .......... .......... 941 TTTCTATAAA TTACTTTGGT ACAGCATTTT GAATGTTCTT TTACTATTTT TATAGCCTTA 53822 .......... .......... .......... .......... .......... .......... 941 ATCCAGTTGA AGATAGACCT TTGGTGTCCA AGGACACTAG CTTGATAGTG GATAAGTCTT 53762 .......... .......... .......... .......... .......... .......... 941 CTATGGAATC GGTTCTTTCT TTGGATGATG GGCGATGGTT ACATCCTACT GAGGATTCCA 53702 .......... .......... .......... .......... .......... .......... 941 ATTTTCAATT TCTTGACGAT GTGCGGAGTG ATAACATTCC TTTGAGTAAC TTAAGGCAAC 53642 .......... .......... .......... .......... .......... .......... 941 CTTCGCCTCC TCCAGTTTTG GCACAACTAC AACAGGAGTT TCGTCCTATA TCTCCGTCCA 53582 .......... .......... .......... .......... .......... .......... 941 AAGTTGCAGA TCCAAGACCT GGGCCCGCTA AGTGCATTCA GGATGTACCG TCTAGTTCAA 53522 .......... .......... .......... .......... .......... .......... 941 ATTCTTTTCA ACATTTGCAT GTTGTGAGTT CTTATTTTAT TTTACATTAT TTTGGCTTCT 53462 .......... .......... .......... .......... .......... .......... 941 GTATCTCCTT GATCAATTGT AGGAAATTTT GTGTTATAGC CTTTGCAGTT GTAGTTTTAA 53402 .......... .......... .......... .......... .......... .......... 941 ATCAGCTTTA CCTGATAAAT TTTGCTAGTA TGACCTTTTC TTCTTTTTTC TTATTCTGTA 53342 .......... .......... .......... .......... .......... .......... 941 GCCAGTGAGA CTGATGGAAG ATTTCTTGAG GTTAGCTCGA GAAAATACAA AAAAGAATTT 53282 || || | ||| || | || | | | .CCTGT-CTC CAGATAGATG GTTACCTATG .......... .......... .......... 969 AGAAACTTGT GGAGTTCTTG CTGGTTCACT GGTATGAATT AAACACAGTA AATCTAAAGG 53222 .......... .......... .......... .......... .......... .......... 969 CTAATTACTA AATATGAAAT TTATGAACTC TACTTATGTG ATAATTATGT GTTGTATTCC 53162 .......... .......... .......... .......... .......... .......... 969 TCAACTTGCA GAAAAACCGT GTTTTT 53136 || || | |||||| .......... .AACAAATGG GTTTTT 984 hqPGS_C01HBa0216G16.1-_SGN-U338143+ (57243 56440) ******************************************************************************** EST sequence 40 -strand 526 n (File: SGN-U330196-) 1 TTTTTTTTTT TCAACAATTC ATCTTGAAGT ATTCACATTA GTGAAATATT ACATTTGACA 61 GAACATACTG AATTTGCTAA TACATGTTAG TAATTCACAC TAAAACAATT TTCCAAGAGA 121 AACATGCTAT TGTTCCTCAT ACAAGCATTT AGTAACAGAA ATACATTGAT ACAGGGGCTT 181 GTGTCTTGAT GATTAGTGAT TACTTAGCTA GGAGGGCTTC TGGAAATATC GAAATATGGC 241 AAAGACCAAT CTCAGATTCC AAATAAAATG TTAAAAAGGG ACAGCATCAC TTCCTCGTAA 301 TCCTTCCTTT TGCGAATCTG CTAGGCTAAG TACTCAGTAG TGGTTGGACT TGTCATTACA 361 CATTACTCCT TTTAACCCCA AAAGAATAAC CACCCCAGCC TCAACGGGCC AACTTAGAAC 421 AGAACATCGA CACTTTTTTT TTAATCATGC ATGCTGAGAT AAAAGTTCTC AACCAACACA 481 GACAATCAGA TATCTCCATA TCCTACATTA CGAGGGCCTT AAGGCA Predicted gene structure (within gDNA segment 69764 to 71589): Exon 1 70474 70989 ( 516 n); cDNA 11 526 ( 516 n); score: 1.000 PPA cDNA 10 1 MATCH C01HBa0216G16.1+ SGN-U330196- 1.000 516 0.981 C PGS_C01HBa0216G16.1+_SGN-U330196- (70474 70989) Alignment (genomic DNA sequence = upper lines): TCAACAATTC ATCTTGAAGT ATTCACATTA GTGAAATATT ACATTTGACA GAACATACTG 70533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACAATTC ATCTTGAAGT ATTCACATTA GTGAAATATT ACATTTGACA GAACATACTG 70 AATTTGCTAA TACATGTTAG TAATTCACAC TAAAACAATT TTCCAAGAGA AACATGCTAT 70593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGCTAA TACATGTTAG TAATTCACAC TAAAACAATT TTCCAAGAGA AACATGCTAT 130 TGTTCCTCAT ACAAGCATTT AGTAACAGAA ATACATTGAT ACAGGGGCTT GTGTCTTGAT 70653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCTCAT ACAAGCATTT AGTAACAGAA ATACATTGAT ACAGGGGCTT GTGTCTTGAT 190 GATTAGTGAT TACTTAGCTA GGAGGGCTTC TGGAAATATC GAAATATGGC AAAGACCAAT 70713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAGTGAT TACTTAGCTA GGAGGGCTTC TGGAAATATC GAAATATGGC AAAGACCAAT 250 CTCAGATTCC AAATAAAATG TTAAAAAGGG ACAGCATCAC TTCCTCGTAA TCCTTCCTTT 70773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGATTCC AAATAAAATG TTAAAAAGGG ACAGCATCAC TTCCTCGTAA TCCTTCCTTT 310 TGCGAATCTG CTAGGCTAAG TACTCAGTAG TGGTTGGACT TGTCATTACA CATTACTCCT 70833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGAATCTG CTAGGCTAAG TACTCAGTAG TGGTTGGACT TGTCATTACA CATTACTCCT 370 TTTAACCCCA AAAGAATAAC CACCCCAGCC TCAACGGGCC AACTTAGAAC AGAACATCGA 70893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAACCCCA AAAGAATAAC CACCCCAGCC TCAACGGGCC AACTTAGAAC AGAACATCGA 430 CACTTTTTTT TTAATCATGC ATGCTGAGAT AAAAGTTCTC AACCAACACA GACAATCAGA 70953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTTTTT TTAATCATGC ATGCTGAGAT AAAAGTTCTC AACCAACACA GACAATCAGA 490 TATCTCCATA TCCTACATTA CGAGGGCCTT AAGGCA 70989 |||||||||| |||||||||| |||||||||| |||||| TATCTCCATA TCCTACATTA CGAGGGCCTT AAGGCA 526 hqPGS_C01HBa0216G16.1+_SGN-U330196- (70474 70989) ******************************************************************************** EST sequence 17 +strand 1175 n (File: SGN-U320874+) 1 CTATGAGAAA TCCACCAATC CACATGTGAT GTGTGAACAA TGACAGTTGT GTACCATAGT 61 CAGTAGCTAG ATACGGATAA GGGGGCATGG AATACATATG ATGAGCTACA ACAATGGTTA 121 AAGAGCCTAA CATAGCTAAG TTAAGAGATA ATTGAGCATG CCATGACGTT GTTAGGATCT 181 CATATAGGCC TTTATGGCCC TGACCTGTAA ATGGACCTTT ATGGGCTTCT AAAATATCTT 241 TTAGTCCATG ACCAATACCC CAGTTGGTCC TATACATGTG ACCCGCTATC AGGAAAAGAA 301 TTGCAATAGC TAAATGGTGA TGGGCAATAT CAGTCAGCCA CAGACCCCCA GTTACTGGAT 361 CTAATCCTCC ACGAAAAGTA AGAAAGTCTG CATATTTTGA CCAATTCAAG GTGAAAAACG 421 GGGTTGCTCC CTCGGCAAAA CTGGGATAAA GTTGAGCCAA AAGATCTCGA TTCAAGATAA 481 ATTCATGAGG AAGTGGTATC TCTTTAGGAT CTACTCCAGC GTTTAGAAAT TGGTTAATCG 541 GTAAAGAGAC ATGTACTTGA TGCCCCGCCC AAGAGAGAGA CCCAAGTCCT AGTAGCCCTG 601 CCAAATGGTG ATTCAGCATA GATTCTACAT CTTGAAACCA AGCCAATTTT GGCGCCGCTT 661 TATGATAATG AAACCAACCA GCAAAAAGCA TTAACGCTGC AAAGACCAAT GCCCCAATTG 721 CTGTACAATA GAGTTGTAAT TCACTAGTTA TTCCAGATGC TCGCCAAAGC TGAAAAAAAC 781 CAGAGGTTAT TTGTATTCCT CGGAAACCTC CGCCTACGTC ACCATTTAAT ATTTCTTGGC 841 CTACTATTGG CCAAACCACC TGGGCACTAG GCCCAATGTG AGTTGGATCA CTTAGCCACG 901 CTTCATAATT AGAAAAACGA GCACCGTGGA AATACATGCC GCTCAGCCAA AGAAAGATGA 961 TGGAGAGTTG ACCGAAATGT GCACTAAATA CTTTTCGAGA GATCTCCTCC AAATCACTGG 1021 TATGGCTATC GAAATCGTGA GCATCAGCAT GTAGGTTCCA GATCCAAGTG GTAGTATCAG 1081 GCCCTTTAGC TATTGTTCTT GAGAAATGAC CCGGTCTGGC CCATTCCTCG AAAGAAGTTT 1141 TTACGGGATC CCTATCTACC AAAATTTTAA CTTCT Predicted gene structure (within gDNA segment 76125 to 88409): Exon 1 81045 81118 ( 74 n); cDNA 433 506 ( 74 n); score: 1.000 Intron 1 81119 85942 (4824 n); Pd: 0.000 (s: 1.00), Pa: 0.995 (s: 0) Exon 2 85943 85955 ( 13 n); cDNA 507 519 ( 13 n); score: 0.769 Intron 2 85956 86522 ( 567 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 86523 86545 ( 23 n); cDNA 520 542 ( 23 n); score: 0.652 Intron 3 86546 87267 ( 722 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 87268 87303 ( 36 n); cDNA 543 577 ( 35 n); score: 0.639 MATCH C01HBa0216G16.1+ SGN-U320874+ 1.000 146 0.124 C PGS_C01HBa0216G16.1+_SGN-U320874+ (81045 81118,85943 85955,86523 86545,87268 87303) Alignment (genomic DNA sequence = upper lines): CGGCAAAACT GGGATAAAGT TGAGCCAAAA GATCTCGATT CAAGATAAAT TCATGAGGAA 81104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCAAAACT GGGATAAAGT TGAGCCAAAA GATCTCGATT CAAGATAAAT TCATGAGGAA 492 GTGGTATCTC TTTAGAATTC CGATTGTTGT GAAAGTTACT GAATGAATCT ATTTCATTCT 81164 |||||||||| |||| GTGGTATCTC TTTA...... .......... .......... .......... .......... 506 AATTCGATCT AAGAAGAAAA AAATCACGCT CTGTAGGATT TGAACCTACG ACATCGGGTT 81224 .......... .......... .......... .......... .......... .......... 506 TTGGAGACCC ACGTTCTACC CTAAAGTTTT AGTATGCCAA CCTTGAGGGA AGAAACCAAG 81284 .......... .......... .......... .......... .......... .......... 506 TCGGCGACAA AAAGGGTCAA TCGGCGAATC ATCGAGAATT TTCGTGATGC AAAGAGAGAA 81344 .......... .......... .......... .......... .......... .......... 506 TGCCCAAAGT TATAAGACTC GAGGATGGTA AAAGGCCAAG GCAAAAAGTG ATATGAGAGA 81404 .......... .......... .......... .......... .......... .......... 506 GCATTGGGCG GATCACTGAA TAGTTCAGCG AACTCAACTT ACTATGGCTA ATGGACCTTC 81464 .......... .......... .......... .......... .......... .......... 506 GTGGCTTAAT TTAACCATCT ATAAATTAGA TTAACAATTA TTTTAATATG TTTAGCTAGA 81524 .......... .......... .......... .......... .......... .......... 506 CTGAAAAAGG CAGAATTAGT TTAGAACACT TCTCTCTTGA GTTTTTCATA GTTTCTTAGC 81584 .......... .......... .......... .......... .......... .......... 506 AAACTTAAAG GTCTTTGGAG ATTCGATTTG AAGATTTTCA AGTGGGTTTC GAATTTCTAT 81644 .......... .......... .......... .......... .......... .......... 506 AAATTGAAGT ATCTTAAGAT TAATTACTCT TACCCAGTTG ATGGCTAATC GATTTGGTAA 81704 .......... .......... .......... .......... .......... .......... 506 CTGTTTTTAC TCCATTATGG TGTTTGGCTA AAACCACAAT TCTTGGGGTG TGATCATGTA 81764 .......... .......... .......... .......... .......... .......... 506 ATTATGGGTT GAATTAGTTT ATGGATATTG TTAATTACTA GCTTAAATGC TAAATTTAAG 81824 .......... .......... .......... .......... .......... .......... 506 TGTGATTTTA ATCATTAATT GTGGTTCAGT CTACGAGTTG TAGTTGCAAA TCCACTTCTA 81884 .......... .......... .......... .......... .......... .......... 506 ATTTTATGTT CTTACCTTGC TCGAGAAGTT TTAAAACTAA TATTCTTGAT TAATGATTTG 81944 .......... .......... .......... .......... .......... .......... 506 TAAGTATTGA GTTGAGATGG GTTTAGCTTT ATAGAGTGAA TCCTAAACGA ATCCTACTCA 82004 .......... .......... .......... .......... .......... .......... 506 TCTAGCTTGA GATAGTGGAT AAATTAAAGT GTGGGATGTT CTTCATTGTT ATGTTTGTTG 82064 .......... .......... .......... .......... .......... .......... 506 ATGTTCAAAA TAATTAACCT GATCCTGGAT AGTTGTTCGA GAGAAAGCTA TGTCCCTTAT 82124 .......... .......... .......... .......... .......... .......... 506 ATAGTCTAGT CTACTCAATG ATTTTTAGTT GCTTTCTATT AGTTTCAGTT ACCCATATAT 82184 .......... .......... .......... .......... .......... .......... 506 CAAATTTTTC CTACGAACGG TCACATCCCG AGGATTTCTC TCCTTATTGT TATTTCAAAT 82244 .......... .......... .......... .......... .......... .......... 506 TGTTTGTGAC TGCGTTGTAG TTAATAATTG CAAACCAAAA TCCCCCATCT GACATTCGTG 82304 .......... .......... .......... .......... .......... .......... 506 TCACTCATTT TAACTTGTTT CATGTCTTTT CTCGATAATT TCTATTCCTA TAGCTGATTA 82364 .......... .......... .......... .......... .......... .......... 506 GAACATGTTT GTACTTCCTA ATTAAATTTG AACACGTAAA GCTCTCTGTG GGATTCAACG 82424 .......... .......... .......... .......... .......... .......... 506 CTAACTCTTT GTTGGATTTT ATACTGACTA ACGATCATTT GCACCTAGAT TCAGATAAGG 82484 .......... .......... .......... .......... .......... .......... 506 TGTGCTTAAA ACGTTAATCA AAATGGTGTC GCTGCCGGGG AGTAATGTTG TTTAAATTCT 82544 .......... .......... .......... .......... .......... .......... 506 TTTGGTGAAG TTGAATAGTG ATCTTTTTAG TTATAGTTGA TTCAACCTAT TTTAGTTTTT 82604 .......... .......... .......... .......... .......... .......... 506 GTTATGTATT GCTTGTGTTA AGTAAAGGAG GAGATGAGTG TTAACATAAG TAGTAGTATC 82664 .......... .......... .......... .......... .......... .......... 506 CAAGTGGGCC ACCAAGATGA CGTTGGAAAC TTCAATGACT TAAATAATCC TAATGTGAAT 82724 .......... .......... .......... .......... .......... .......... 506 GACCCAATTT CATTGGGTAG CGTGCAACAA TAAGTCTACC TCTAATTGAA GGAAATGTTG 82784 .......... .......... .......... .......... .......... .......... 506 TTTTCCACAT CAATTCCATT GGGTAGTGTG GAGCAATACA TCTAAATCTA ATTGAAGAAA 82844 .......... .......... .......... .......... .......... .......... 506 ATGTTGTTTT TCACATCACC GCACAGTGCT TTACAACTGA AGGGTTTGTC TGGGGGCTGA 82904 .......... .......... .......... .......... .......... .......... 506 CTTATGAGGA TCCTATGAGC ATATTCGAAA CTTTGTGGAC GTTTGTGTTC CATTCTCATT 82964 .......... .......... .......... .......... .......... .......... 506 CAAGAGAATA TCGCAAAAAT TAGTCCATCT TAGGTTATTC CCATTTTCTC TAATGGGAGA 83024 .......... .......... .......... .......... .......... .......... 506 GGCTAGTAAG TGGTTTACCG AGTTTCCAAG AGATTCCATC ACTTCTTGGG TCAAACTTAC 83084 .......... .......... .......... .......... .......... .......... 506 TACTGCGTTC CAAGTGCAAT TGTTTCCCCT CATCGAAGAT GATGATTCTT ATCCAAGCTT 83144 .......... .......... .......... .......... .......... .......... 506 TCAAATGCTT AGAAGGTGAG CCAATTCATG AGATATGATT GAGGTTTACG AAATTGGAAC 83204 .......... .......... .......... .......... .......... .......... 506 TGCAATGTCC AACTCATGGA ATGCCCAATA ATATGTTGTT GTAATACTTC TATAGTAGCG 83264 .......... .......... .......... .......... .......... .......... 506 TCGACTCGGT GAACAAAGGA ATTGCTGATC AACTTTTTCC TGGTGGTATA ATGCAAAATC 83324 .......... .......... .......... .......... .......... .......... 506 ATATGAAGTA GCATCTCAAC TCCTTAACTG CATGACCAAG ATAAAATAAG GCATGGTACA 83384 .......... .......... .......... .......... .......... .......... 506 CTCGCGAGGA CCAAGTCTAT CCTCTCAATT TTAGAATGAC AAAAGAACAT ATCGAAAAGG 83444 .......... .......... .......... .......... .......... .......... 506 ATCAGGAAAG AAACTAAAAC ATTGTAAAGA TGATGACCCA ACTGTATGTC TTGGCTAAAA 83504 .......... .......... .......... .......... .......... .......... 506 ATGTCATGGG TGTTGGTACA AAGAGTGTTA ATGATGTGGG TGTTGATGGA GCGATGAGGC 83564 .......... .......... .......... .......... .......... .......... 506 AAAATTTGAA GCACCGTCCG TAAAATGAGT AAGTGAATTT CCTAGCCAAT AAAGAAGGAG 83624 .......... .......... .......... .......... .......... .......... 506 TTTATCGTGA AAAGTACATA AGAACGGGTG GAAATGAGGG TTGGAATAGA GATAAAAGCT 83684 .......... .......... .......... .......... .......... .......... 506 TGAGAGACTG TGACAGATAT TGACGTGATC ATAACGCCAC TTAGAAGGAA CGAAAAGGGG 83744 .......... .......... .......... .......... .......... .......... 506 AGAAGGATAG GTATGTTCCC CCCTATGAGC GTCAAAAGTC CAAGGAATAT GAGGGTGACT 83804 .......... .......... .......... .......... .......... .......... 506 ATACAGAAAA CATGCTCTCA TGCATTCTCA ACAAAGTTGA AAGGACTGAC AAAGTGTTGA 83864 .......... .......... .......... .......... .......... .......... 506 AAGAAATGAA AGAGGATGTC TCGACTCTCA ATCAGACAGT GACCTCTCAC CAGTCTCTAT 83924 .......... .......... .......... .......... .......... .......... 506 TAATCAGCTA GAGACCCAAA TGGGTCAAAT TTTTTCACAT TTGAATTCAA GACAACAAGG 83984 .......... .......... .......... .......... .......... .......... 506 GGGATTGCCT AGTGATACAA TGGAAAACCT CAAAAATGAA GCTTTAATGG GTACTTTCTT 84044 .......... .......... .......... .......... .......... .......... 506 CATGTCACGA CGTTAACTAA GATGCTTTTT GAGAGGAAAC CCAAGTTTTA AGGCTTTAAG 84104 .......... .......... .......... .......... .......... .......... 506 TTTTTGATTT TGAATAAAAG GTGTTGATTG TGCAGGTTGA AAAGTGAATT GTATTTAAAA 84164 .......... .......... .......... .......... .......... .......... 506 ATAGGCAGTT TGATGAGCCA AAGTCCAGAT GGCGACTCAC TGAAGAGGTC GGCGAGCCTG 84224 .......... .......... .......... .......... .......... .......... 506 GCTTGGACCA ACGTTGGACC CACAAAACTT GAAGTGGAAG TCTATAAAAA TCAGCGGGCC 84284 .......... .......... .......... .......... .......... .......... 506 AATTGCTTAA TCAGCGACTC ACTGAAAAGG TTGGCAAACC CGATGTTGTT TTCCATTTGA 84344 .......... .......... .......... .......... .......... .......... 506 ACACCCAAAT TAAATGGAGG TCCTGTAAGG CTCGGTGAGG TAAAGTACCA CTCGACAAAT 84404 .......... .......... .......... .......... .......... .......... 506 CTTCGAGTGG TTCGGCATGG ACAACTTGCT TCGCCGATAT GGCTGCGAGC TGAAAGGTTT 84464 .......... .......... .......... .......... .......... .......... 506 TAAAAGGACA AATGGTTTAA ATTTCAAAAT CTTTCACATT CTCACATTTC TAACCCATGT 84524 .......... .......... .......... .......... .......... .......... 506 GCACTCTCAC CTGCACTTTA TATCTTCTGT ATTTTACTAT TTTATTCACT TTTTGTGTGT 84584 .......... .......... .......... .......... .......... .......... 506 GATCTCGTGC TCAAAATTGG AATACTTTAC CGCCTAGCTT TTTAAATTCT CAATTCAACA 84644 .......... .......... .......... .......... .......... .......... 506 TACAAGTTGG TTTTCCGAAC CCTATACTTT AGTTTAGTTG TTAAACTCAA ATGCAATAGG 84704 .......... .......... .......... .......... .......... .......... 506 TAAATGTGTG TTGATATGTG TTGGCTAATT GCTTCAATTG TGTTTTATGT GTCGGATTGC 84764 .......... .......... .......... .......... .......... .......... 506 CCGTATTATG TTTGAACTTG TGCCTAAATG CTTAAATAGA TGATTTCCCG TGTTTTGTGT 84824 .......... .......... .......... .......... .......... .......... 506 GTCAAAATTG GCTAAAAATA ATTGGGTTAC AATTATTATA TTGGGTCTAG CTAGGTGAAG 84884 .......... .......... .......... .......... .......... .......... 506 TCTGAGTAAC CCCGAATTGT GCCAAATGAT AGAGCGTTTG ACGTCATTCT TAAGGGAAAA 84944 .......... .......... .......... .......... .......... .......... 506 AGTTATCAAA TGGCCAATTT TGGCCAAATC GGGGGAAGTT TGAGTACCCC AAAGGCATGA 85004 .......... .......... .......... .......... .......... .......... 506 GTCGTATGGG CTTTGTACGT AATTAAAATT AGCATGTAGC ACATAGTGCC TTGTACTAAT 85064 .......... .......... .......... .......... .......... .......... 506 TGCAGTGTAG GGCTTCATTT GGGCCTTTGT TTATAAAGAT TTAGTGTCCT CAAATGCTTA 85124 .......... .......... .......... .......... .......... .......... 506 ATTTGTTTCC TAAACTGATG TTAAATCCTT AATTTTTTGG TATATAGATT GAGGAGCAAA 85184 .......... .......... .......... .......... .......... .......... 506 ACAAGGAGAC TAGAAGGAAA AAAGAAACAA AACAAACTGA AGAAGTGAAG AAAGGATAGC 85244 .......... .......... .......... .......... .......... .......... 506 CTAAGTATCA CCAAGAGCAC TTGAAAATTG GCAGTTGACG AATTGTTGAG TAGTTTCACG 85304 .......... .......... .......... .......... .......... .......... 506 ATGCAAAGAG AGATCGCACA AAGACATAGG ACTTGATGAT GTTGAAGGCC AAGACAAAAC 85364 .......... .......... .......... .......... .......... .......... 506 GGTGATATAA GAGATCATTG AGCAGTTTGT CGAGTGGTTC GATAAACCCG ACTTACTTTG 85424 .......... .......... .......... .......... .......... .......... 506 CCTAATGGCC CTTCGTGACT TATTTTTGAC AACTATAAAT TAGATTTAGA ATAATTATTT 85484 .......... .......... .......... .......... .......... .......... 506 TAATATGATG GGAAGTGTTG AGAAAGACTA AAAAAGGCTA AATCAACTTA GAACATTTTT 85544 .......... .......... .......... .......... .......... .......... 506 TCTCTTGAGT TTCTTGGTAG ACTTGAAGGT TTTTGGAGAT TCAATTTGGA GATTTTGCAT 85604 .......... .......... .......... .......... .......... .......... 506 GTATATTTCA AATTTTTAAT TGAAACATTG TGAATAGTAA ATTACTCTTA TCTAGTTGAT 85664 .......... .......... .......... .......... .......... .......... 506 GGTTAATCGA TTTGGTAACT GTTCGTACTC TTTTATGATG TTTGGTTTAA ACCCCAATTC 85724 .......... .......... .......... .......... .......... .......... 506 TTGGAGTGTG ATCATGTGAT TGTGGGTTGA ACTAGTTTAT GGGTATTGTT AATTACTAGT 85784 .......... .......... .......... .......... .......... .......... 506 TTAAATGCTA AATTTAAGTG AGTTTGATAA TTAATTGTGG TTCATTCTAT AAGTTGTAGT 85844 .......... .......... .......... .......... .......... .......... 506 TGAAAAATAA ATTTTAATTT TGTGTTCTTG GCTTGCTCGA GAGAAGTTTT AAAACTAAAA 85904 .......... .......... .......... .......... .......... .......... 506 ATTCTTGATT AATATTTTGT AGGTATTTGG TTGAGCAGGG TTCAACTCAA GAGAGTGAAT 85964 || || |||| | | .......... .......... .......... ........GG ATCTACTCCA G......... 519 CCTAAACCCA AGCCTTACCA TCTAGCACAA GAGAGTGGAT GAATTAAGTT TTAGGTTACT 86024 .......... .......... .......... .......... .......... .......... 519 CTTCATTGTT ATGCTTGTTC ATGTTAGAAA GAAATCACCT GATATAGTTG TTCAAGAGAA 86084 .......... .......... .......... .......... .......... .......... 519 AGCTATCTCA CATATAGTTT AGCCTACTCA ATGATTTTTA GCTGTTTGCT AGTAGTTTCA 86144 .......... .......... .......... .......... .......... .......... 519 ATTATCCATA TATCAAAATT TTCTTATGAT TGATCACATC CCGAGAATTC CTCACCTTAT 86204 .......... .......... .......... .......... .......... .......... 519 TGTTATTTCA AATTGTTTGT GAGTGTGTTG TAGTTGATAA TTCCAAACCA AAACCCCCTA 86264 .......... .......... .......... .......... .......... .......... 519 TCTGACATTC GTGTCACCCC TTTTAACTTG TTTCATGTCT TTTCTTGATA ATTTCTATTC 86324 .......... .......... .......... .......... .......... .......... 519 CTATAGCTGA TTTAAACACA TTTGTACTTT CAAATTGAAT TTGAACCCGT ACCCGCTCTC 86384 .......... .......... .......... .......... .......... .......... 519 TGTGGGATTC AACCCCAACT CTTTGTTGGG TTGTATACCG TCTAACGATC ATTATTGCAC 86444 .......... .......... .......... .......... .......... .......... 519 CTAGAATTAA ATGAGGTATG CTTGAAACGT TAATAAATAT TGTCTCTCTC AAGTTTAAAA 86504 .......... .......... .......... .......... .......... .......... 519 ATGACTTTTT AAACTAAGCA TTATGAAAAT GTTTATTAGC TGTATCCCTT GATTGTTGAA 86564 | || |||| | | ||| | | | .......... ........CG TTTAGAAATT GGTTAATCGG T......... .......... 542 ATATATATCA TTCAATTTTT CACTTCCTAT GCATAAAACA TCAAGAACAT GCCTAACATT 86624 .......... .......... .......... .......... .......... .......... 542 TCATATATAG ACATTCCATG CATGGATCCA TGTCAAAATT TCATCTAAGT CTTTAAAAAA 86684 .......... .......... .......... .......... .......... .......... 542 AAATCAACAA ACACTGCTTT TTTAATAAAA ACTTTTCATA ACAACAAATT TCATTTCCTT 86744 .......... .......... .......... .......... .......... .......... 542 ATAATATTTA TGGAATAAAT ATAATAAGTT ATTCTTTTAA TAATGATTCA GATAACAATT 86804 .......... .......... .......... .......... .......... .......... 542 TAGATTATTT TATCAAGTTA TGTAAACCCT ATATGAAGTC CATGTTAATC ACTTCCTACT 86864 .......... .......... .......... .......... .......... .......... 542 TCCAAGTAGG AATGTTGATC TCTTGAGTTA TGCCTCCTTG ATTATGATGT TCTACCTTCA 86924 .......... .......... .......... .......... .......... .......... 542 CTTGTTGGCA ATTAGGCATT TAGCCACAAA ATCAACTATA TTTCTTTTCA TACCATTTCA 86984 .......... .......... .......... .......... .......... .......... 542 CAAAAAGACT TTCCGCAGAT CACGATACAT CTTACCGGAA CCTGGATGAA TAAAATACCT 87044 .......... .......... .......... .......... .......... .......... 542 GGAGTTATGT ACTTCTGCAA GAATATGATG TCTTAACTCC CTCACCTTAG GAACACATAA 87104 .......... .......... .......... .......... .......... .......... 542 TCAACCCTAA TAGCGAAGCA CATCATATCC CCCGAGGTGA AAACCTTATT TCTCTTCTCA 87164 .......... .......... .......... .......... .......... .......... 542 TGGACTGCAC CCTTTAGTTG AGGCAGTATG AGATCACTGT CTTGCTTCTC CTTAACCTCC 87224 .......... .......... .......... .......... .......... .......... 542 ATTAACAATG AAGATTCTAC TCCATTCTGA ACTATTATAC CACCATCTGA TATGCTCATC 87284 | || ||| | | .......... .......... .......... .......... ...AAAGAGA CATGTACTTG 559 AGGCGACCTC CCAAGAGAG 87303 | || || | ||||||||| ATGC-CCCGC CCAAGAGAG 577 hqPGS_C01HBa0216G16.1+_SGN-U320874+ (81045 81118) ******************************************************************************** EST sequence 2 -strand 614 n (File: SGN-U324462-) 1 GCACGAGAAG AAAAGGTCAT ATATTGTTGG CTGTTGTGAA CAACAGCAGT TCGCAGAGGA 61 GAAAAAGAAT AGAAAAAAAG AAGAAGAAGA AAGGGTTTAG GCGAGAATGA CGACAACTAC 121 TTCAGATTGC TTGAGTTGGA AGTTCAACGA AAATTAAAGG CTCAAGTCAT GGAGTGAGTT 181 TTCGATAAAT TGAGGTTACT AGCCCGGACT TTTATGATAT ATTCTCTTCT TTTCCGAGGC 241 TTCCTGGAGA TTTTGTGAGA TTGCTTGAGT TGGAAGTTCA ACAAAAATTA AAGGCTCAAG 301 TCATGGAGTG AGTTTTCGAT AAATTGAGGT TACTAGCCCG GACTTTTATG ATATATTCTC 361 TTCTTTTTCC GAGGCTTCCT GGAGATTTTG TGAGGTAGTT GTTGGTCATC TCAGCATCCC 421 TCCTTACTCT TGTTTATGAT TTTGTTCTAC TCTAGAAACA ATATCATAAG AGACTTATAT 481 TTTCTTTTGA TCCGATTGTA ATACTTTAGA GGCTTGTACA CGTGACAACC AGGTTTTGGG 541 GTATAATGTA AGTTGATAGT AAATTTTCCG CATTTTTATT GTAATAGTTG AGTTTTAAAA 601 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 100110 to 94001): Exon 1 96313 96244 ( 70 n); cDNA 260 328 ( 69 n); score: 0.714 Intron 1 96243 95298 ( 946 n); Pd: 0.983 (s: 0.66), Pa: 0.866 (s: 0.63) Exon 2 95297 95033 ( 265 n); cDNA 329 597 ( 269 n); score: 0.804 PPA cDNA 598 614 MATCH C01HBa0216G16.1- SGN-U324462- 0.785 335 0.546 C PGS_C01HBa0216G16.1-_SGN-U324462- (96313 96244,95297 95033) Alignment (genomic DNA sequence = upper lines): ATTGCTTTGA GTTCAAAGTT CAATAAAATG GAAATGCTCA AATTTCGTAG TGAATTGTTC 96254 ||||| |||| ||| ||||| ||| |||| ||| ||||| | | | || ||| || | ATTGC-TTGA GTTGGAAGTT CAACAAAAAT TAAAGGCTCA AGTCATGGAG TGAGTTTTCG 318 ACTTATTGAG GCAAGTGGAT TTCTAAACTC TTGTTTAGTG TATGAAATGT GTGTATTTCC 96194 | |||||| ATAAATTGAG .......... .......... .......... .......... .......... 328 TTGTGGTATA TGTTTAGGAG TGATGGGACT TGGTGATGGG TTGACTTGTC CACATTGATT 96134 .......... .......... .......... .......... .......... .......... 328 AATTCTAATA ATAAAAAAAG GGTAATAAAA AGCAATGTGA TTAATTATTT GTGTGTGATG 96074 .......... .......... .......... .......... .......... .......... 328 TGGATAATGG AGAATGGTTT GAAAGACTTG TTAAATCATT GTTGATGTTG TTGTGAACTG 96014 .......... .......... .......... .......... .......... .......... 328 CGTAATGTTA TGAAAATGGT CATCTCTTCG TTATATTTGA AAACATGTCA TTTGCATTGT 95954 .......... .......... .......... .......... .......... .......... 328 TCTGAGATAT GGTTGTTACA AGTGTTATGT GCATTGAGAA AGAATGAGAA ACTAAAGAGG 95894 .......... .......... .......... .......... .......... .......... 328 ATGTACCATT TTGAGACATG TATCACGCGC TCCGAAGGAT ATTATATTTC GAGAGACGCG 95834 .......... .......... .......... .......... .......... .......... 328 CGCACCAGAA TGGTTACTTT TATTGAGGGT CGAATCGCGC ACGCGATAGA TGCATGGACA 95774 .......... .......... .......... .......... .......... .......... 328 GATATGTCCC CAATGGGTTC TGAACTGAGA AACAGCGGGT GTGTATCACT AGGTCAGACA 95714 .......... .......... .......... .......... .......... .......... 328 TGCACCATTA TACTTAACAT TGTGTTCCAT TACATTGCAC ATAGTTATCA TTAGTGAATT 95654 .......... .......... .......... .......... .......... .......... 328 TGATATGTGT TTTGCGGATC TTTTGAATGT CTTTCTTTGA GACTCGTGAT TGATGAATAC 95594 .......... .......... .......... .......... .......... .......... 328 TGAGGTTGTT GTTGAGGATA TGTAATTTGT TGAAGTAGTA TTGTTGAGGA CATGTAATTT 95534 .......... .......... .......... .......... .......... .......... 328 GTCAAAGTGG TGTTGTTGAG GATATGCAAT TTTGTCTAAG TGTTGTTGTT GAGTTATGTT 95474 .......... .......... .......... .......... .......... .......... 328 CTATGTAAAC TGCGAGCTGT TAAGTTGGAC TGATTTTTAT GCAGGTCGTA ATTGTAGAGG 95414 .......... .......... .......... .......... .......... .......... 328 TTCAGTTAGA GTGGTAGGAG TACCCTTATT TCATCCAATT TGCTTGTGTT TAGAGGTTTA 95354 .......... .......... .......... .......... .......... .......... 328 CTTATTAAGT ACCGTGTGGT TTGGTAGTCA CTACTTGCTT CTACAATTTT TTGTAGGTTA 95294 |||| .......... .......... .......... .......... .......... ......GTTA 332 CTAGCGCAGA C-CTT-TGTC ATA-TCTCTT C-TTTTCTAA GGCTTCTTGA AGA-TTTATG 95239 ||||| | || | || || ||| |||||| | ||||| | |||||| || ||| ||| || CTAGCCCGGA CTTTTATGAT ATATTCTCTT CTTTTTCCGA GGCTTCCTGG AGATTTTGTG 392 GGGTAGATGT TTGTCATCTC AACAAACCTT CTTACTTCTG TTTATGATTT TGTTCTACTC 95179 ||||| ||| | |||||||| | || ||| |||||| || |||||||||| |||||||||| AGGTAGTTGT TGGTCATCTC AGCATCCCTC CTTACTCTTG TTTATGATTT TGTTCTACTC 452 TAGAAACAAT GTCATATGAG ACTTACATTT TTCTTTTAAT TCACTTGTAA TACTTTAGAG 95119 |||||||||| ||||| ||| ||||| | || ||||||| || | |||||| |||||||||| TAGAAACAAT ATCATAAGAG ACTTATA-TT TTCTTTTGAT CCGATTGTAA TACTTTAGAG 511 TTTTGTACAC GTGACAACCA GGTTTTGGGG GTATAACTTA AGTTGATAGT AAATTTTCTA 95059 |||||||| |||||||||| |||||| ||| |||||| || |||||||||| |||||||| GCTTGTACAC GTGACAACCA GGTTTT-GGG GTATAATGTA AGTTGATAGT AAATTTTCCG 570 TA-TTTTATT ATAATAATTG AGTTTTA 95033 | ||||||| ||||| ||| ||||||| CATTTTTATT GTAATAGTTG AGTTTTA 597 hqPGS_C01HBa0216G16.1-_SGN-U324462- (96313 96244,95297 95033) ******************************************************************************** EST sequence 14 -strand 904 n (File: SGN-U337987-) 1 NACATATCGC GCGCGGCGAT GGATACTATA TTCGAGGGAC GTTCCGCGCG CTGCGATGGT 61 TACTATAATC GAGGGTCGTG TCGTGCGCCG CGACAGATGC ATGGACATAT ATGTCTCCCA 121 TGGGTCCCGG ACTGAGAGAC AGTGGGTGTG TATCACTAGG TCAGACATGC ATCATTATAC 181 TTGACATTGC ATTCCATTGC ATTGCACATA CTTACCATTA GTGAACTTGA TATCGTATTT 241 CGCTGATGTT TTGATTGCTT TTCTGCGGAA CTTGTGATTG ATCAATATTG AGCTTGTTAT 301 TGCGGATATG TAATTTGTTG AAGTATTGTT GTTGAGGATA TGTAATTTGT TGAAGTATTG 361 TTGTTGAGGA TATGTAATTT GTTGAAGTGT TGTTGTTGAG GATATGTAAT TTGCCTAAGT 421 GTTGTTGTTG AGCTATGTGC TATGTAAATT GTGAGCTGTT AGGTTGGGTT GATTTTAATG 481 CAGGTTGTAT TTGTGGAGGT TCGGTTGGGG GTGGTAGGAG TACCCGTATT TCATCCCCTT 541 AGCTTATGTT TAGAGGTTTA CTTGCTGAGT ACCGTGTGGT TTGGTACTCA CCCCTTGCTT 601 CTACAAATTT TTGTAGGTTA TGAGCCTGGA TTTTTGTTGT ACTTGTCAGT CTCTTCTTTT 661 CCGAGGCTTC ATGGAGATTT GTGAGGTAGC TGTTTCCATC TCAGCAGACT TTCTTCTCCA 721 TAATTATGAT CTTGTTCTAT TCTAGAAACA AGTTCATTTG AGACTTGAGT TTTTTTCTTT 781 TGAATCTTGT AATACTTTAG AGGCTTGTAC ACGTGACTAC CCAGGTCTTG GGGGTTTAAT 841 TAAGTTACTT ATATTTTATT TCTGCAAAAA AAAAAAAAAA AAACTCGAGG GGGGGCCCGG 901 TCCC Predicted gene structure (within gDNA segment 99768 to 90152): Exon 1 95873 95089 ( 785 n); cDNA 5 833 ( 829 n); score: 0.688 PPA cDNA 866 884 MATCH C01HBa0216G16.1- SGN-U337987- 0.688 785 0.868 C PGS_C01HBa0216G16.1-_SGN-U337987- (95873 95089) Alignment (genomic DNA sequence = upper lines): TATCACGCGC TCCGAAGGAT ATTATATTTC GAGAGACG-- -CGCGCACCA GAATGGTTAC 95817 |||| ||||| ||| |||| | ||||| || ||| |||| ||||| | |||||||| TATCGCGCGC GGCGATGGAT ACTATAT-TC GAGGGACGTT CCGCGCGCTG CGATGGTTAC 63 TTTTATTGAG GGTCGAATCG CGC-ACGCGA TAGATGCATG GACAGATATG TCCCCAATGG 95758 | | || ||| ||||| ||| || ||||| ||||||||| |||| ||||| || || |||| TATAATCGAG GGTCGTGTCG TGCGCCGCGA CAGATGCATG GACATATATG TCTCCCATGG 123 GTTCTGAACT GAGAAACAGC GGGTGTGTAT CACTAGGTCA GACATGCACC ATTATACTTA 95698 || | | ||| |||| |||| |||||||||| |||||||||| |||||||| | ||||||||| GTCCCGGACT GAGAGACAGT GGGTGTGTAT CACTAGGTCA GACATGCATC ATTATACTTG 183 ACATTGTGTT CCATTACATT GCACATAGTT ATCATTAGTG AATTTGATAT -GTGTTTTGC 95639 |||||| || ||||| |||| ||||||| || | |||||||| || ||||||| || ||| || ACATTGCATT CCATTGCATT GCACATACTT ACCATTAGTG AACTTGATAT CGTATTTCGC 243 GGATCTTTTG AATG-TCTT- T------CTT -TGA--GA-C --TCGTGA-- TTG--A-T-- 95600 ||| ||||| | || | || | ||| ||| || | | ||| ||| | | TGATGTTTTG ATTGCTTTTC TGCGGAACTT GTGATTGATC AATATTGAGC TTGTTATTGC 303 -GA-AT---A ----CTGAGG T-T-GTTGTT GAGGATATGT AATTTGTTGA AGTAGTATTG 95551 || || | ||| | | | |||||| |||||||||| |||||||||| |||| | ||| GGATATGTAA TTTGTTGAAG TATTGTTGTT GAGGATATGT AATTTGTTGA AGTATTGTTG 363 TTGAGGACAT GTAATTTGTC AAAGTGGTGT TGTTGAGGAT ATGCAATTTT GTCTAAGTGT 95491 ||||||| || ||||||||| ||||| ||| |||||||||| ||| || ||| | |||||||| TTGAGGATAT GTAATTTGTT GAAGTGTTGT TGTTGAGGAT ATGTAA-TTT GCCTAAGTGT 422 TGTTGTTGAG TTATGTTCTA TGTAAACTGC GAGCTGTTAA GTTGGACTGA TTTTTATGCA 95431 |||||||||| ||||| ||| |||||| || ||||||||| ||||| ||| |||| ||||| TGTTGTTGAG CTATGTGCTA TGTAAATTGT GAGCTGTTAG GTTGGGTTGA TTTTAATGCA 482 GGTCGTAATT GTAGAGGTTC AGTT-AGAGT GGTAGGAGTA CCCTTATTTC ATCCAATTTG 95372 ||| ||| || || ||||||| ||| | || |||||||||| ||| |||||| |||| || | GGTTGTATTT GTGGAGGTTC GGTTGGGGGT GGTAGGAGTA CCCGTATTTC ATCCCCTTAG 542 CTTGTGTTTA GAGGTTTACT TATTAAGTAC CGTGTGGTTT GGTAGTCACT ACTTGCTTCT 95312 ||| |||||| |||||||||| | | ||||| |||||||||| |||| |||| ||||||||| CTTATGTTTA GAGGTTTACT TGCTGAGTAC CGTGTGGTTT GGTACTCACC CCTTGCTTCT 602 ACAATTTTTT GTAGGTTACT AG-C-GCAGA CCT-TTGT-C --AT-A-TCT CTTCTTTTCT 95260 |||| ||||| |||||||| || | | | | |||| | | | ||| ||||||||| ACAAATTTTT GTAGGTTATG AGCCTGGATT TTTGTTGTAC TTGTCAGTCT CTTCTTTTCC 662 AAGGCTTCTT GAAGATTTAT GGGGTAGATG TTTGTCATCT CAACAAACCT TCTTACTTC- 95201 ||||||| | | |||||| | | ||||| || ||| ||||| || || || | |||| || | GAGGCTTCAT GGAGATTTGT GAGGTAGCTG TTT-CCATCT CAGCAGACTT TCTT-CTCCA 720 TGTTTATGAT TTTGTTCTAC TCTAGAAACA ATGTCATATG AGACTTACAT TTTTCTTTTA 95141 | ||||||| |||||||| |||||||||| | |||| || |||||| | |||| | || TAATTATGAT CTTGTTCTAT TCTAGAAACA AGTTCATTTG AGACTTGAGT TTTTTTCTTT 780 ATTCACTTGT AATACTTTAG AGTTTTGTAC ACGTGAC-AA CCAGGTTTTG GGG 95089 ||||| |||||||||| || |||||| ||||||| | |||||| ||| ||| TGAATCTTGT AATACTTTAG AGGCTTGTAC ACGTGACTAC CCAGGTCTTG GGG 833 hqPGS_C01HBa0216G16.1-_SGN-U337987- (95873 95089) ******************************************************************************** EST sequence 10 -strand 786 n (File: SGN-U345625-) 1 CGCCTCGACC CCAAAAAACT TGATAAGGGT GATGGTTCAC GTAGTGGGCC CTCGCCCTGA 61 TAGACGGTTT TTCGCCCTTT GACGTTGGAG TCCACGTTCT TTAATAGTGG ACTCTTGTTC 121 CAAACTGGAA CAACACTCAA CCCTATCTCG GTCTATTCTT TTGATTTATA AGGGATTTTG 181 CCGATTTCGG CCTATTGGTT AAAAAATGAG CTGATTTAAC AAAAATTTAA CGCGAATTTT 241 AACAAAATAT TAACGCTTAC AATTTGCCAT TCGCCATTCA GGCTGCGCAA CTGTTGGGAA 301 GGGCGATCGG TGCGGGCCTC TTCGCTATTA CGCCAGCTGG CGAAAGGGGG ATGTGCTGCA 361 AGGCGATTAA GTTGGGTAAC GCCAGGGTTT TCCCAGTCAC GACGTTGTAA AACGACGGCC 421 AGTGAATTGT AATACGACTC ACTATAGGGC GAATTGGGTA CCGGGCCCCC CCTCGAGTTT 481 TTTTTTTTTT AAAATCTTAG TATGATTACT TATTTAAATA GATTGCTTTG AGTTGAAAGT 541 TCAACGAAAA GGGAAGGATC GATCAAGTCC CAGTGTTATT GTTATACTAT TTGAGGCAAG 601 TGGACTTCTA AACTCTGGTG AAGTGTATTA AATATGTTTA TTTCCTTGTG GTATATGTTT 661 GGGAGTAACG GAATTGGTGA TGGGTTGACT TGTCCACATT GATAAATTCT AATGATGAAA 721 AAACCTGCAG CCCGGGGGAT CCACTAGTTC TAGAGCGGCC GCCACCGCGG TGGAGCTCCA 781 GCTTAT Predicted gene structure (within gDNA segment 103190 to 94705): Exon 1 101926 101918 ( 9 n); cDNA 454 462 ( 9 n); score: 0.889 Intron 1 101917 98532 (3386 n); Pd: 0.000 (s: 0), Pa: 0.924 (s: 0) Exon 2 98531 98514 ( 18 n); cDNA 463 480 ( 18 n); score: 0.611 Intron 2 98513 96355 (2159 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 3 96354 96115 ( 240 n); cDNA 481 723 ( 243 n); score: 0.796 MATCH C01HBa0216G16.1- SGN-U345625- 0.796 267 0.340 C PGS_C01HBa0216G16.1-_SGN-U345625- (101926 101918,98531 98514,96354 96115) Alignment (genomic DNA sequence = upper lines): TTGGGTATCT CTGAAATAGG CAGAGTGCTA GCTAGCATTG AAGCTAAGGC TACATTCATT 101867 ||||||| | TTGGGTACC. .......... .......... .......... .......... .......... 462 GAGGAGATAA AGGTCAAACA ATTTGAGGAT GAAGATTTGA ACGAACTCAA AAGAAAAGAT 101807 .......... .......... .......... .......... .......... .......... 462 GACTAATGGT AAGGCACAAC AGACCATTCT TGATATGGAT GTTGTACTTA TGGTGAAAGG 101747 .......... .......... .......... .......... .......... .......... 462 AAGGATTTGT GTTCCTCGAG TTGATGGCTT GATTCAAAAA TTATTGGTAG AGTCTCATGG 101687 .......... .......... .......... .......... .......... .......... 462 TTCACAATTT TCTATCTATC CAAGTGTGAC CAATATGTAT AGAGATCTGA AGCAAATTTA 101627 .......... .......... .......... .......... .......... .......... 462 TTAGTGGTCG GGTATGAAGA AAGACATTCT ATAGTTCGTG GTGAAGTGTC AAATTTTCCA 101567 .......... .......... .......... .......... .......... .......... 462 ACAAGTTAAG TATGAACATA AAAGTCATGT GGGTTTACTT CTAAGAATGT CAATTCCGGA 101507 .......... .......... .......... .......... .......... .......... 462 ATGGAAGTGA GAAAAATAGC CATGGATTTT GTGGTTGGTC TTTCCTTAAC CTTGTGGAAG 101447 .......... .......... .......... .......... .......... .......... 462 TTAGATTCTA TTTGGGTTGT TGTTGTTAGA TTGACTAAAT CAGTCCACTT TATTCCGATA 101387 .......... .......... .......... .......... .......... .......... 462 AGAATAGATT ATAATGTTGA ACAATTGGTT AAGATTTATG TGAAAGAGAT ATTGAGGCTG 101327 .......... .......... .......... .......... .......... .......... 462 TATGATGTGC CCCTTTCCAC CATCTTAGAT CGAGGTAGCT TTTTCACTTC CAAGTTTTGG 101267 .......... .......... .......... .......... .......... .......... 462 AAAAATTTGC ATGACGAATT GGGCATACAA CTCACTTTTA GTATAGCCTT CCAGCAACAG 101207 .......... .......... .......... .......... .......... .......... 462 AAGGATGGAC AATTCGAGAG GACTGTCAAG TGTTGGAAGA CATATTGAGG GAATGTGTGA 101147 .......... .......... .......... .......... .......... .......... 462 TTGATTTTGG AGGACATTGG GATAAGTTCT TACCTTTGTC AAAATTCTCT TATAATAATA 101087 .......... .......... .......... .......... .......... .......... 462 GATATCACCC CAGCATTGAT ATGACACTGT TTGAGGTGTT ATATGGGAGG GGATGTAGAT 101027 .......... .......... .......... .......... .......... .......... 462 CACCCATTGG TTGACTTAAG GCTGGAGATG TGAAACCTCT GGGGTTGAAT TAGTGAAGGA 100967 .......... .......... .......... .......... .......... .......... 462 TATTCAAGAT AAGGTGAGGA GTGTTCAAGC TAATCTTTCA GCCACTCAGT GTAGACATAT 100907 .......... .......... .......... .......... .......... .......... 462 GAAGTATGCA GATTATAAGG TGAGAGGCGT GGAGTACCAA ACGAGCGAAA AATGTTCTTC 100847 .......... .......... .......... .......... .......... .......... 462 TTAAGGTATC ACCTATAAAT GGGGTGATAA ATTCGGTAAG TAGGTCAAGA CAAGTCCTAG 100787 .......... .......... .......... .......... .......... .......... 462 GTACATTGGT CCCATTGAGG TCATTGAATT TGTAGGGCCG GTAGAGTATA GATTGGCTCC 100727 .......... .......... .......... .......... .......... .......... 462 ACCCCTAATC AATTTGGTGT TAATCTGTTA TTTCATATGT CCATATTGAA GAGGTACCAT 100667 .......... .......... .......... .......... .......... .......... 462 TGTGATGACT ATTATATTAT TAAGTAAACT CAATTGTTTT AGATAAAGAC CTCGAATATG 100607 .......... .......... .......... .......... .......... .......... 462 TAGAGGAATC GATTGCTATT CTTGATCATG ATGTGCGTAA GTGGAGGACC AAGGAGATTA 100547 .......... .......... .......... .......... .......... .......... 462 TGTCCGTGAA AATTCAATGG AAGCATCTTC CATTGTAAGA GGCTACTTGG GAAACTGAGA 100487 .......... .......... .......... .......... .......... .......... 462 CGGATATGCA AGACAAGTAT CCCCAATTGT TTGTCGAATC AGGCACTACT TTGTTCTTTC 100427 .......... .......... .......... .......... .......... .......... 462 CTTAGTATGC TTGCCTTAGT TGTGTCACTC GGGGATGAGT GATGGGTGAA TTAATATATA 100367 .......... .......... .......... .......... .......... .......... 462 TTGTAACGCC CGGGTTCCGT CGTTATAGAA ATGTCAACGA GAGAAAAATT GGGGTCGGAA 100307 .......... .......... .......... .......... .......... .......... 462 AAACTTTTTG TAGTATTTGA ATTTTTCCCA ACCTTGTGCA GATTTGGAGG AAATTTGAGT 100247 .......... .......... .......... .......... .......... .......... 462 ACTTGTGGCA TGGGAAAATA TGGTAGCAAT TTAGTGATTT AACTATGATT TTGATTTCAT 100187 .......... .......... .......... .......... .......... .......... 462 GAGGTGTTAG ATAATTCGTT AACGAATTCC TACGATTTTA AGGAATTGAA TTTTCATGAG 100127 .......... .......... .......... .......... .......... .......... 462 CAGATCTCCC GTAATTGGTT TTAGTGCGAA AGATATTTTC TGAGAATAAC AAGTTAGAGG 100067 .......... .......... .......... .......... .......... .......... 462 TGTGTTGTGA AAACGGGGAA TTGATTTTCT TCTGAGAGCG TTCTGTTAAG AATTGTGCCG 100007 .......... .......... .......... .......... .......... .......... 462 TAAGAGGGGG ATTATTGTTG ATTTAGCAAG GACTCTATAG CAGGATAGTG ACCGATGTGG 99947 .......... .......... .......... .......... .......... .......... 462 TGGACGTGAC GGGAGTTAAA ATCGTAAGAT CGAGAGGGGA GGGTTCTATT ACGAAAAGGT 99887 .......... .......... .......... .......... .......... .......... 462 TTGGCCGTTG TAACACCTCC GCTACAGCGG GATGAATGTT GTTGTACTGA GATAGGCACG 99827 .......... .......... .......... .......... .......... .......... 462 AATTAAGTCG TTACTAAAAC CCTTAAACGA ATTTATTTGG TATTTTTCAA CTTTAAGAGC 99767 .......... .......... .......... .......... .......... .......... 462 TAAAGAACGA CCTCAGGCGA TTCTAACTCG TTTTCCACCA TTCTTGAAGC TAAAGATAAG 99707 .......... .......... .......... .......... .......... .......... 462 TTTTCATTTC CCGAATTCAT ATTTTGATCT GTAGAATGTA ATAGAATGGG TCAATATTGA 99647 .......... .......... .......... .......... .......... .......... 462 TAACAAAGGG TTTTTATTTT ATATATTCTA TGGTGGAAAC AACTAAAATT GGTTAGTTGG 99587 .......... .......... .......... .......... .......... .......... 462 GATCATGGGT TTGATTTAGG ATTTGAAGAA TTGTTAATAA TCTGGACAAT TAGTAATGGT 99527 .......... .......... .......... .......... .......... .......... 462 TTATTGAGTT CCGTGTTATT GTGATTGTTG TAGTCCTAGA ACAAGAAGAA CGAATGCAGA 99467 .......... .......... .......... .......... .......... .......... 462 AAAAAATAAT CAAGTCTTTT AGGGTTTCAA ACTTGTTTCA AGGTAGGTGA TGGTTGTGAT 99407 .......... .......... .......... .......... .......... .......... 462 TTTATAATTG TGTGATGTTT GTTTGTTCTT GTTTCATTAT GATACTCGTA TATGTACGAA 99347 .......... .......... .......... .......... .......... .......... 462 TTTTTAAATA TCGATCACAC TTGTTGTAAA TGAAATAGTT GAATGATGGT TGCCATGAAA 99287 .......... .......... .......... .......... .......... .......... 462 TCATGTTGTA AATGTATGAT CTTGATGATA TACTTGTGAT TGTGGTATCT ATTTGCGGAT 99227 .......... .......... .......... .......... .......... .......... 462 CAGATTGTCA CATTTAGGCA GACTAATTTG GATCGAGTTT CCATATTCCG ACACTACTAT 99167 .......... .......... .......... .......... .......... .......... 462 TGAATGAGTT GCCACATTCC GACACAACTA TGGGATCAGA TTGCCACGTT CTGGAAAGCT 99107 .......... .......... .......... .......... .......... .......... 462 AATTGTCAAT GATGTTTGAT TATTTTATGT TGATGAACAT GTTGATAATA ATGTAGTTGT 99047 .......... .......... .......... .......... .......... .......... 462 TGATATATCA TGCATGTTAT CATAATGTTG TTTGGCCTAT TAATGATACA ATAGTGGGAT 98987 .......... .......... .......... .......... .......... .......... 462 AGCCGTGTGA CCCTACGAGT ACACTGTGGT TGTGTACGGA TTCTGCACTT GCATTTATTT 98927 .......... .......... .......... .......... .......... .......... 462 TTGTTGAGTA CATGGCTTCT TTATGCGTCT ATTGGAAGAC CTCGCTTAAG AGTTTAGAGG 98867 .......... .......... .......... .......... .......... .......... 462 TTATCGCTTT GACTTCAAGG GTGAGCCAAA TCTTCCGGGC TGCTATGGAG TTCTCTTTCG 98807 .......... .......... .......... .......... .......... .......... 462 TCTAAGTCCA CCATTTTTGG ACATAGATAT TTGTTTTAGT GAATGATTAG TTCATTATTT 98747 .......... .......... .......... .......... .......... .......... 462 AGGGTTCTAA CCCTTTATGT TTTAGGCTTG TTATTTGGAA GTAGTTTTTG TACGTTTACT 98687 .......... .......... .......... .......... .......... .......... 462 TTCAGGTTCT AGGTTGTTTA CTTCTGCATT TATATAGTTA GTTTTTTAGA ATCCTTGTTA 98627 .......... .......... .......... .......... .......... .......... 462 AAGTTTACAG AAACCTCTTA CTTAGGTTTT TTTACTTGCT TCTATAGCTA AATGTCATAG 98567 .......... .......... .......... .......... .......... .......... 462 TTTTTAGATT ATTTACTTTA TTTGGATGGT AGTAGTGGTT CACCCACCAG TTAGTTAGTA 98507 || | ||| | || || .......... .......... .......... .....GGGCC CCCCCTCGAG TTT....... 480 TGGGATCAAA AATCACGATG GTCTAGGTCG TGACACAACA GAACCCTTGG CCTGGCTCAA 98447 .......... .......... .......... .......... .......... .......... 480 CTATCAGTGA AAGACTTACT TAACATAGAA TAAAATCAAA AGATAAACTT TAACTTAAAT 98387 .......... .......... .......... .......... .......... .......... 480 ATCTCAAAAT TTTAAGCTCA TAAATGTTTA GAGAAACATT CAACTAGCCT CAAGAAAAAC 98327 .......... .......... .......... .......... .......... .......... 480 TCAAGTCTAG AACACAACAA TTGAAATGAA CAAAACTCAT AAACTACTAT TGTCTATCTA 98267 .......... .......... .......... .......... .......... .......... 480 TGTATGAATC CTCTAGTACT ACGAGGGATG TCGGGACAAG ACCTCCAATC ATCCTAAAAA 98207 .......... .......... .......... .......... .......... .......... 480 ATTGAAATAA TATGAAATAA ATAAATGAGG GATTCTAACG GAAGGAAGAA GACTCGCCAA 98147 .......... .......... .......... .......... .......... .......... 480 ACAACTCTAA AACTCAGTTG GATCAAGTGT TGGTTGATGA TCCTGGTTAC CTGTGTCTAC 98087 .......... .......... .......... .......... .......... .......... 480 ATCATGAAAT ATGCAAGAAA AATGGAGACA ATATATGTAT TGTACGTGCA TGCAAGGGGA 98027 .......... .......... .......... .......... .......... .......... 480 AAACTAAAGC ATGACATAAG CTTGAACTGA AATAAAAGAA ACACTTACCT CGTCTAAACT 97967 .......... .......... .......... .......... .......... .......... 480 CAACTCAACC TCAACTAGCC TCAACTCATT TCAATATAAA GCAGTGATAA AGATGTAATA 97907 .......... .......... .......... .......... .......... .......... 480 TAAAGGAAGA TTTTAAATAG TAGATAAATA CTCCGTGTAT TGAAAAATAA AAGTAACTCA 97847 .......... .......... .......... .......... .......... .......... 480 TTTTGTATGT AATAATTTAA AATAAAGTAT GTTTGGGAGA TTATCTAACC ACAACCATCA 97787 .......... .......... .......... .......... .......... .......... 480 CAATGAATTA TTTGATGATA CAACGTCTCA CCCACGCTGC CCGAACAGTC CTATACCTTG 97727 .......... .......... .......... .......... .......... .......... 480 TCGGGATATA TAACTCTTCA ACTAACTATA TCCACTAGTT TATGCTTAAA AGCAATAATG 97667 .......... .......... .......... .......... .......... .......... 480 AATCATCTAA AAGCATGATC CTTTCTATCC ACATTGGCTA CATGATTTAT GGGGGTTGTG 97607 .......... .......... .......... .......... .......... .......... 480 AGTTGTTTGA GCTCTTCGCC ATATCGGTGC TCAATACTAT TCTTAATATC ACTTAGCTTA 97547 .......... .......... .......... .......... .......... .......... 480 TATGTTTTAA AGAAAAAATT TCTTCATCCT CAACTTTAAG AATATTACTC AAAAGATTTA 97487 .......... .......... .......... .......... .......... .......... 480 ACCTAAAAAG AGATAGTGCT CAAACTCCTC ATAACTCATT TGGAAATCTC AGTTTCCTTC 97427 .......... .......... .......... .......... .......... .......... 480 TCTTTTTTAA ATGTAAAAAT TTTTGCTCTT GGGAATAATT AGTTCCAATA TATCATTTTA 97367 .......... .......... .......... .......... .......... .......... 480 AAGAAAATAT ACGCTTCTTC AAATTCAAAT TCTCAAGTCT TAAAATATAT TAAAGAAGGT 97307 .......... .......... .......... .......... .......... .......... 480 TTTCAAAAGA CTTCTCAAAA GACTTAAAAT AACTCTCAAG ACTTGATTCT TAACTCTACC 97247 .......... .......... .......... .......... .......... .......... 480 TTGAATTTAG ATTATGAATT CAAAATAATG ATTCACGTTA TGAATGATTT CTAGATTCGT 97187 .......... .......... .......... .......... .......... .......... 480 AGAATAGTTC AGAGTAGTTA AAGTCAAAAG AGAGTAATTA TACCCTTTGA AAGAACTCAG 97127 .......... .......... .......... .......... .......... .......... 480 ACGGGCTAAA TGACGGAGAA GGGGTGGGGG CAGGCGACCT GAGTGGTGCA CGACACCTGC 97067 .......... .......... .......... .......... .......... .......... 480 CCCTGAACTA CATGACACCT CTGATGGAGA ATTAGTGTGG CAGGGCTCCA GCCCTTGCCC 97007 .......... .......... .......... .......... .......... .......... 480 GGATTTTCCC GATTAATTTC TTTCTCATTT TCTTACCCTA ATTCGCCTCA AATCAAATGG 96947 .......... .......... .......... .......... .......... .......... 480 TTTCTTACTC CACTCATTTA GATTTGAATA TCCAACATAA ATACACAATA AATCTACTCA 96887 .......... .......... .......... .......... .......... .......... 480 AAACAACCCT CAAATCACTA ATTTTCATCT CAAGAATTCA TAAAATTCCC AACAATCAAA 96827 .......... .......... .......... .......... .......... .......... 480 ATACGAAGCA TTTTCAAGAA AACTTATCAA GAACACAAAT CCTTCAACTT CAAGAACGAA 96767 .......... .......... .......... .......... .......... .......... 480 ATTTGCATTG AAATAGTTTA TGTGTCAATT AAATAATATA ATATAGTTTT AGTGGCATAT 96707 .......... .......... .......... .......... .......... .......... 480 TGTAATATAT GATTTAATTA CCCATTAGCA TGTGGCGTGG ATAAGTAGTA ACGAAAAATT 96647 .......... .......... .......... .......... .......... .......... 480 CCCATCAAAT GGCTTTCGAT CACAACCTGG GTTTGACTCT TTTCGTTATT ATTTTTATTA 96587 .......... .......... .......... .......... .......... .......... 480 TAACATGATA ATTATAAGTT TTGATATAAT GAGATTGGTA ATCAAATATT AATTGTATTA 96527 .......... .......... .......... .......... .......... .......... 480 CATTATATGA AAATTATTAG GATGATATTA CTTGGAGAAA TTGAAACTTA ACCCTAGGAT 96467 .......... .......... .......... .......... .......... .......... 480 TGAAACATGG AAAATATGAT AATTGAAATG TTAATTGGCA TCAGAATTAG GAGTTTGAAT 96407 .......... .......... .......... .......... .......... .......... 480 ATAAATTCGG ATAAGTTTTG GGTGTAAGCT AGACCTATGG TAATATGGGG TGTTGTTTTT 96347 || ||||| .......... .......... .......... .......... .......... ..TTTTTTTT 488 TAAAAATCTT ATTGTGATTA TTAATGTGAA TAGATTGCTT TGAGTTCAAA GTTCAATAAA 96287 | |||||||| | | |||||| | || | || |||||||||| |||||| ||| |||||| || TTAAAATCTT AGTATGATTA CTTATTTAAA TAGATTGCTT TGAGTTGAAA GTTCAACGAA 548 ATGGAAATGC TC-A-AATTT CGTAGTG-AA TTGTT-CACT TATTGAGGCA AGTGGATTTC 96231 | || || | || | | | | |||| | ||||| ||| |||||||| |||||| ||| AAGGGAAGGA TCGATCAAGT CCCAGTGTTA TTGTTATACT ATTTGAGGCA AGTGGACTTC 608 TAAACTCTTG TTTAGTGTAT GAAATGTGTG TATTTCCTTG TGGTATATGT TTAGGAGTGA 96171 |||||||| | | ||||||| |||| ||| |||||||||| |||||||||| || ||||| | TAAACTCTGG TGAAGTGTAT TAAATATGTT TATTTCCTTG TGGTATATGT TTGGGAGT-A 667 TGGGACTTGG TGATGGGTTG ACTTGTCCAC ATTGATTAAT TCTAATAATA AAAAAA 96115 ||| |||| |||||||||| |||||||||| |||||| ||| |||||| || |||||| ACGGAATTGG TGATGGGTTG ACTTGTCCAC ATTGATAAAT TCTAATGATG AAAAAA 723 hqPGS_C01HBa0216G16.1-_SGN-U345625- (96354 96115) ******************************************************************************** EST sequence 42 +strand 716 n (File: SGN-U331132+) 1 GTTTGAAGGT TGGGCGTAAG CTGCTAAAAA GAAGGGTCGG TTCAGGTAAG GATTTTGATG 61 TTTTTAACAA AAGAAAATTA GCATTTTAAA ATTTAATGCA CTTGATGTTT CTAAAATCTT 121 TGGCATACAG ACTTTATGGC CTGTGCCACT AATTGATTTA CACGAAATAT GTACGAAAAT 181 CGATTATAGC AACTAAATTA TTGATGCGTT AATTAAATCA ATTTTATATT TATATGTTAA 241 AATAAGGATT AGGTTCTGGG TTACTGCTAG TTGAATTCAT GTTGGGCTGG AATTATTCTT 301 ATAGATATTC TATCATAATT TAAGTTTTGG TATATTGATA TAGGTAATTA AATATTAGGT 361 ATAGTATATT ATAATAATAT CATTAGAATT ATGTTATTCG GAGAATTAAG ATTTAACCCT 421 AAACTTGAAA TTCAAAAAAT ATGAGGTTTG ATCAATTGGT TTGAATAAAG ATTTAGAAAT 481 TTTATTATAA ATTTGGATGA GTTTTGGGTC TAAGCTAGAG ATATAGCAAT ATGAATGTTG 541 TTAGTTTCGA AATGATATCG TGGATATTAA GTTTGAATAG ATTTTATTGG TTTGGAAGTC 601 AACCAAAAGA CGAAGGCTCA AGTTCTGGAG TCATTGTTCG ACTATTTGAG GCAAGTGGAT 661 TTCTAAACTC TTGTTAAGTG TATGAAATGC GTGTATTTCC TTGTGGTATA TGTTTG Predicted gene structure (within gDNA segment 103298 to 95559): Exon 1 101780 101701 ( 80 n); cDNA 209 284 ( 76 n); score: 0.606 Intron 1 101700 100752 ( 949 n); Pd: 0.080 (s: 0.64), Pa: 0.101 (s: 0) Exon 2 100751 100747 ( 5 n); cDNA 285 289 ( 5 n); score: 0.800 Intron 2 100746 96605 (4142 n); Pd: 0.887 (s: 0), Pa: 0.000 (s: 0.70) Exon 3 96604 96179 ( 426 n); cDNA 290 715 ( 426 n); score: 0.728 MATCH C01HBa0216G16.1- SGN-U331132+ 0.708 511 0.714 C PGS_C01HBa0216G16.1-_SGN-U331132+ (101780 101701,100751 100747,96604 96179) Alignment (genomic DNA sequence = upper lines): TTCTTGATAT GGATGTTGTA CTTAT-GGTG AAAGGAAGGA TTTGTGTTCC TCGAGTTGAT 101722 || | | || || || || |||| || ||| ||||| || | ||| | | | ||| | TTAATTAAAT CAATTTTATA TTTATATGTT AAAATAAGGA TTAG-GTT-C TGG-GTT-AC 264 GGCTTGATTC AAAAATTATT GGTAGAGTCT CATGGTTCAC AATTTTCTAT CTATCCAAGT 101662 ||| | || || | || | TGCTAG-TTG AATTCATGTT G......... .......... .......... .......... 284 GTGACCAATA TGTATAGAGA TCTGAAGCAA ATTTATTAGT GGTCGGGTAT GAAGAAAGAC 101602 .......... .......... .......... .......... .......... .......... 284 ATTCTATAGT TCGTGGTGAA GTGTCAAATT TTCCAACAAG TTAAGTATGA ACATAAAAGT 101542 .......... .......... .......... .......... .......... .......... 284 CATGTGGGTT TACTTCTAAG AATGTCAATT CCGGAATGGA AGTGAGAAAA ATAGCCATGG 101482 .......... .......... .......... .......... .......... .......... 284 ATTTTGTGGT TGGTCTTTCC TTAACCTTGT GGAAGTTAGA TTCTATTTGG GTTGTTGTTG 101422 .......... .......... .......... .......... .......... .......... 284 TTAGATTGAC TAAATCAGTC CACTTTATTC CGATAAGAAT AGATTATAAT GTTGAACAAT 101362 .......... .......... .......... .......... .......... .......... 284 TGGTTAAGAT TTATGTGAAA GAGATATTGA GGCTGTATGA TGTGCCCCTT TCCACCATCT 101302 .......... .......... .......... .......... .......... .......... 284 TAGATCGAGG TAGCTTTTTC ACTTCCAAGT TTTGGAAAAA TTTGCATGAC GAATTGGGCA 101242 .......... .......... .......... .......... .......... .......... 284 TACAACTCAC TTTTAGTATA GCCTTCCAGC AACAGAAGGA TGGACAATTC GAGAGGACTG 101182 .......... .......... .......... .......... .......... .......... 284 TCAAGTGTTG GAAGACATAT TGAGGGAATG TGTGATTGAT TTTGGAGGAC ATTGGGATAA 101122 .......... .......... .......... .......... .......... .......... 284 GTTCTTACCT TTGTCAAAAT TCTCTTATAA TAATAGATAT CACCCCAGCA TTGATATGAC 101062 .......... .......... .......... .......... .......... .......... 284 ACTGTTTGAG GTGTTATATG GGAGGGGATG TAGATCACCC ATTGGTTGAC TTAAGGCTGG 101002 .......... .......... .......... .......... .......... .......... 284 AGATGTGAAA CCTCTGGGGT TGAATTAGTG AAGGATATTC AAGATAAGGT GAGGAGTGTT 100942 .......... .......... .......... .......... .......... .......... 284 CAAGCTAATC TTTCAGCCAC TCAGTGTAGA CATATGAAGT ATGCAGATTA TAAGGTGAGA 100882 .......... .......... .......... .......... .......... .......... 284 GGCGTGGAGT ACCAAACGAG CGAAAAATGT TCTTCTTAAG GTATCACCTA TAAATGGGGT 100822 .......... .......... .......... .......... .......... .......... 284 GATAAATTCG GTAAGTAGGT CAAGACAAGT CCTAGGTACA TTGGTCCCAT TGAGGTCATT 100762 .......... .......... .......... .......... .......... .......... 284 GAATTTGTAG GGCCGGTAGA GTATAGATTG GCTCCACCCC TAATCAATTT GGTGTTAATC 100702 ||| | .......... GGCTG..... .......... .......... .......... .......... 289 TGTTATTTCA TATGTCCATA TTGAAGAGGT ACCATTGTGA TGACTATTAT ATTATTAAGT 100642 .......... .......... .......... .......... .......... .......... 289 AAACTCAATT GTTTTAGATA AAGACCTCGA ATATGTAGAG GAATCGATTG CTATTCTTGA 100582 .......... .......... .......... .......... .......... .......... 289 TCATGATGTG CGTAAGTGGA GGACCAAGGA GATTATGTCC GTGAAAATTC AATGGAAGCA 100522 .......... .......... .......... .......... .......... .......... 289 TCTTCCATTG TAAGAGGCTA CTTGGGAAAC TGAGACGGAT ATGCAAGACA AGTATCCCCA 100462 .......... .......... .......... .......... .......... .......... 289 ATTGTTTGTC GAATCAGGCA CTACTTTGTT CTTTCCTTAG TATGCTTGCC TTAGTTGTGT 100402 .......... .......... .......... .......... .......... .......... 289 CACTCGGGGA TGAGTGATGG GTGAATTAAT ATATATTGTA ACGCCCGGGT TCCGTCGTTA 100342 .......... .......... .......... .......... .......... .......... 289 TAGAAATGTC AACGAGAGAA AAATTGGGGT CGGAAAAACT TTTTGTAGTA TTTGAATTTT 100282 .......... .......... .......... .......... .......... .......... 289 TCCCAACCTT GTGCAGATTT GGAGGAAATT TGAGTACTTG TGGCATGGGA AAATATGGTA 100222 .......... .......... .......... .......... .......... .......... 289 GCAATTTAGT GATTTAACTA TGATTTTGAT TTCATGAGGT GTTAGATAAT TCGTTAACGA 100162 .......... .......... .......... .......... .......... .......... 289 ATTCCTACGA TTTTAAGGAA TTGAATTTTC ATGAGCAGAT CTCCCGTAAT TGGTTTTAGT 100102 .......... .......... .......... .......... .......... .......... 289 GCGAAAGATA TTTTCTGAGA ATAACAAGTT AGAGGTGTGT TGTGAAAACG GGGAATTGAT 100042 .......... .......... .......... .......... .......... .......... 289 TTTCTTCTGA GAGCGTTCTG TTAAGAATTG TGCCGTAAGA GGGGGATTAT TGTTGATTTA 99982 .......... .......... .......... .......... .......... .......... 289 GCAAGGACTC TATAGCAGGA TAGTGACCGA TGTGGTGGAC GTGACGGGAG TTAAAATCGT 99922 .......... .......... .......... .......... .......... .......... 289 AAGATCGAGA GGGGAGGGTT CTATTACGAA AAGGTTTGGC CGTTGTAACA CCTCCGCTAC 99862 .......... .......... .......... .......... .......... .......... 289 AGCGGGATGA ATGTTGTTGT ACTGAGATAG GCACGAATTA AGTCGTTACT AAAACCCTTA 99802 .......... .......... .......... .......... .......... .......... 289 AACGAATTTA TTTGGTATTT TTCAACTTTA AGAGCTAAAG AACGACCTCA GGCGATTCTA 99742 .......... .......... .......... .......... .......... .......... 289 ACTCGTTTTC CACCATTCTT GAAGCTAAAG ATAAGTTTTC ATTTCCCGAA TTCATATTTT 99682 .......... .......... .......... .......... .......... .......... 289 GATCTGTAGA ATGTAATAGA ATGGGTCAAT ATTGATAACA AAGGGTTTTT ATTTTATATA 99622 .......... .......... .......... .......... .......... .......... 289 TTCTATGGTG GAAACAACTA AAATTGGTTA GTTGGGATCA TGGGTTTGAT TTAGGATTTG 99562 .......... .......... .......... .......... .......... .......... 289 AAGAATTGTT AATAATCTGG ACAATTAGTA ATGGTTTATT GAGTTCCGTG TTATTGTGAT 99502 .......... .......... .......... .......... .......... .......... 289 TGTTGTAGTC CTAGAACAAG AAGAACGAAT GCAGAAAAAA ATAATCAAGT CTTTTAGGGT 99442 .......... .......... .......... .......... .......... .......... 289 TTCAAACTTG TTTCAAGGTA GGTGATGGTT GTGATTTTAT AATTGTGTGA TGTTTGTTTG 99382 .......... .......... .......... .......... .......... .......... 289 TTCTTGTTTC ATTATGATAC TCGTATATGT ACGAATTTTT AAATATCGAT CACACTTGTT 99322 .......... .......... .......... .......... .......... .......... 289 GTAAATGAAA TAGTTGAATG ATGGTTGCCA TGAAATCATG TTGTAAATGT ATGATCTTGA 99262 .......... .......... .......... .......... .......... .......... 289 TGATATACTT GTGATTGTGG TATCTATTTG CGGATCAGAT TGTCACATTT AGGCAGACTA 99202 .......... .......... .......... .......... .......... .......... 289 ATTTGGATCG AGTTTCCATA TTCCGACACT ACTATTGAAT GAGTTGCCAC ATTCCGACAC 99142 .......... .......... .......... .......... .......... .......... 289 AACTATGGGA TCAGATTGCC ACGTTCTGGA AAGCTAATTG TCAATGATGT TTGATTATTT 99082 .......... .......... .......... .......... .......... .......... 289 TATGTTGATG AACATGTTGA TAATAATGTA GTTGTTGATA TATCATGCAT GTTATCATAA 99022 .......... .......... .......... .......... .......... .......... 289 TGTTGTTTGG CCTATTAATG ATACAATAGT GGGATAGCCG TGTGACCCTA CGAGTACACT 98962 .......... .......... .......... .......... .......... .......... 289 GTGGTTGTGT ACGGATTCTG CACTTGCATT TATTTTTGTT GAGTACATGG CTTCTTTATG 98902 .......... .......... .......... .......... .......... .......... 289 CGTCTATTGG AAGACCTCGC TTAAGAGTTT AGAGGTTATC GCTTTGACTT CAAGGGTGAG 98842 .......... .......... .......... .......... .......... .......... 289 CCAAATCTTC CGGGCTGCTA TGGAGTTCTC TTTCGTCTAA GTCCACCATT TTTGGACATA 98782 .......... .......... .......... .......... .......... .......... 289 GATATTTGTT TTAGTGAATG ATTAGTTCAT TATTTAGGGT TCTAACCCTT TATGTTTTAG 98722 .......... .......... .......... .......... .......... .......... 289 GCTTGTTATT TGGAAGTAGT TTTTGTACGT TTACTTTCAG GTTCTAGGTT GTTTACTTCT 98662 .......... .......... .......... .......... .......... .......... 289 GCATTTATAT AGTTAGTTTT TTAGAATCCT TGTTAAAGTT TACAGAAACC TCTTACTTAG 98602 .......... .......... .......... .......... .......... .......... 289 GTTTTTTTAC TTGCTTCTAT AGCTAAATGT CATAGTTTTT AGATTATTTA CTTTATTTGG 98542 .......... .......... .......... .......... .......... .......... 289 ATGGTAGTAG TGGTTCACCC ACCAGTTAGT TAGTATGGGA TCAAAAATCA CGATGGTCTA 98482 .......... .......... .......... .......... .......... .......... 289 GGTCGTGACA CAACAGAACC CTTGGCCTGG CTCAACTATC AGTGAAAGAC TTACTTAACA 98422 .......... .......... .......... .......... .......... .......... 289 TAGAATAAAA TCAAAAGATA AACTTTAACT TAAATATCTC AAAATTTTAA GCTCATAAAT 98362 .......... .......... .......... .......... .......... .......... 289 GTTTAGAGAA ACATTCAACT AGCCTCAAGA AAAACTCAAG TCTAGAACAC AACAATTGAA 98302 .......... .......... .......... .......... .......... .......... 289 ATGAACAAAA CTCATAAACT ACTATTGTCT ATCTATGTAT GAATCCTCTA GTACTACGAG 98242 .......... .......... .......... .......... .......... .......... 289 GGATGTCGGG ACAAGACCTC CAATCATCCT AAAAAATTGA AATAATATGA AATAAATAAA 98182 .......... .......... .......... .......... .......... .......... 289 TGAGGGATTC TAACGGAAGG AAGAAGACTC GCCAAACAAC TCTAAAACTC AGTTGGATCA 98122 .......... .......... .......... .......... .......... .......... 289 AGTGTTGGTT GATGATCCTG GTTACCTGTG TCTACATCAT GAAATATGCA AGAAAAATGG 98062 .......... .......... .......... .......... .......... .......... 289 AGACAATATA TGTATTGTAC GTGCATGCAA GGGGAAAACT AAAGCATGAC ATAAGCTTGA 98002 .......... .......... .......... .......... .......... .......... 289 ACTGAAATAA AAGAAACACT TACCTCGTCT AAACTCAACT CAACCTCAAC TAGCCTCAAC 97942 .......... .......... .......... .......... .......... .......... 289 TCATTTCAAT ATAAAGCAGT GATAAAGATG TAATATAAAG GAAGATTTTA AATAGTAGAT 97882 .......... .......... .......... .......... .......... .......... 289 AAATACTCCG TGTATTGAAA AATAAAAGTA ACTCATTTTG TATGTAATAA TTTAAAATAA 97822 .......... .......... .......... .......... .......... .......... 289 AGTATGTTTG GGAGATTATC TAACCACAAC CATCACAATG AATTATTTGA TGATACAACG 97762 .......... .......... .......... .......... .......... .......... 289 TCTCACCCAC GCTGCCCGAA CAGTCCTATA CCTTGTCGGG ATATATAACT CTTCAACTAA 97702 .......... .......... .......... .......... .......... .......... 289 CTATATCCAC TAGTTTATGC TTAAAAGCAA TAATGAATCA TCTAAAAGCA TGATCCTTTC 97642 .......... .......... .......... .......... .......... .......... 289 TATCCACATT GGCTACATGA TTTATGGGGG TTGTGAGTTG TTTGAGCTCT TCGCCATATC 97582 .......... .......... .......... .......... .......... .......... 289 GGTGCTCAAT ACTATTCTTA ATATCACTTA GCTTATATGT TTTAAAGAAA AAATTTCTTC 97522 .......... .......... .......... .......... .......... .......... 289 ATCCTCAACT TTAAGAATAT TACTCAAAAG ATTTAACCTA AAAAGAGATA GTGCTCAAAC 97462 .......... .......... .......... .......... .......... .......... 289 TCCTCATAAC TCATTTGGAA ATCTCAGTTT CCTTCTCTTT TTTAAATGTA AAAATTTTTG 97402 .......... .......... .......... .......... .......... .......... 289 CTCTTGGGAA TAATTAGTTC CAATATATCA TTTTAAAGAA AATATACGCT TCTTCAAATT 97342 .......... .......... .......... .......... .......... .......... 289 CAAATTCTCA AGTCTTAAAA TATATTAAAG AAGGTTTTCA AAAGACTTCT CAAAAGACTT 97282 .......... .......... .......... .......... .......... .......... 289 AAAATAACTC TCAAGACTTG ATTCTTAACT CTACCTTGAA TTTAGATTAT GAATTCAAAA 97222 .......... .......... .......... .......... .......... .......... 289 TAATGATTCA CGTTATGAAT GATTTCTAGA TTCGTAGAAT AGTTCAGAGT AGTTAAAGTC 97162 .......... .......... .......... .......... .......... .......... 289 AAAAGAGAGT AATTATACCC TTTGAAAGAA CTCAGACGGG CTAAATGACG GAGAAGGGGT 97102 .......... .......... .......... .......... .......... .......... 289 GGGGGCAGGC GACCTGAGTG GTGCACGACA CCTGCCCCTG AACTACATGA CACCTCTGAT 97042 .......... .......... .......... .......... .......... .......... 289 GGAGAATTAG TGTGGCAGGG CTCCAGCCCT TGCCCGGATT TTCCCGATTA ATTTCTTTCT 96982 .......... .......... .......... .......... .......... .......... 289 CATTTTCTTA CCCTAATTCG CCTCAAATCA AATGGTTTCT TACTCCACTC ATTTAGATTT 96922 .......... .......... .......... .......... .......... .......... 289 GAATATCCAA CATAAATACA CAATAAATCT ACTCAAAACA ACCCTCAAAT CACTAATTTT 96862 .......... .......... .......... .......... .......... .......... 289 CATCTCAAGA ATTCATAAAA TTCCCAACAA TCAAAATACG AAGCATTTTC AAGAAAACTT 96802 .......... .......... .......... .......... .......... .......... 289 ATCAAGAACA CAAATCCTTC AACTTCAAGA ACGAAATTTG CATTGAAATA GTTTATGTGT 96742 .......... .......... .......... .......... .......... .......... 289 CAATTAAATA ATATAATATA GTTTTAGTGG CATATTGTAA TATATGATTT AATTACCCAT 96682 .......... .......... .......... .......... .......... .......... 289 TAGCATGTGG CGTGGATAAG TAGTAACGAA AAATTCCCAT CAAATGGCTT TCGATCACAA 96622 .......... .......... .......... .......... .......... .......... 289 CCTGGGTTTG ACTCTTTTCG TTATTATTTT TATTATAACA TGATAATTAT AAGTTTTGAT 96562 ||||| || | ||| | | |||||| | |||||||| | .......... .......GAA TTATTCTTAT AGATATTCTA TCATAATT-T AAGTTTTGGT 331 ATAATGAGAT TGGTAATCAA ATATTAATTG TATTACATTA TATGAAAATT ATTAGGATGA 96502 ||| ||| || |||||| || |||||| | || || |||| || || || ||||| || | ATATTGATAT AGGTAATTAA ATATTAGGTA TAGTATATTA TAATAATATC ATTAGAATTA 391 TATTACTTGG AGAAATTGAA ACTTAACCCT AGGATTGAAA CATGGAAAAT ATGATAATTG 96442 | ||| | || || |||| | | |||||||| | |||||| ||||| |||| ||| TGTTATTCGG AG-AATTAAG ATTTAACCCT AAACTTGAAA TTCAAAAAAT ATGAGGTTTG 450 AAATGTTAAT TGGCAT-CAG AATTAGGAGT TTGAATATAA ATTCGGATAA GTTTTGGGTG 96383 | || | | | || || | |||| | | || | ||||| ||| |||| | ||||||||| ATCAATTGGT TTGAATAAAG ATTTAGAAAT TTTATTATAA ATTTGGATGA GTTTTGGGTC 510 TAAGCTAGAC CTATGGTAAT ATGGGGTGTT GTT-TTTTAA AAATCTTATT GTGATTATTA 96324 ||||||||| ||| | ||| || | |||| ||| ||| |||| ||| ||| ||||| TAAGCTAGAG ATATAGCAAT AT-GAATGTT GTTAGTTTCG AAATGATATC GTGGATATTA 569 A-TGTGAATA GATTGCTTTG AGTTCAAAGT TCAATAAAAT GGAAATGCTC AAATTTCGTA 96265 | | |||||| |||| ||| || |||| | |||| || |||| || || | | AGTTTGAATA GATTTTATTG GTTTGGAAGT CAACCAAAAG ACGAAGGCTC AAGTTCTGGA 629 GTGAATTGTT C-ACTTATTG AGGCAAGTGG ATTTCTAAAC TCTTGTTTAG TGTATGAAAT 96206 || |||||| | ||| ||| |||||||||| |||||||||| ||||||| || |||||||||| GT-CATTGTT CGACTATTTG AGGCAAGTGG ATTTCTAAAC TCTTGTTAAG TGTATGAAAT 688 GTGTGTATTT CCTTGTGGTA TATGTTT 96179 | |||||||| |||||||||| ||||||| GCGTGTATTT CCTTGTGGTA TATGTTT 715 hqPGS_C01HBa0216G16.1-_SGN-U331132+ (96604 96179) ******************************************************************************** EST sequence 9 -strand 2089 n (File: SGN-U315404-) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGGG GGAATATATA TATATATATA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA 661 TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA 721 AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA 781 TTTTAATTCG ATTCAACGGT ATGCAAAGCA AATTTATAAA AATATTGCAG CGAAATAAGC 841 AGCGATTTAT ACGATTGTGC ATTACACAAT CGCAGTGAAT GAAGATAGCG AATTATACAA 901 TTGCAGCGAA ATAGGCCATC AAATTATACA ATTTAGGCCA GCGAATTATA CAATTGTATA 961 TGTATAGCGA ATTATACAGT TTTATGTTTG CTATGGAGCG CAATTATGCA AACTTTGTTA 1021 TAACATACAA ATATGAATTT TTTATTTGCT ATACGTGAAA GTTGCCCTTA ATTAAATGCT 1081 CCACAGTCTA TACGAATATT TCCATTCTTA CCCGTCTTCA CACCAACTCG GCCCAATTTA 1141 GTCATCGCAT TAACAAATGC GGTTTCAAAA ACTTTAAAAT TACTGGCCCA CAAATTAACA 1201 GTACCTTTAG ACCTTTGGTC TGTGAACAAA ACTTGATCTG ATGTGAATAG GCCCATTCCG 1261 TTTTGCAAGT TTTGGAAATA CACATTGTCA AAAGCCCTAG GTGTTATTGG GTCCATGTTG 1321 ATGGCTATTC TTGGGTCCAC ATTTTTCGGA CACATTTGTT CTAATTGGGC TGCATACGTC 1381 TTGTTGAGAC TTGGATCCAC TGGGTTTTTA GGGTTAAAGT TGAAAATTCG GTTCGAGAAT 1441 TGGTCGCAGT GAGAAAATCC AACAGTATGG GCCGCAGATA AGGCAATCAT ATCAGCCTGA 1501 TTTAAACCAT GAGAGGCAAA CATTGTATTG AGTTGATCCA AATTGAAAGT AGGTTTAGGC 1561 AACTTTCCCC CTACATTTGT AGATTTTGAT GTCAAACCAT CTAATCTCCC CAATTCCACT 1621 GCATACCCCG GTCCACCGGA TAGTTGAATA ACATCTCGAG TGGCTAAGGC AAGAATATCA 1681 GCACAAGAAA CTTTATTTTT ACAACTTGGG ATCGCATCAA CTGCGGCTTT TGCTTTGATA 1741 ACTGTGTCAA ATCCATCTCC AGCCAATGAA AGATTATCTG GGTGATCTTT TTCTGCTGTG 1801 TTCCCTGCCG TTGATGCTAT TATCACCGAT GCATCACAAC CCTCAACAAA GCAATCATGG 1861 AAGAAAAGAC GAAGAACAGC CGGAATTGTG ACAAACGTTT GTTTGAATTT CTGGTTAACA 1921 ACATTACGCA CAATGGATTC AACATTAGGA CAAGTTTGGG CATAAAAATT GGTTTTGAGT 1981 TGAGCATCTA CCAAGTTTGG CATGAAAATA CTAACACAAG AAATTGACAA AAATGATGTA 2041 ATAAAAACTT GTAAATAACC CATATTTTTT TCTATATATA ATCAAAAAT Predicted gene structure (within gDNA segment 129965 to 114963): Exon 1 129805 129790 ( 16 n); cDNA 290 305 ( 16 n); score: 0.625 Intron 1 129789 129409 ( 381 n); Pd: 0.986 (s: 0), Pa: 0.000 (s: 0) Exon 2 129408 129403 ( 6 n); cDNA 306 310 ( 5 n); score: 0.833 Intron 2 129402 123540 (5863 n); Pd: 0.716 (s: 0), Pa: 0.000 (s: 0.86) Exon 3 123539 123390 ( 150 n); cDNA 311 456 ( 146 n); score: 0.840 Intron 3 123389 123236 ( 154 n); Pd: 0.994 (s: 0.80), Pa: 0.000 (s: 0.70) Exon 4 123235 123095 ( 141 n); cDNA 457 590 ( 134 n); score: 0.741 Intron 4 123094 122825 ( 270 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.64) Exon 5 122824 122781 ( 44 n); cDNA 591 633 ( 43 n); score: 0.636 Intron 5 122780 122115 ( 666 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.62) Exon 6 122114 122022 ( 93 n); cDNA 634 719 ( 86 n); score: 0.645 Intron 6 122021 119945 (2077 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0) Exon 7 119944 119937 ( 8 n); cDNA 720 727 ( 8 n); score: 0.875 Intron 7 119936 119021 ( 916 n); Pd: 0.702 (s: 0), Pa: 0.000 (s: 0) Exon 8 119020 118998 ( 23 n); cDNA 728 751 ( 24 n); score: 0.717 Intron 8 118997 118829 ( 169 n); Pd: 0.738 (s: 0), Pa: 0.000 (s: 0) Exon 9 118828 118790 ( 39 n); cDNA 752 787 ( 36 n); score: 0.744 PPA cDNA 19 1 MATCH C01HBa0216G16.1- SGN-U315404- 0.757 520 0.249 C PGS_C01HBa0216G16.1-_SGN-U315404- (129805 129790,129408 129403,123539 123390,123235 123095,122824 122781,122114 122022,119944 119937,119020 118998,118828 118790) Alignment (genomic DNA sequence = upper lines): CTGGGCTCTA TGCAAGGTAG ACATAAATTA ACGTGCAAGT TACACAGTTA GTAGGAAAAA 129746 || | || | |||| CTCCATTTTA TACAAG.... .......... .......... .......... .......... 305 AATTATATTC GCTAGTCAAA TAAATTATTT CGATGAATGA CTATTTAACT CGAATATCCT 129686 .......... .......... .......... .......... .......... .......... 305 TTTGAACTTC TTTTCAATGT TGGTACTTTT CATATGAATA CAGCAAGGTG CAGGAGTTGA 129626 .......... .......... .......... .......... .......... .......... 305 TCAAAAATCA ACGGTGGCTA TAGAAACATT GCGTCCCAAA TTACAGGTAA CTGGAACCCT 129566 .......... .......... .......... .......... .......... .......... 305 TGAAAAAACT ATGAATCAAC TTTTTTTTTA TATAAAAAAA AATATTACTC TAATTTATTA 129506 .......... .......... .......... .......... .......... .......... 305 TTGTTATTAT TATTTTTATG AACTTCATTT ACTAGTGAGA ATATATTATT TGAAATGAAA 129446 .......... .......... .......... .......... .......... .......... 305 CAGAGAACAA CTCATCAACA ATTGCCTCCT AGAAGACCTG CTTGTACATC TTGATTCACA 129386 || ||| .......... .......... .......... .......CT- CTT....... .......... 310 TGTGGTACCT TCAAAATGCT GATTTTGTTA TGTTATTTGC TGGCTAAGTA GACATAATAT 129326 .......... .......... .......... .......... .......... .......... 310 GTCACTATAA ATACATGGTT CTTTTCTTCG ATATGGGACT TGGATGTAAT CACCAATAAC 129266 .......... .......... .......... .......... .......... .......... 310 TCTTTAAGAA CTTTTGTTGC TTAAGCATTT ATAAATTATT ATTTCCCACT TTTCATAGTC 129206 .......... .......... .......... .......... .......... .......... 310 TCTAAATGTA TCTTTTTTTA AAAAAAATTA TTTTCTAGTA AAAGTAGTTT CTAACGGTGG 129146 .......... .......... .......... .......... .......... .......... 310 GATGTCATGA TAAAAAAAAA TCGTGATATT TTGAGTGTTG CGATATTCAT ATCTTTTATA 129086 .......... .......... .......... .......... .......... .......... 310 CAATAATAAA AAATATGTGA AATATTGTTT TTTTTTTTAC ATATTCACGT ATTTATATCG 129026 .......... .......... .......... .......... .......... .......... 310 GGCACCGTAT TACCAGTAGT CTAGAGATTG ATATTTTGTT AAGTTAAAAA GAAAAATTGA 128966 .......... .......... .......... .......... .......... .......... 310 TTAGAATGCC TTCCTTTCTT GTCTAGAGAA TGATATTTTG TTAAGTTAAA AAAAAATTGA 128906 .......... .......... .......... .......... .......... .......... 310 TTAGAATGCC TTCCTTTCTT TTAGAGTATT GTTTTTAGTC AATAGGACGG TCTCGAAAAC 128846 .......... .......... .......... .......... .......... .......... 310 TTTTATTATG GTAGAAGCCT AATCAACAAA AGGTGTGAGA CTATATTATT TTTTTGACAC 128786 .......... .......... .......... .......... .......... .......... 310 TTGTATAAGT AGGTCATTTA TGTACTTTTC TACTTTAAAG TAAGAACTTT CTACAATTAG 128726 .......... .......... .......... .......... .......... .......... 310 AGAGAATATA TTTATGCATA AATTGAGTTG AACAAATATA AAAAAAAATG CAAGAAAAAT 128666 .......... .......... .......... .......... .......... .......... 310 TATGTGTGTT TGCTACTTTT TTTTAATCAT TATTAATATT ATACTAATGC ATAAATTGAG 128606 .......... .......... .......... .......... .......... .......... 310 TTGAACAAAT ATAAAAAAAA AATGCAAGAA AAATTATGTG TGTTTGCTAC TTTTTTTTAA 128546 .......... .......... .......... .......... .......... .......... 310 TCATTATTAA TATTATACTA ATTTTTGAAT TATATTCGAA ATATTATTGT CATTATAGTT 128486 .......... .......... .......... .......... .......... .......... 310 GTACGTAAGT TTGACAAATT TATTTCGATA TGATTATTTT TGTGTATTCA TTTTGTGTTA 128426 .......... .......... .......... .......... .......... .......... 310 AAATTCTTTC ATAATTATTG TGATTTTAAA ATGTAGTTAC TTTATTTTAA TTGTACCATC 128366 .......... .......... .......... .......... .......... .......... 310 TGAAATGTCG ATTGTTACAT TATTTTTAAA TTAAACTTTT GAAGGAAAGT AAAAAGAGTT 128306 .......... .......... .......... .......... .......... .......... 310 CATTATTGTG GGGATGATTG CTTAAAACAA AGTATCACTA TTCAAAGAAA TAGTTTTTAA 128246 .......... .......... .......... .......... .......... .......... 310 AAAGTATCGT TATCCAAATA ACATTTTTTA GTTAAATTTG TGTAGAATTT CAGTTGATGT 128186 .......... .......... .......... .......... .......... .......... 310 AGAATATACG ATTTATCATC ATTACAATTT GATCATCAAT TTTTTTAATA AAATAGTATT 128126 .......... .......... .......... .......... .......... .......... 310 TACAATATTC TCTCGAGTAC ATTTTGTTTA TTTTTGATTT TTTTAAATAT TATATGATAA 128066 .......... .......... .......... .......... .......... .......... 310 TTGATAAATT TGTGAAATAA TAATTTGTTT TAATTAAAGA TGGCTAGATA TAAAAAGAGA 128006 .......... .......... .......... .......... .......... .......... 310 TTAAAGATCT GAATTAATTT TTTATTTCTT TTTAACATCA ACACGGCTGT CAACTTTTTT 127946 .......... .......... .......... .......... .......... .......... 310 CAAACGTAAA CGAAAATGTT AATTTTTTAT TAAAAAATAC ACATTTAGTT TGAACATCAA 127886 .......... .......... .......... .......... .......... .......... 310 AATATGTAAT TTCAATTTTT AATAAAATTA ACAAGATTAT GATTTGATTT AAGAAACAAT 127826 .......... .......... .......... .......... .......... .......... 310 GTTACAAAGA AAATTCAAAA AGTTATTTGA CTAAATGAGC ATTCAACAAG TACAAAATGT 127766 .......... .......... .......... .......... .......... .......... 310 GGACCCTACA GTCATTTTTA ATTATATTTT AATAATTATT TAGTGAATTG TATTATGTTT 127706 .......... .......... .......... .......... .......... .......... 310 GGTAAGATAT ATATTAATTA TTTATAAAAA TTATTTTACT TTTTGTTATT TTAGTTTAGA 127646 .......... .......... .......... .......... .......... .......... 310 TTTAAAGTTT TACTTTTTAA AAACTATTTC TTTGAGTAGT GATATATTTT TTAAGCAATC 127586 .......... .......... .......... .......... .......... .......... 310 ATCCCCATAA TAATAATATA ATTAACTTTT TTTTTACTTT TTTTAAAAAA ATTATAATAA 127526 .......... .......... .......... .......... .......... .......... 310 GGTCACAATT GATATTTCAG ATCATAACAA TTAAAATAAA ATGATTACAT TTTAAAATCA 127466 .......... .......... .......... .......... .......... .......... 310 AAATAATTAT GAAAGATTTT TTTTAAAAAA ACACACACAA TATGAATACA CACAAAAATA 127406 .......... .......... .......... .......... .......... .......... 310 TCATATAAAA AGTTTGTCAA ACTATCATAC AACTACAACA ATAATAATAT ATCCAGTATA 127346 .......... .......... .......... .......... .......... .......... 310 ATTCATAAAT TAATATAATT TTAATAATGA CTAAAAAAGT AGCAAACACA TAATTTTTCT 127286 .......... .......... .......... .......... .......... .......... 310 TGTATTTTTT ATATCTGTTA AACTCAATTT ATGTAAAAAT ATATTTTTTC TACCCTGTTA 127226 .......... .......... .......... .......... .......... .......... 310 GTTATAGAAA GTTCTCGTTT TAAAATGGAA AAGTACATAA GTGACTCACT TGCCCATGTA 127166 .......... .......... .......... .......... .......... .......... 310 TCAAAAATAA ATACTTTCAC ATAATTTTTG TTGATTGATC CTCTAGCATG ATAAAAATTT 127106 .......... .......... .......... .......... .......... .......... 310 TCGACCAGTT AAAAGTGAGG ACATTGCCAA TTCTAAATAA ATATTATCTC CATTTTTAAA 127046 .......... .......... .......... .......... .......... .......... 310 AGAATAACAT TATTTTTTTA GTCTATTTAA AAAGAATGTC CTTTTTTTTT TGACAACACT 126986 .......... .......... .......... .......... .......... .......... 310 TTAACTTTAA TTTTCCACGT GGTATGTTTA AAATCACAAG ATTAAAAAAT ATTTTGATAC 126926 .......... .......... .......... .......... .......... .......... 310 ATTTGATATA ACTTTAATTT AGAACCACAA GATTATAAAG TCTTATTTCT TTTCTCAAAC 126866 .......... .......... .......... .......... .......... .......... 310 TCTATTCCAA ATTAAAATAG ATCATCATTT TTTAAGCGGA GGAAGTAATT AAATTTTCTC 126806 .......... .......... .......... .......... .......... .......... 310 TCTAGTGAAT AATTGATATG ATAAACTACA TCTGAAAATG AAAATGTTAC GAGTTAGTTA 126746 .......... .......... .......... .......... .......... .......... 310 GTGATGTATA GTACCACTTA TCAATTAATG GAGCCTATAA GTATAGCTCT AATCACATGT 126686 .......... .......... .......... .......... .......... .......... 310 TGCAATGATA GTATGTACAA TCATGTAAAC TGTCCTATAT TGAACCTCCT TTCATTTGTT 126626 .......... .......... .......... .......... .......... .......... 310 TTTAATGTTA ACTTCTTCAT ATTTTAAATA TAATTAATGA TAATTTTAGC TCCATAATTG 126566 .......... .......... .......... .......... .......... .......... 310 TTGACTCTTT ATAGAATATA ATAAGAGAAA TGTTATTTTG AATTCCTAAT AAAAAAATTT 126506 .......... .......... .......... .......... .......... .......... 310 AACTGTGCAG GTATCCTATT ACCCCCTAAA TAATTCCAAA TTTATATTAC TGCATTATTT 126446 .......... .......... .......... .......... .......... .......... 310 TGTTTTTTGA TCAATTCTTA ATTTTATCAC ATACCAGTCA TTATGTGACA CGTGTTATTT 126386 .......... .......... .......... .......... .......... .......... 310 AATTTGAAAT ATAATTTTTC TTTTCACTTT AGAATTTTCT CTCTTAATTT TTGATTTGTT 126326 .......... .......... .......... .......... .......... .......... 310 TTAGATTTTA TTACTTTAAT TTTAATTTCA TTTTGAACTA TACTTTATCT TCCACCCCTA 126266 .......... .......... .......... .......... .......... .......... 310 CTTCAAGCTA CCCCTCCTTC CATTTTCTTT CTTTTTCTTC ACCTCCCATC CTCACCTCAC 126206 .......... .......... .......... .......... .......... .......... 310 TCTACCCTCA CGTTAAGTTG AGTCCATCCA TTTTCTTTAA ATTTTCTTCT TCTTCTTCTT 126146 .......... .......... .......... .......... .......... .......... 310 TGGTGAAATT CTTTTATTTA AAAATTCATA CTATTTTCTA TACTTTATTG AATTATTGAT 126086 .......... .......... .......... .......... .......... .......... 310 GACAAAATTT AATTATTTTT CTAAGAAAAA TAAAAATATT GAAAGTATCA TCAATTAATT 126026 .......... .......... .......... .......... .......... .......... 310 TATCTCATTT TCATATAACT TCAATACTAG AAATGATAAT TTTGAAAGAA TCAATGAATT 125966 .......... .......... .......... .......... .......... .......... 310 CTCCGAAAAT TGATTAATTT TGATTGAAAT TTTGATTTTA AAAAAACAAA TAAAATATAT 125906 .......... .......... .......... .......... .......... .......... 310 TAATTATTTT GAAATCTAAT GAGTTTATCA AATTATTCAA ATGTAATAAA ATATTAAGAT 125846 .......... .......... .......... .......... .......... .......... 310 ATAATTTTAA GATTGAAGAG AGTTAAACTA ATAGTAGTAA AAAAAAGAGG TAGAATCGTT 125786 .......... .......... .......... .......... .......... .......... 310 GTAAAAAATG ACATTGAAAG TGAGAAGGTT CAATGACGAT GACAAGGAAT TTTTAAAAAA 125726 .......... .......... .......... .......... .......... .......... 310 GGACAAAAGA AAAGAAAAAA TAATAAGGAA AAAAGTAAAA ATTAATAAGA AAAATAAGAA 125666 .......... .......... .......... .......... .......... .......... 310 GATATATCTT ATAGCAAAAT ACTTGTAAAC ATAAAATTAT ATTTGTTTTT TTAGTTTGTT 125606 .......... .......... .......... .......... .......... .......... 310 CATGTTTTTT AAAAGAGTGC ATACGCTCTC CATGTCACGT GGACAAAAAA TGATATAATA 125546 .......... .......... .......... .......... .......... .......... 310 ATATCAGATC AAGATTGTTT AGAGGGGTAA TATGACACTT GCATAGTTTA GGTGTCTTTA 125486 .......... .......... .......... .......... .......... .......... 310 AAATTTTTGG GACAACTTCA AGTGTCACTT ATGTATTTTT CTCATACAAT AACTAAGAAT 125426 .......... .......... .......... .......... .......... .......... 310 TTGTGCCAAT AAAATATAAA AGTTTGAAAC TTAAGTCAAA ATTTTATACA CCAAAGAATA 125366 .......... .......... .......... .......... .......... .......... 310 TAATTACAAT TTTTTAAACT TACTATTGAA TTATAATTTA ATCTATTAAG AAATCTAAAT 125306 .......... .......... .......... .......... .......... .......... 310 AATTGTAAAA TTGATAACTC AATAAAATAA TCTAATATCT AGATCATTAT TAAAAGAAGA 125246 .......... .......... .......... .......... .......... .......... 310 GCAAGTTTCA TATATAACAA ACACAAAAAT TATATTTGTA TGTTATTACT ATAGTTTGCA 125186 .......... .......... .......... .......... .......... .......... 310 TAATCACGCT CCAAAGCAAA CTTTCTATAT GATATGGTCA TTTCACTATA CATATATACA 125126 .......... .......... .......... .......... .......... .......... 310 AAATAAGTTA TGACTATTTC ATTATATATA TATATATATA TATATATATA TATATATATA 125066 .......... .......... .......... .......... .......... .......... 310 TATATATATA TATATATATA TATATATATA GCAATTGTAT GATCTGTTTT GGTATACATA 125006 .......... .......... .......... .......... .......... .......... 310 TACAAAAGAA TCAGTTGTAT AATTTGTGTT TGTATAAAGT GATAAAGAGA GAGAAACAAA 124946 .......... .......... .......... .......... .......... .......... 310 AGAAAACTGG GCAGTGGAAG ATCATATTTG TATAATCGTA AGTGTATATA ATGAAAATAT 124886 .......... .......... .......... .......... .......... .......... 310 ATGCATATAT ATTTATATAT ACAATTTTCT CTCGCTTTAT ACAAACACAA ACACAAACGC 124826 .......... .......... .......... .......... .......... .......... 310 AATGTATAAA TTTGTGTTTG TATAAAGTGA AAGAGGTGAG TGAGAGTAGC GAGCAAGATC 124766 .......... .......... .......... .......... .......... .......... 310 TGGGAGAGGG GAGAAAGGGG GAACGAAAAT GTATGTATAT ATACAATTTT CTGTCGCTTT 124706 .......... .......... .......... .......... .......... .......... 310 ATACAAATAC AAACACATTT TATACATTTG TATTTGTATA AAATCAAGAG AAGCGAGTGA 124646 .......... .......... .......... .......... .......... .......... 310 GACTACCTAG CGAGAACAAG AGTGGCGAAT GAAATTCACC AAGGAGAGAG GCAAAATAAT 124586 .......... .......... .......... .......... .......... .......... 310 AACAGTTTGC TACGGGGTAC AACTAATCAA ACTATGGTCA TAACATTTAA TTTGAATTAA 124526 .......... .......... .......... .......... .......... .......... 310 CACTTTGCTA TTATATATAT AATTTTCCCT TAAAAGCATA ACTCATTTGT AATGACACAG 124466 .......... .......... .......... .......... .......... .......... 310 AAGGTCATTT TTGAAAATTT TCACAAAATT GTCATTTTAC CCCTCTCAAT AGTTTCCTCG 124406 .......... .......... .......... .......... .......... .......... 310 AGTAATTTTT GACTTGTTCG TGAAGTTGAT TTGAGGATTT TAAACTATTT GATAACTTCG 124346 .......... .......... .......... .......... .......... .......... 310 ATTATTTAGT TGGTGGTATT TATTAAAGAG TAACTTTCAC AAATAGCAAA CATAAAAATC 124286 .......... .......... .......... .......... .......... .......... 310 ATATTTGTAA GCTATAGCTA TACTTTTCAT AATTGTTCTC CATAGCAAAC ATAAATATGT 124226 .......... .......... .......... .......... .......... .......... 310 ATATTTCTCT ATACATATAC AAAAAAAACA ATTGTAGAAT TCGCTACACA TATATAAAAA 124166 .......... .......... .......... .......... .......... .......... 310 AATAGTTGTA TAATTCGCTA TACATATACA AAAGAAAGTA GTTGCATACA AAATATCAAT 124106 .......... .......... .......... .......... .......... .......... 310 TGTATAATTT GTGTATGTAG AAAACGAGAA AGATAGAAAG ACAAAAGAAA ATCGGGCAGG 124046 .......... .......... .......... .......... .......... .......... 310 AAAATATTTG TATTGTATAC TTATAAGTGT ATATGATGAA GATATAATAT TTGTATGTGT 123986 .......... .......... .......... .......... .......... .......... 310 ATATACAACT TTTCCTCATT TTGCACAACA GAAACACAAT TTATTCACTC CGTTTCTGTT 123926 .......... .......... .......... .......... .......... .......... 310 TGTATAAGCG AGAAAGGCGA GAGTAACATG CGAGATCGGG GAGAGGGGAG AAAGGGGAAT 123866 .......... .......... .......... .......... .......... .......... 310 GAAAATATAT CTATATATAC AATTTCTCCC GCTTTATACA AACACAAACA CATTTTATAC 123806 .......... .......... .......... .......... .......... .......... 310 ATTTGTTTTT GTATAAAATC GAAAGGGGAC AAGTGAGAGA GGGAGAGTGG CGAGCAAGAG 123746 .......... .......... .......... .......... .......... .......... 310 TTTGAGGGAA AGAAGTGACC GGAAAACAGT TTGCTACAAG ACACAATTAA ATCAAAGTGT 123686 .......... .......... .......... .......... .......... .......... 310 GTTATAGCAT TTAATTTGAA TTATTAGTTT ATCATTATAT ACAATTTTTC CTTTATTAAA 123626 .......... .......... .......... .......... .......... .......... 310 TCATTTATCT ATTTAGTTGG TGGTAAATAA GCTAACCCAT AATTTTTGTT TAATACCCTT 123566 .......... .......... .......... .......... .......... .......... 310 GCCATGTAGT CCATGTATAA AAAAGGGGGA AAATCGTATA TAATAGCAAA CTGATAACCT 123506 |||| |||| ||||| |||||||||| || ||| || .......... .......... ......GGGA AAATTGTATA TAATAGCAAA CTAGTAATCT 344 AAAATAAATG GAGTATCCAG GGTTTGATTT ATTTGTGCTC CATAGCAAAC GTTTGCCAAA 123446 || |||||| ||||| | || ||||||||| | |||||||| |||||||||| ||| || ||| -AACTAAATG GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA 403 AATTGTCAGG CGCCTCTCTC CCGAATATCT CGCTTGCCAC TCTCCTCCAA TCTCTCGCTC 123386 |||||||| || ||| ||| || || |||| |||| |||| || ||||| |||| | GTTTGTCAGG CGTCTCCCTC CCAAAAATCT CGCTCGCCA- -CT-CTCCAT TCTCGC.... 456 GCTTCCTCAC ATTTCATACA AACACAATTG TATAAAAATT ATTTCTAATT GTATAAAGTA 123326 .......... .......... .......... .......... .......... .......... 456 GAGAAAATTG TATAAATACA TATATTTTTG TTCCCCTCTC TCCCCTCTTC CAGATTCGCT 123266 .......... .......... .......... .......... .......... .......... 456 CGCCACTCTC CCGAATCTCG CTTGCCGCCC TCGTCTTTCT CACTTATACA AACAGACACG 123206 ||| || ||| | | ||| | || ||| | .......... .......... .......... TCGCCTATCT CGC-TAT--A TAC--ACA-G 480 AAATGTATAA ATTGCATTTA T-GTTTGTAT AAAGCGTGAG AAAATTATAC ATACACATGC 123147 || ||||||| ||| ||| | ||||||| |||||| ||| |||||| || ||||||||| AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 540 AAGTACATAT ATTTTCGTCC TATACACTTA TAATTATACA ATAAAAATAC TTCTCTGCCC 123087 || | |||| || ||||| ||||||| | |||||||||| | | | || | AAAAATATAT ATCTTCGTGT TATACAC-T- TAATTATACA AATTACAAAC AT........ 590 AGTTTCTTTT GCCTTTCTCT CTTTTTCTTT TTATACAACT TTCAAATTGT ATCTAATTCC 123027 .......... .......... .......... .......... .......... .......... 590 TCTCTTTCTC GTTTTATACA ATTCGATTCA ATTGTACATT CCTTGTCAAG TCTCTTTTGT 122967 .......... .......... .......... .......... .......... .......... 590 CTTTCTCTCT TTCTCATGTT ATACAGATTC AAATTGTATA AAATCATTCT ATACACTTAT 122907 .......... .......... .......... .......... .......... .......... 590 AATAATACAA TTCTTTTTAT ACACTTCGTT TTATATAGTT CTCTGTCCAA ATGTCTTTCT 122847 .......... .......... .......... .......... .......... .......... 590 CTTTCTTGTT TTATACACTT CGTTTTATAC AATTTGCTTC ACAGTATATG TATAGCGAAT 122787 ||| | | || | | | | || | | | | ||||| .......... .......... ..TTTACTTC AA-ATATTGC AGAGAAAAAG GCCAACGAAT 627 TATACAGTTT CTATGTTTGC TAGGGAACGC AATTATGCAA ACTTTGTTAT AGCATACAAA 122727 |||||| TATACA.... .......... .......... .......... .......... .......... 633 TATGAATTTT TTATTTGATA TATGTGAAAG TTGCCCTAAA AAAAGTTAGT GAGAATTAAT 122667 .......... .......... .......... .......... .......... .......... 633 AATGATTTAT TAATTAACTC AAAAAAATTA AACCTTAATA ATTAAAAACG AATTGAGCAA 122607 .......... .......... .......... .......... .......... .......... 633 AGGTCTTACC TGTAGACAAA GTAGCCGCAG ACGTAAGAAC AGATGGGCAT GAAATCACGA 122547 .......... .......... .......... .......... .......... .......... 633 CAAGACTATT CTTAAATTTG AAGTGATGGT TCTCAATCTG CATGCCAGGT TAGTGTTACA 122487 .......... .......... .......... .......... .......... .......... 633 GTTATAAATT AGATATAATG TTAATTTGAT ACCTAGGTGA GAGGTTGAAT GGCTTGGTCC 122427 .......... .......... .......... .......... .......... .......... 633 ATGTATAATA TAATTTAAGT AATACCCTAA TATCACTTTA GATCATAGTT CTTTCGAAGA 122367 .......... .......... .......... .......... .......... .......... 633 AAACCTCCCA GTGAAATGTC GCTACTTCGG CAAAACCAAA ACGCAGTGAC TGACTTGCAC 122307 .......... .......... .......... .......... .......... .......... 633 CAAGTAAGAA CTAAACATGA TATTAATATT ATATTACAAT CTTAATGTGG TGAGAGAGGA 122247 .......... .......... .......... .......... .......... .......... 633 AATAAGAAAA ATTGAATTGA ATAGGGTTGT TGTTCACATG CGTATTTGAA ATTGGCATGA 122187 .......... .......... .......... .......... .......... .......... 633 ATATATTTCT TAAAGGGTAA ATTATGCCAT GATTGGATAG TGATGACAAT AATTAGTATT 122127 .......... .......... .......... .......... .......... .......... 633 TAACTAGTTA TCATTGGAAA TTATATATAT ATATATATAT ATATATATAT ATATATATAT 122067 |||| || ||||||| || | | | ||| | || | | | || | .......... ..ATTGTGAA TTATATA-AT -TGCAGTGAA ATACA-AT-T TTCTCTAACT 677 ATATATATAA CAAGTAGTCA TGTATCATGT ATGTTCTTTT ATTATAGTTA AAGATACTGG 122007 |||| | | |||| || | | ||| ||| | || |||| ||| TTATACAACA GAAGT-GT-A TATATTGTGT -TTTTGTTTT TGTAT..... .......... 719 GCATGTTTTG TTTAAATTTT GGTTTGAGAA AGCGGCTAGG CCACTGTCAT TTACGTGGCT 121947 .......... .......... .......... .......... .......... .......... 719 GTAGTTTGAA AATACATTGT GAAAAAAATT GTAAATTAAG TAGTGATAAA CCTGACAACT 121887 .......... .......... .......... .......... .......... .......... 719 ATGAAATAAA ATCTTAAAAT GAGTTTATCA TTGGAAACCA TAGAATTTTG ATAATTCTTT 121827 .......... .......... .......... .......... .......... .......... 719 TTAATATAAT GTATGTCAGG TTTAGATATT GATTTTGAAG GTCATTGGTG GCTGAATCCC 121767 .......... .......... .......... .......... .......... .......... 719 TTGTTATATA AGAATTTTTA CTATGCTTAT CATATTAAGA TCCAAGTTTG ATATATTAAG 121707 .......... .......... .......... .......... .......... .......... 719 ATGTGTAATT GAATATTGGG TGTATTATAT TAAATGAAAA CTATTAGGGT TGTAGTGTTT 121647 .......... .......... .......... .......... .......... .......... 719 GGAGAACTTG AAACTTAACC CTAGACTTGA AATTTGAAAA AACAAGTTAG AGGAAGTTAG 121587 .......... .......... .......... .......... .......... .......... 719 CATGTAATTG ACATCAAGAT TTGAAATTTG ATTATACATT GAAGTGAAAT TTTGAGTCTA 121527 .......... .......... .......... .......... .......... .......... 719 CGCTAGACCT GTAGTGATAT GAATGTTGTT AATTCTAAAT CTTATTGTGA TTATCTATTT 121467 .......... .......... .......... .......... .......... .......... 719 GAATAGATTC TATTGGTTTG GGAGTCAACC GAAATAGGAA GGGTCAAGTT CTTACGTAAT 121407 .......... .......... .......... .......... .......... .......... 719 TGTTTGATTG ATTGAGCCAG GTGGATTTCT AAACCCTTGT TAAGTATATG AAATTCGTGT 121347 .......... .......... .......... .......... .......... .......... 719 ATTTCCTTGT GGTATGTGCT TGGGAGTAAT GGACCCGGTG AAGGGTTGAC TTGTCCACCT 121287 .......... .......... .......... .......... .......... .......... 719 TGATTGATTC TATTGATCAA AAGGGGTAAT AAAAGACAAT GTGATTAATT GTTTATGTCT 121227 .......... .......... .......... .......... .......... .......... 719 AATTGTGTTC TTTACTAAAC CTATATAATT GTGATTATTA AGGTGATTAT ATGTCATAGT 121167 .......... .......... .......... .......... .......... .......... 719 GACATTTGAT TTATTGAGAT GTTGCATTAT CCCCTTTATT TGATATCATA TTCTGCACTT 121107 .......... .......... .......... .......... .......... .......... 719 GCATCGACAT GAGTAAATGT CAAACACGTG GAGATCGTCT GTTTTGTGAT CGAGTAAGAT 121047 .......... .......... .......... .......... .......... .......... 719 TATAATTTGG GCACGTGGAG ATCGTCCGTG CAACGAGGAA TTGATTATGA TTATAAGTTG 120987 .......... .......... .......... .......... .......... .......... 719 GGCACGTGAA GATCGTTCGT GCTGGGATTA TTTGATTTTA TTATAGTGCG TTGAGATAAT 120927 .......... .......... .......... .......... .......... .......... 719 CCGAATAGAC ACTTGGAGAT CGTCTGTGTC GGTATATGGA CCTCGCGAGT CCCCCGGGGG 120867 .......... .......... .......... .......... .......... .......... 719 TCATGAACTT TCGATGTGTT TTCGAGGAGT ATCATGTATA TACGGTTGAG AAAGTACTTG 120807 .......... .......... .......... .......... .......... .......... 719 GTATTTTGAG GCTTATCACT TTGTGGTGTC ATATTGCATT GCATCCCATA ACATTATTCA 120747 .......... .......... .......... .......... .......... .......... 719 TTTTTTTATG ATTATGTGTT CATTGGTTGT TGGAAAGTAC TTGATATTTG ATTACCTCTA 120687 .......... .......... .......... .......... .......... .......... 719 TTTGATGAAC TTGATCTTGT CTGTTGCTGA TATTGTGAGT GCCTTTTTGT GAAAGTTTTG 120627 .......... .......... .......... .......... .......... .......... 719 ATTATTGAAT ATTGATTTTG TAGTTGAGGA TGTTTAATTT GTTAAAATGA TTTTGATAAG 120567 .......... .......... .......... .......... .......... .......... 719 CTGGGTGCTA TGCAAACTGT GAAATGTTAG GTTGGACTGA TTTTTATGCA GGTTGTAGTT 120507 .......... .......... .......... .......... .......... .......... 719 GTGGAGGTTT GATTGGTGTT TAAGGAGTAC CCGTATTTTT ATCCCCTTAG CTTGTGTTTA 120447 .......... .......... .......... .......... .......... .......... 719 GAAGTTTACT TGCTGGGTAC TGTGTGGTTT TGATACTCAC CCTTTGCTAC TACAATTTTT 120387 .......... .......... .......... .......... .......... .......... 719 TTGTAGGTTA CTAGCTCGGA CCTTTGTGAT ATTTCTCTTC TCCTTTTCCG AGGCTTCTTG 120327 .......... .......... .......... .......... .......... .......... 719 TGGAGAATTG TAAGGTAGTT ATTTGTCATT TCAGCAGACC TTCTTTCTCC TATTTATGAT 120267 .......... .......... .......... .......... .......... .......... 719 CTTGTTCTAT TCGAGAAACA ATGTCATTTG AGACTTATTA TTTTTCTTTG AATCAATTGT 120207 .......... .......... .......... .......... .......... .......... 719 AATACTTTAG AGGCTTGTAC ACGTGACAAC AAGATTTTGG GGATATTTTT GAATAAATTA 120147 .......... .......... .......... .......... .......... .......... 719 TGAAATTTTT GCATTTTATT GTAATGATCG AATTTTAAGT TTACTTGTAT TGGTGGGATA 120087 .......... .......... .......... .......... .......... .......... 719 AAACGAGTGT CATCACGTCC ATTTTTGGAT CGTGACATCA AATCACAACG ACAACAATAA 120027 .......... .......... .......... .......... .......... .......... 719 TATTATACTT AATGTAATTC TCCAAGTGAA GTATGATTCT TATCAAGTTG AATAATATAA 119967 .......... .......... .......... .......... .......... .......... 719 TATAGAAACA AAGTTAGTTC AGAAAGTGAG GTGAGTTTTG AAGTTCAAAT TTTTGTAGTC 119907 |||| ||| .......... .......... ..AAAGCGAG .......... .......... .......... 727 AGTTTCTTGA TCTTCTTCCT TTAAACCACT TCCCATTTTT TGATTTGTAA GCTAACTTTT 119847 .......... .......... .......... .......... .......... .......... 727 CATGAAAGGA ATTTTGTAAA TCCAAATATA TTTACGCTCC AATTACCTCA CTTTCCTCAA 119787 .......... .......... .......... .......... .......... .......... 727 GTGCAACATC CTCTATTGAC ATATATCTTT CCAAATTAAC ATCTTTTGAG TAATCGCCAT 119727 .......... .......... .......... .......... .......... .......... 727 GAATCTCTAT AAAAATAAAC ACTGGATCAC AAAGTCATAT GGTGTGATTC ATACGATAAC 119667 .......... .......... .......... .......... .......... .......... 727 GATATAAACA ATAAAGAAAA AGTATTTCCA ATATAACAAA TAACACATAT CATATATCTA 119607 .......... .......... .......... .......... .......... .......... 727 ATGTGTTCCC AATAGCCACC CATTGTTATA AAATTACTTA GTTGGAGTTT GGGATTTGGC 119547 .......... .......... .......... .......... .......... .......... 727 TAACTAACCT CTTAGTGAAA AGATATTAGT CCTTGAGACC TCCTATGTTC ATCTTCGCTA 119487 .......... .......... .......... .......... .......... .......... 727 TAATCTAGGA TGATTTTTCT ACTAATTAGC TTGTAACTCC CTACTTATTG AAATAAAGGG 119427 .......... .......... .......... .......... .......... .......... 727 TTACAGAAAA ATGAAAATTA AGATAATTTG GAAAATTAAG AAAGGAACGA ATATCAATCG 119367 .......... .......... .......... .......... .......... .......... 727 TTATATTACA TTTTGGTTAT GTTTATATAT TTTTATCACA ACCCATTCAA AATCATAACA 119307 .......... .......... .......... .......... .......... .......... 727 TAAAGATGAC ATTATAAAAT TTTCATTTTC TTTATTAATC AACAAAGATA AGTTACTGTT 119247 .......... .......... .......... .......... .......... .......... 727 TATACTCAAT CAATATCAGG AACATGCAGA AATTAAGTTG GCTAGAACAT CATGAAAAAA 119187 .......... .......... .......... .......... .......... .......... 727 CATAACTTGA TGCAATTTCA TAACTCAAGA GGAATTATTT TTCAAGTTTT ATCACTTATA 119127 .......... .......... .......... .......... .......... .......... 727 AAAAACAAAA AAAATTAATT TTGTTCATCA AATATTCTAA ATTTCACACG TGACATTCAA 119067 .......... .......... .......... .......... .......... .......... 727 CCTAACATGT ATCTGCACGT ATAAAAATTC GACAAGAAAT GATTTAACAA AAACA-AAAA 119008 |||| ||||| | | .......... .......... .......... .......... ......ACAA AAACATATAT 741 ATTCTTACCT GTAAGTATTC AAAAGTATAA ATTCTAATAG AACAAATATG TACTAAGAAT 118948 |||||| || ATTCTTGCCA .......... .......... .......... .......... .......... 751 GAAAAATTAA ATTAAATCAA ATTGGACTAA AGTAAGAAGT ACCATGATCT TTACTTATAT 118888 .......... .......... .......... .......... .......... .......... 751 CAACCTGAAA ATTATATTCA CTCGTCGTTC TTCTAAAATC TTAATTTTAT ATATATATAT 118828 | .......... .......... .......... .......... .......... .........T 752 ATATATATAT ATTATAGTAA TTTAACATTC ATATTAAT 118790 | | |||| ||||| | || | | |||| | || ||||| ACACTTATA- ATTAT-GCAA TAT-ACATAC ATTTTAAT 787 hqPGS_C01HBa0216G16.1-_SGN-U315404- (123539 123390,123235 123095,122824 122781,122114 122022,119944 119937,119020 118998,118828 118790) ******************************************************************************** EST sequence 29 +strand 890 n (File: SGN-U335137+) 1 AGAGCTGGAG CTCCCCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GGAAAAACAT ATATCTTATT GCTATACACT TATAATTATG CAATATACAT ACATTTTAAT 121 TCGGTTCAAT TATATGCAAA GCAAATTTTA TAATAATATT GCAGCGAAAT AGGCAGCGAA 181 TTATACAATT GTAGTTAAAT AGGATAGCGA ATTATACAAT TGCAGCGAAA TAGGCCAGCG 241 AATTATACAA TTTAGGTCAG CGAATTATAC AATTTTATGT TTGCTATGGA GCGCAATTAT 301 GCAAACTTTG TTATAGCATA CAAATATGAA TTTTTTGTTT GTTATATGTG AAAGTTGCCC 361 ATTAATTAAA GAGTCAATAA AATAGCGGTC TAATCAAGTC CTAAGCAGCC CAAGGTTTGA 421 CCCGTCAACC CAAAAATGAA TAATATTATG GGAAAAGGGT ATGATATACC CCTCAACTTT 481 GTCATTTGAA ACTGATATAC CCCTCGTTAT GAAAGTGGCT CATATATACC CTTACCGTTA 541 TACAAATGGT TCACATATAC CTCTGCCGTT ACAAAATGAG CTCATATATA CCCTTCATTT 601 AACGAAAGTG AAAAAATTAC TTTTAAATTT ATAATTTTAC TTTAATTTTA AAAAAAAATA 661 TATTTAGGGG CATATATGAT TCTTTTTTCA AAGTTCAAGG TATATTTCAA ATTTTTTTAA 721 TACATAAATT ATTTTTTTGA CTTATTTATT ATAATTATTT GAGTTNATTA ATCTTGTTTT 781 TTTTCTTNCA TTCCCNTAGT GTAAGAAAAA AATTTAAAAC ATTTTTTATG TCTATATGGA 841 ATTTAATTTT TGGTATCGAA GAAAAGAATG GTCATNCTAC ATAGTTTTAC Predicted gene structure (within gDNA segment 126869 to 116181): Exon 1 125918 125828 ( 91 n); cDNA 138 225 ( 88 n); score: 0.637 Intron 1 125827 123918 (1910 n); Pd: 0.000 (s: 0.68), Pa: 0.790 (s: 0) Exon 2 123917 123893 ( 25 n); cDNA 226 250 ( 25 n); score: 0.640 Intron 2 123892 122803 (1090 n); Pd: 0.000 (s: 0), Pa: 0.070 (s: 0.84) Exon 3 122802 122691 ( 112 n); cDNA 251 360 ( 110 n); score: 0.911 MATCH C01HBa0216G16.1- SGN-U335137+ 0.788 228 0.256 C PGS_C01HBa0216G16.1-_SGN-U335137+ (125918 125828,123917 123893,122802 122691) Alignment (genomic DNA sequence = upper lines): AAATAAAATA TATTAATTAT TTTGAAATCT AATGAGTTTA TCAAATTATT CAAATGTAAT 125859 ||| |||| | |||| || ||| | | || || | | |||||| ||| |||| | AAAGCAAATT TTATAATAAT ATTG-CAGCG AAATAGG-CA GCGAATTATA CAATTGTAGT 195 AAAATATTAA GATATAATTT TAAGATTGAA GAGAGTTAAA CTAATAGTAG TAAAAAAAAG 125799 ||||| | | |||| || |||| | | TAAATA-GGA TAGCGAATTA TACAATTGCA G......... .......... .......... 225 AGGTAGAATC GTTGTAAAAA ATGACATTGA AAGTGAGAAG GTTCAATGAC GATGACAAGG 125739 .......... .......... .......... .......... .......... .......... 225 AATTTTTAAA AAAGGACAAA AGAAAAGAAA AAATAATAAG GAAAAAAGTA AAAATTAATA 125679 .......... .......... .......... .......... .......... .......... 225 AGAAAAATAA GAAGATATAT CTTATAGCAA AATACTTGTA AACATAAAAT TATATTTGTT 125619 .......... .......... .......... .......... .......... .......... 225 TTTTTAGTTT GTTCATGTTT TTTAAAAGAG TGCATACGCT CTCCATGTCA CGTGGACAAA 125559 .......... .......... .......... .......... .......... .......... 225 AAATGATATA ATAATATCAG ATCAAGATTG TTTAGAGGGG TAATATGACA CTTGCATAGT 125499 .......... .......... .......... .......... .......... .......... 225 TTAGGTGTCT TTAAAATTTT TGGGACAACT TCAAGTGTCA CTTATGTATT TTTCTCATAC 125439 .......... .......... .......... .......... .......... .......... 225 AATAACTAAG AATTTGTGCC AATAAAATAT AAAAGTTTGA AACTTAAGTC AAAATTTTAT 125379 .......... .......... .......... .......... .......... .......... 225 ACACCAAAGA ATATAATTAC AATTTTTTAA ACTTACTATT GAATTATAAT TTAATCTATT 125319 .......... .......... .......... .......... .......... .......... 225 AAGAAATCTA AATAATTGTA AAATTGATAA CTCAATAAAA TAATCTAATA TCTAGATCAT 125259 .......... .......... .......... .......... .......... .......... 225 TATTAAAAGA AGAGCAAGTT TCATATATAA CAAACACAAA AATTATATTT GTATGTTATT 125199 .......... .......... .......... .......... .......... .......... 225 ACTATAGTTT GCATAATCAC GCTCCAAAGC AAACTTTCTA TATGATATGG TCATTTCACT 125139 .......... .......... .......... .......... .......... .......... 225 ATACATATAT ACAAAATAAG TTATGACTAT TTCATTATAT ATATATATAT ATATATATAT 125079 .......... .......... .......... .......... .......... .......... 225 ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATAGCAATTG TATGATCTGT 125019 .......... .......... .......... .......... .......... .......... 225 TTTGGTATAC ATATACAAAA GAATCAGTTG TATAATTTGT GTTTGTATAA AGTGATAAAG 124959 .......... .......... .......... .......... .......... .......... 225 AGAGAGAAAC AAAAGAAAAC TGGGCAGTGG AAGATCATAT TTGTATAATC GTAAGTGTAT 124899 .......... .......... .......... .......... .......... .......... 225 ATAATGAAAA TATATGCATA TATATTTATA TATACAATTT TCTCTCGCTT TATACAAACA 124839 .......... .......... .......... .......... .......... .......... 225 CAAACACAAA CGCAATGTAT AAATTTGTGT TTGTATAAAG TGAAAGAGGT GAGTGAGAGT 124779 .......... .......... .......... .......... .......... .......... 225 AGCGAGCAAG ATCTGGGAGA GGGGAGAAAG GGGGAACGAA AATGTATGTA TATATACAAT 124719 .......... .......... .......... .......... .......... .......... 225 TTTCTGTCGC TTTATACAAA TACAAACACA TTTTATACAT TTGTATTTGT ATAAAATCAA 124659 .......... .......... .......... .......... .......... .......... 225 GAGAAGCGAG TGAGACTACC TAGCGAGAAC AAGAGTGGCG AATGAAATTC ACCAAGGAGA 124599 .......... .......... .......... .......... .......... .......... 225 GAGGCAAAAT AATAACAGTT TGCTACGGGG TACAACTAAT CAAACTATGG TCATAACATT 124539 .......... .......... .......... .......... .......... .......... 225 TAATTTGAAT TAACACTTTG CTATTATATA TATAATTTTC CCTTAAAAGC ATAACTCATT 124479 .......... .......... .......... .......... .......... .......... 225 TGTAATGACA CAGAAGGTCA TTTTTGAAAA TTTTCACAAA ATTGTCATTT TACCCCTCTC 124419 .......... .......... .......... .......... .......... .......... 225 AATAGTTTCC TCGAGTAATT TTTGACTTGT TCGTGAAGTT GATTTGAGGA TTTTAAACTA 124359 .......... .......... .......... .......... .......... .......... 225 TTTGATAACT TCGATTATTT AGTTGGTGGT ATTTATTAAA GAGTAACTTT CACAAATAGC 124299 .......... .......... .......... .......... .......... .......... 225 AAACATAAAA ATCATATTTG TAAGCTATAG CTATACTTTT CATAATTGTT CTCCATAGCA 124239 .......... .......... .......... .......... .......... .......... 225 AACATAAATA TGTATATTTC TCTATACATA TACAAAAAAA ACAATTGTAG AATTCGCTAC 124179 .......... .......... .......... .......... .......... .......... 225 ACATATATAA AAAAATAGTT GTATAATTCG CTATACATAT ACAAAAGAAA GTAGTTGCAT 124119 .......... .......... .......... .......... .......... .......... 225 ACAAAATATC AATTGTATAA TTTGTGTATG TAGAAAACGA GAAAGATAGA AAGACAAAAG 124059 .......... .......... .......... .......... .......... .......... 225 AAAATCGGGC AGGAAAATAT TTGTATTGTA TACTTATAAG TGTATATGAT GAAGATATAA 123999 .......... .......... .......... .......... .......... .......... 225 TATTTGTATG TGTATATACA ACTTTTCCTC ATTTTGCACA ACAGAAACAC AATTTATTCA 123939 .......... .......... .......... .......... .......... .......... 225 CTCCGTTTCT GTTTGTATAA GCGAGAAAGG CGAGAGTAAC ATGCGAGATC GGGGAGAGGG 123879 ||| | ||| | || | | || | | .......... .......... .CGAAATAGG CCAGCGAATT ATACAA.... .......... 250 GAGAAAGGGG AATGAAAATA TATCTATATA TACAATTTCT CCCGCTTTAT ACAAACACAA 123819 .......... .......... .......... .......... .......... .......... 250 ACACATTTTA TACATTTGTT TTTGTATAAA ATCGAAAGGG GACAAGTGAG AGAGGGAGAG 123759 .......... .......... .......... .......... .......... .......... 250 TGGCGAGCAA GAGTTTGAGG GAAAGAAGTG ACCGGAAAAC AGTTTGCTAC AAGACACAAT 123699 .......... .......... .......... .......... .......... .......... 250 TAAATCAAAG TGTGTTATAG CATTTAATTT GAATTATTAG TTTATCATTA TATACAATTT 123639 .......... .......... .......... .......... .......... .......... 250 TTCCTTTATT AAATCATTTA TCTATTTAGT TGGTGGTAAA TAAGCTAACC CATAATTTTT 123579 .......... .......... .......... .......... .......... .......... 250 GTTTAATACC CTTGCCATGT AGTCCATGTA TAAAAAAGGG GGAAAATCGT ATATAATAGC 123519 .......... .......... .......... .......... .......... .......... 250 AAACTGATAA CCTAAAATAA ATGGAGTATC CAGGGTTTGA TTTATTTGTG CTCCATAGCA 123459 .......... .......... .......... .......... .......... .......... 250 AACGTTTGCC AAAAATTGTC AGGCGCCTCT CTCCCGAATA TCTCGCTTGC CACTCTCCTC 123399 .......... .......... .......... .......... .......... .......... 250 CAATCTCTCG CTCGCTTCCT CACATTTCAT ACAAACACAA TTGTATAAAA ATTATTTCTA 123339 .......... .......... .......... .......... .......... .......... 250 ATTGTATAAA GTAGAGAAAA TTGTATAAAT ACATATATTT TTGTTCCCCT CTCTCCCCTC 123279 .......... .......... .......... .......... .......... .......... 250 TTCCAGATTC GCTCGCCACT CTCCCGAATC TCGCTTGCCG CCCTCGTCTT TCTCACTTAT 123219 .......... .......... .......... .......... .......... .......... 250 ACAAACAGAC ACGAAATGTA TAAATTGCAT TTATGTTTGT ATAAAGCGTG AGAAAATTAT 123159 .......... .......... .......... .......... .......... .......... 250 ACATACACAT GCAAGTACAT ATATTTTCGT CCTATACACT TATAATTATA CAATAAAAAT 123099 .......... .......... .......... .......... .......... .......... 250 ACTTCTCTGC CCAGTTTCTT TTGCCTTTCT CTCTTTTTCT TTTTATACAA CTTTCAAATT 123039 .......... .......... .......... .......... .......... .......... 250 GTATCTAATT CCTCTCTTTC TCGTTTTATA CAATTCGATT CAATTGTACA TTCCTTGTCA 122979 .......... .......... .......... .......... .......... .......... 250 AGTCTCTTTT GTCTTTCTCT CTTTCTCATG TTATACAGAT TCAAATTGTA TAAAATCATT 122919 .......... .......... .......... .......... .......... .......... 250 CTATACACTT ATAATAATAC AATTCTTTTT ATACACTTCG TTTTATATAG TTCTCTGTCC 122859 .......... .......... .......... .......... .......... .......... 250 AAATGTCTTT CTCTTTCTTG TTTTATACAC TTCGTTTTAT ACAATTTGCT TCACAGTATA 122799 | || .......... .......... .......... .......... .......... ......TTTA 254 TGTATAGCGA ATTATACAGT TTCTATGTTT GCTAGGGAAC GCAATTATGC AAACTTTGTT 122739 || ||||| |||||||| | || ||||||| |||| ||| | |||||||||| |||||||||| GGT-CAGCGA ATTATACAAT TT-TATGTTT GCTATGGAGC GCAATTATGC AAACTTTGTT 312 ATAGCATACA AATATGAATT TTTTATTTGA TATATGTGAA AGTTGCCC 122691 |||||||||| |||||||||| |||| |||| |||||||||| |||||||| ATAGCATACA AATATGAATT TTTTGTTTGT TATATGTGAA AGTTGCCC 360 hqPGS_C01HBa0216G16.1-_SGN-U335137+ (122802 122691) ******************************************************************************** EST sequence 25 +strand 951 n (File: SGN-U343309+) 1 AGGGGAAAGA ATGGTTTTTT TCTTGGNNNA ACTAAACGTG GTGNTTAACC CCCACTACTT 61 GGCGGCCGCT ATAGCACTAG TGGATCCCCC GGGCTGCAGG TATTCGGCAC GAGGGTATCC 121 TTTTCTCTTA ACTCTCACCT TCTTCTTTCC CACCGTTTCT TTCTCAGCTT AAATATTTCT 181 CTTCTTTTCT TTTTCTCCCT TTGCTTGCTT CTCTTTATCT CCTCTCCTTC AAGATGGCAG 241 ATAACAACAC CACAACTCAA GATTTTGATG GTTCCTCTCA GACTACTTCT ACTGGTAACA 301 AATATGGAGG ACTTGCTCCA AAGAAGAAGC CTTTGATTTC AAATGATCAT GAACGTGCCT 361 TTTTAGACTC CGCAGACTGG GCTCTATGCA AGCAAGGTGC AGGAGTTGAT CAAAAATCAA 421 CGGTGGCTAT AGAAACATTG CGTCCCAAAT TACAGAGAAC AACTCATCAA CAATTGCCTC 481 CTAGAAGACC TGCTTGTACA TCTTGATTCA CATGTGGTAC CTTCAAAATG CTGATTTTGT 541 TATGTTATTT GCTGGCTAAG TAGACATAAT ATGTCACTAT AAATACATGG TTCTTTTCTT 601 CGATATGGGA CTTGGATGTA ATCACCAATA ACTCTTTAAG AACTTTTGTT GCTTAAGCAT 661 TTATAAATTA TTATTTCCCA AAAAAAAAAA AAAAAAAAAA CTCGAGGGGG GGNCCCGGTA 721 CCCAATTCGC CCTATAGTGA GTCGTATTAC AATTCACTGG GCCGTCGTTT TACAACGTCG 781 TGACTGGGAA AACCCTGGCG TTACCCAACT TAATCGCCTT GCAGCACATC CCCCTTTCGC 841 CAGCTGGCGT AATAGCGAAG AGGCCCGCAC CGATCGCCCT TCCCACAGTT GCCCAGCCTG 901 AATGGCGAAT GGCAAAATGT AAAGCGTAAA TATTTGTTAA AATTCGCGTT A Predicted gene structure (within gDNA segment 133522 to 125898): Exon 1 131781 131664 ( 118 n); cDNA 116 233 ( 118 n); score: 1.000 Intron 1 131663 131532 ( 132 n); Pd: 0.999 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 131531 131484 ( 48 n); cDNA 234 281 ( 48 n); score: 1.000 Intron 2 131483 129978 (1506 n); Pd: 1.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 129977 129915 ( 63 n); cDNA 282 344 ( 63 n); score: 0.984 Intron 3 129914 129838 ( 77 n); Pd: 1.000 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 4 129837 129790 ( 48 n); cDNA 345 392 ( 48 n); score: 0.979 Intron 4 129789 129643 ( 147 n); Pd: 0.986 (s: 0.98), Pa: 0.995 (s: 1.00) Exon 5 129642 129580 ( 63 n); cDNA 393 455 ( 63 n); score: 1.000 Intron 5 129579 129443 ( 137 n); Pd: 0.995 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 6 129442 129218 ( 225 n); cDNA 456 680 ( 225 n); score: 1.000 Intron 6 129217 128322 ( 896 n); Pd: 0.000 (s: 1.00), Pa: 0.813 (s: 0) Exon 7 128321 128311 ( 11 n); cDNA 681 691 ( 11 n); score: 0.727 MATCH C01HBa0216G16.1- SGN-U343309+ 0.998 576 0.606 C PGS_C01HBa0216G16.1-_SGN-U343309+ (131781 131664,131531 131484,129977 129915,129837 129790,129642 129580,129442 129218,128321 128311) Alignment (genomic DNA sequence = upper lines): TATCCTTTTC TCTTAACTCT CACCTTCTTC TTTCCCACCG TTTCTTTCTC AGCTTAAATA 131722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTTTTC TCTTAACTCT CACCTTCTTC TTTCCCACCG TTTCTTTCTC AGCTTAAATA 175 TTTCTCTTCT TTTCTTTTTC TCCCTTTGCT TGCTTCTCTT TATCTCCTCT CCTTCAAGGT 131662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTCTCTTCT TTTCTTTTTC TCCCTTTGCT TGCTTCTCTT TATCTCCTCT CCTTCAAG.. 233 ACTTCAATAT TCCTTTTTCT ATATATATTT TATTATTTGG AGCTCTACTC TAATTTTATT 131602 .......... .......... .......... .......... .......... .......... 233 ACTCTTTCTA TTTTTCTATA CACTTATTAT AAATATAGTG AGATTAATTA ATTAATTAAT 131542 .......... .......... .......... .......... .......... .......... 233 TGCTCATCAG ATGGCAGATA ACAACACCAC AACTCAAGAT TTTGATGGTT CCTCTCAGGT 131482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| .......... ATGGCAGATA ACAACACCAC AACTCAAGAT TTTGATGGTT CCTCTCAG.. 281 ACTAATTCAA ATTATATTAT TAATTATTAT TATTTCTGCT AAATTCTTTG GGTAATGAAC 131422 .......... .......... .......... .......... .......... .......... 281 ATTTTTTCTT TTTACATGTC GGCCGGTGCA ATTTATTATT TTTTCACACT TTTTTCTTTT 131362 .......... .......... .......... .......... .......... .......... 281 TGAATCCGTT TCTTAATTGG TGTCACTTTT TAACTCTTTA TTGTGGAAAT ACTAAAGTGA 131302 .......... .......... .......... .......... .......... .......... 281 TTTACCAAAT TGTAATTTGG TAAACGTAAT CATTTAGTCT TATTTTTTAA ATTTTATGTC 131242 .......... .......... .......... .......... .......... .......... 281 CGATCAAATA ATGTCATCGG AGAAAATATC CTCTCTAATT CTCAGGTGTA CTATGTGTAT 131182 .......... .......... .......... .......... .......... .......... 281 AAAGGTTTAC AAAGCATTAC AACTCAACTC TTTTAACTTA TTTAAAACTG AAATATATTA 131122 .......... .......... .......... .......... .......... .......... 281 AATCCCTTCA AGGTCCATTA ATAAGGAAAT AACTTTTTTT ACCCTCCTAC AAAATTTTGT 131062 .......... .......... .......... .......... .......... .......... 281 GTGTGAAAGT GAAAATTTCT CATAGAAAAA ATAAATTATA TAAGAATATT GTTCGCTCTT 131002 .......... .......... .......... .......... .......... .......... 281 TTATAATTTA AATAGAAGAA AATAACTTAT TTTTTATGCT CAAAAAGTAA AAATTTTTTA 130942 .......... .......... .......... .......... .......... .......... 281 TTAAAAAAAT AAAATAAAAA ATGGCTGACA CATCACACAT ATACTTGGGT CACAAAAGAT 130882 .......... .......... .......... .......... .......... .......... 281 TCCTATAGCT AGGGAACAGT TGGGTTTTAA TTTACTGTTT ATGAAACTCA ATTAGATGCT 130822 .......... .......... .......... .......... .......... .......... 281 TCCAAATCCT AGCTTGTGTG TTATTGGAAC CTGACATTAT TTTTATCATT TGCATTAGCA 130762 .......... .......... .......... .......... .......... .......... 281 TTAAGGACCA ATTATATTCT TGGTTCGATA TGATTTTCTT TGTAATTTTA GTAATGTGGT 130702 .......... .......... .......... .......... .......... .......... 281 CCAAAGAAAA TATCTTGAGA CGTTATTTTT TTTTAAAAAA AGAAGAAAAA TAAGCATAAA 130642 .......... .......... .......... .......... .......... .......... 281 TATGATGTAG ATTGTGGGGT TGAAGGGACG AAGCAATCAC GTGCAACCTG CCGTAGGGGA 130582 .......... .......... .......... .......... .......... .......... 281 TCACAAAAGA GTGGTATATG CTTTTTGATT TAGATTTATG TATGTAAACA TTTGAGCCAC 130522 .......... .......... .......... .......... .......... .......... 281 TCATACTTTA GATTCAATTA TTATTCAAAA AGGTGTCGGC ACTAAATTAA CAAACTTGAT 130462 .......... .......... .......... .......... .......... .......... 281 TAGGATATTT ACTCAAATTA ACTTAGTTTT AATCAGAAGA TTTCTTTTTA TTAATAATGA 130402 .......... .......... .......... .......... .......... .......... 281 ATTATCATAT TACAAATATT TAAAAAGTTG GACCCATAAG TTTATGCTGT GAATTATACT 130342 .......... .......... .......... .......... .......... .......... 281 TGCTTGTGAA AAAAGAAATT TATTTGGTCC TCTATAGTAC TAACTATAGT ATTTAAGAAG 130282 .......... .......... .......... .......... .......... .......... 281 TTTGAAAATA ATATTTTAAC TTTACAGAAA TTTGGTCAAT AAGCTACATT AATCAGAATA 130222 .......... .......... .......... .......... .......... .......... 281 TAGAGTTTGG AAAATACAAA TTAAATTATC ACATGGGATT CTGTGCTTGG TCCCCATTGA 130162 .......... .......... .......... .......... .......... .......... 281 ACTTTTATTG TTTAAATTTG TTCCTTGATA TGTCAAATCA AGTCAAATGT TAGGCAAAAG 130102 .......... .......... .......... .......... .......... .......... 281 GAGTAGATAG TTATATGTTT AATTAATTTA TGTAGAGTTA GTTAGGTGTC TAATATTGAA 130042 .......... .......... .......... .......... .......... .......... 281 TTTAGTTGCA AGTTGTTTTT TGACTCAACC TTTGATTGTT TGGTATAATT ACAAACTTCT 129982 .......... .......... .......... .......... .......... .......... 281 GTAGACTACT TCTACTGGTA ACAAATATGG AGGACTTGCT CCAAAGAAGA AGCCTTTGAT 129922 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ACTACT TCTACTGGTA ACAAATATGG AGGACTTGCT CCAAAGAAGA AGCCTTTGAT 337 TTCAAAGGCA AGTCTTATAT TATTTTTTTA TCTTAATTTT ATAAAACTTA TATAAACAAA 129862 |||||| TTCAAAT... .......... .......... .......... .......... .......... 344 TTAATTTATA TAATGTTGTT ACAGGATCAT GAACGTGCCT TTTTTGACTC CGCAGACTGG 129802 |||||| |||||||||| |||| ||||| |||||||||| .......... .......... ....GATCAT GAACGTGCCT TTTTAGACTC CGCAGACTGG 380 GCTCTATGCA AGGTAGACAT AAATTAACGT GCAAGTTACA CAGTTAGTAG GAAAAAAATT 129742 |||||||||| || GCTCTATGCA AG........ .......... .......... .......... .......... 392 ATATTCGCTA GTCAAATAAA TTATTTCGAT GAATGACTAT TTAACTCGAA TATCCTTTTG 129682 .......... .......... .......... .......... .......... .......... 392 AACTTCTTTT CAATGTTGGT ACTTTTCATA TGAATACAGC AAGGTGCAGG AGTTGATCAA 129622 | |||||||||| |||||||||| .......... .......... .......... .........C AAGGTGCAGG AGTTGATCAA 413 AAATCAACGG TGGCTATAGA AACATTGCGT CCCAAATTAC AGGTAACTGG AACCCTTGAA 129562 |||||||||| |||||||||| |||||||||| |||||||||| || AAATCAACGG TGGCTATAGA AACATTGCGT CCCAAATTAC AG........ .......... 455 AAAACTATGA ATCAACTTTT TTTTTATATA AAAAAAAATA TTACTCTAAT TTATTATTGT 129502 .......... .......... .......... .......... .......... .......... 455 TATTATTATT TTTATGAACT TCATTTACTA GTGAGAATAT ATTATTTGAA ATGAAACAGA 129442 | .......... .......... .......... .......... .......... .........A 456 GAACAACTCA TCAACAATTG CCTCCTAGAA GACCTGCTTG TACATCTTGA TTCACATGTG 129382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAACTCA TCAACAATTG CCTCCTAGAA GACCTGCTTG TACATCTTGA TTCACATGTG 516 GTACCTTCAA AATGCTGATT TTGTTATGTT ATTTGCTGGC TAAGTAGACA TAATATGTCA 129322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCTTCAA AATGCTGATT TTGTTATGTT ATTTGCTGGC TAAGTAGACA TAATATGTCA 576 CTATAAATAC ATGGTTCTTT TCTTCGATAT GGGACTTGGA TGTAATCACC AATAACTCTT 129262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATAAATAC ATGGTTCTTT TCTTCGATAT GGGACTTGGA TGTAATCACC AATAACTCTT 636 TAAGAACTTT TGTTGCTTAA GCATTTATAA ATTATTATTT CCCACTTTTC ATAGTCTCTA 129202 |||||||||| |||||||||| |||||||||| |||||||||| |||| TAAGAACTTT TGTTGCTTAA GCATTTATAA ATTATTATTT CCCA...... .......... 680 AATGTATCTT TTTTTAAAAA AAATTATTTT CTAGTAAAAG TAGTTTCTAA CGGTGGGATG 129142 .......... .......... .......... .......... .......... .......... 680 TCATGATAAA AAAAAATCGT GATATTTTGA GTGTTGCGAT ATTCATATCT TTTATACAAT 129082 .......... .......... .......... .......... .......... .......... 680 AATAAAAAAT ATGTGAAATA TTGTTTTTTT TTTTACATAT TCACGTATTT ATATCGGGCA 129022 .......... .......... .......... .......... .......... .......... 680 CCGTATTACC AGTAGTCTAG AGATTGATAT TTTGTTAAGT TAAAAAGAAA AATTGATTAG 128962 .......... .......... .......... .......... .......... .......... 680 AATGCCTTCC TTTCTTGTCT AGAGAATGAT ATTTTGTTAA GTTAAAAAAA AATTGATTAG 128902 .......... .......... .......... .......... .......... .......... 680 AATGCCTTCC TTTCTTTTAG AGTATTGTTT TTAGTCAATA GGACGGTCTC GAAAACTTTT 128842 .......... .......... .......... .......... .......... .......... 680 ATTATGGTAG AAGCCTAATC AACAAAAGGT GTGAGACTAT ATTATTTTTT TGACACTTGT 128782 .......... .......... .......... .......... .......... .......... 680 ATAAGTAGGT CATTTATGTA CTTTTCTACT TTAAAGTAAG AACTTTCTAC AATTAGAGAG 128722 .......... .......... .......... .......... .......... .......... 680 AATATATTTA TGCATAAATT GAGTTGAACA AATATAAAAA AAAATGCAAG AAAAATTATG 128662 .......... .......... .......... .......... .......... .......... 680 TGTGTTTGCT ACTTTTTTTT AATCATTATT AATATTATAC TAATGCATAA ATTGAGTTGA 128602 .......... .......... .......... .......... .......... .......... 680 ACAAATATAA AAAAAAAATG CAAGAAAAAT TATGTGTGTT TGCTACTTTT TTTTAATCAT 128542 .......... .......... .......... .......... .......... .......... 680 TATTAATATT ATACTAATTT TTGAATTATA TTCGAAATAT TATTGTCATT ATAGTTGTAC 128482 .......... .......... .......... .......... .......... .......... 680 GTAAGTTTGA CAAATTTATT TCGATATGAT TATTTTTGTG TATTCATTTT GTGTTAAAAT 128422 .......... .......... .......... .......... .......... .......... 680 TCTTTCATAA TTATTGTGAT TTTAAAATGT AGTTACTTTA TTTTAATTGT ACCATCTGAA 128362 .......... .......... .......... .......... .......... .......... 680 ATGTCGATTG TTACATTATT TTTAAATTAA ACTTTTGAAG GAAAGTAAAA A 128311 ||| |||| | .......... .......... .......... .......... AAAAAAAAAA A 691 hqPGS_C01HBa0216G16.1-_SGN-U343309+ (131781 131664,131531 131484,129977 129915,129837 129790,129642 129580,129442 129218) ******************************************************************************** EST sequence 23 +strand 1598 n (File: SGN-U313022+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 601 GCTTTTGGGG TGTGAGTTAG GCCTAAGACC TAATTTCACA ACATCCAAGT TACAATAATG 661 AGATAATACA ATTTTCAAGG GATCAATGAT TGGTTAATTC TTCCTTTTGT TCTTTTTTTA 721 GCATTTCATT ATTGTTTTCC CTTTGGATCT TATATAATTA TGTTAAGGAG GACGGAAATA 781 TGCTTTCTTC ATGGCTTGTC AAATATGATT AATTGCCAAA TCTAGTAGTC TTGAGCTCAA 841 ATAATCATAT TTTACACTTG AGAAAAGAAA TGTACATAAT TTGGACTATT CTTGTGAAGG 901 ACACTGATTC TGAGGAAGAA CTCAAAGAGG CTTTTAAGGT TTTTGATAAA GATCAGAATG 961 GCTTTATTTC TGCAGCTGAG GTACTTTTCT TATTTTTTGC AAGTGATTAT GTGGGAAGTG 1021 TTATTTAACA TGCTAATAGT TTTTTTGGCA GCCAGTATTA TGGACTGCCA ATTCCTGTGT 1081 CTTATGAGTG TACATTTAAC ATTTGCAGCT TCGTCATGTA ATGACAAACC TTGGAGAGAA 1141 GCTGACTGAT GAAGAGGTGG ATGAGATGAT CCGAGAGGCA GATATTGATG GTGATGGACA 1201 AGTTAATTAT GAGGAGTTTG TCCGTATGAT GCTTGCCAAG TGATGACTTT AAGATTCTGT 1261 TAGCTACTAT GTAATCTATG ATAGCTGCTC AGTTAGTTAC TACAACTTAT AGCTGGCAGA 1321 CTCAGGAGCG GTTCAAGTAT ATTAGTGGCC TAAAGCGGCT CCTTAAACTT GAATTGTTAA 1381 TAACTTTTGT ATAACTGATT TCTTCTAGTT TTACCTGCAA AAAAAAAAAT TTCAGTTTCA 1441 TGTTAACTTA TGGTGTATGC TGCTTTAGTC CCTTGCCCCA TCCAGAGGGT AAAAGAAAAG 1501 GAGAAATTAG ATAGTTCATT GGTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAACC 1561 CCGGGGGGGG GGCCGGGACC CCTTTCCCCC CTAAGGGG Predicted gene structure (within gDNA segment 148441 to 133439): Exon 1 143041 142865 ( 177 n); cDNA 511 687 ( 177 n); score: 0.768 Intron 1 142864 135039 (7826 n); Pd: 0.000 (s: 0.56), Pa: 0.971 (s: 0) Exon 2 135038 135032 ( 7 n); cDNA 688 694 ( 7 n); score: 1.000 PPA cDNA 1548 1559 MATCH C01HBa0216G16.1- SGN-U313022+ 0.768 184 0.115 C PGS_C01HBa0216G16.1-_SGN-U313022+ (143041 142865,135038 135032) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TAAAAAAAAT CTCAAATTGG TGGTTAATGA GATGGGTGGA CTACTTATAA 142982 |||||||||| | | |||| | | || || || | ||||||| |||||||||| || |||||| TGTTAAAGAA TGATAAAAGT CCCACATCGG TAATTAATGA GATGGGTGGA CTCTTTATAA 570 GGCTTGGACA ATCCTCCTCC CTTTGAGATA GCATTCAAAG TTTGAGTTAG GCCTAAAACC 142922 |||||||||| |||||||||| ||||||| || || || | | |||||||| |||||| ||| GGCTTGGACA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCCTAAGACC 630 TAATCTAACA TACA-CAATG ACATAAAAAG GAAAATGATA GACTTTTC-A TCTATCAATA 142864 |||| | ||| ||| | | | | || || | | || ||| | ||||| | |||||| TAATTTCACA -ACATCCAAG TTACAATAAT G-AGATAATA CAATTTTCAA GGGATCAAT. 687 CTTAAGTTCA ATAGGCTAAT AAAAGATCAA ATGGTGGATG AACAACAACC TGAAGATAAA 142804 .......... .......... .......... .......... .......... .......... 687 ATTGCTTTAT GTGTATATGT ATTCCTTGTT CCCTTTCAGA TTTAAATAAT ATGCGAATAT 142744 .......... .......... .......... .......... .......... .......... 687 AATTATGCAT TGTAAAAAAT AATTTATATT TGGATACAAC TCATATCTAA ACTACGGTGT 142684 .......... .......... .......... .......... .......... .......... 687 ATTTATTAAC TTTTCATTGA TTTTTATACG TAAGTTTTTT ATTAATTCTA ACTGTATGTC 142624 .......... .......... .......... .......... .......... .......... 687 ATCAAGTTTT GTTATATTAT CTTCATTTAC TTTTCATACT ATGACCTGAA AACAATTTTC 142564 .......... .......... .......... .......... .......... .......... 687 GTAGTTCATA ATATTGTTTC GTTGAGATTA TGTGGAATAC AACGTATTTA TATATCTCTT 142504 .......... .......... .......... .......... .......... .......... 687 CTATTTGTAT ACCTATTAGT TTTATATTTA TGTCATCAAA TTTTATTCAT CCTCAGAATA 142444 .......... .......... .......... .......... .......... .......... 687 AGATATAAAG TTAATAGTTC ATAATAGGAT CTAATTTGCA ACTAATCGTG TGGAATACAC 142384 .......... .......... .......... .......... .......... .......... 687 CATAATTTCA TTTAGATACA ACTTTTGTAG TACATAATAT TGTTTTGTGG GGATTATGTT 142324 .......... .......... .......... .......... .......... .......... 687 GAATATGACA TATTTCTTGG TATATTGTGT CTTATTTTGT ATTTATTCTA ATTGTATATC 142264 .......... .......... .......... .......... .......... .......... 687 CGCTAGTATT GTATTTTTGT CATCAAATTG TATAAAACCT CGACAATGGA TACAAAGTTA 142204 .......... .......... .......... .......... .......... .......... 687 GTAGTTCATA ATAGTATCTC TGTAGCTTAT TATATGGAAG ACAACATAAT TTTTGTTTGA 142144 .......... .......... .......... .......... .......... .......... 687 CTTTCTTTTT TATTTGCACT CATTCTAACT GTATGTCATC AAAAAAAATT GTATTCTATC 142084 .......... .......... .......... .......... .......... .......... 687 CTCACAATGT ATCTCAATAT TTCTATTTAA ACCTCAGTTT AAAATCATTT TGTTTTGTAT 142024 .......... .......... .......... .......... .......... .......... 687 TTATATTGTA AATATTGTTA GGTCTATTCA GTTATTATGT TTGTATTTAT TTTAAAATTA 141964 .......... .......... .......... .......... .......... .......... 687 ATATGTGTGA GTGTAGACAG TGAAATTTTA TTGATAAACT CATAATGAAC TTTGGATTAA 141904 .......... .......... .......... .......... .......... .......... 687 TTCATAAATT CATGATATAT TGACCAAGTC AAACTATTGA TTAATAAAGT CGAATTAATA 141844 .......... .......... .......... .......... .......... .......... 687 TTTAAGTCAA AATATATAAC TTAAATGAAC TCCAAATTAT ATATGGTCAG TCCATAAGTT 141784 .......... .......... .......... .......... .......... .......... 687 GAGAAGACAG GCCCAACTCA TGTTCTTTAA GCTCATGGGC TAAAATTGTT CAACGAAAAT 141724 .......... .......... .......... .......... .......... .......... 687 ACCTCTAAAA CTCTAGCTCA AGCCTATATA AAGAGGTCTT CATAAGACCA ATAGAATAAA 141664 .......... .......... .......... .......... .......... .......... 687 GAGAAGAAAA TAAGAATACA CACATTCATA CAGACATGAT CTTTGCTCCT CAGTGGTGAT 141604 .......... .......... .......... .......... .......... .......... 687 CTGCAAGTCT TTCGCATCCA AAGAAGTATT GGCTCCAAGT GTTGTTCCGC AAGTATTTCA 141544 .......... .......... .......... .......... .......... .......... 687 TCAAATCAAG AAAATCGGTG AAGAGAAAAA TCACGGTATT TTGTAACATT CACATAAAAT 141484 .......... .......... .......... .......... .......... .......... 687 TCAAATACAA ATATTGTTGT TCGTTTACTA TTCTCCTTTA TTGTTTATTG CATTTCAGGG 141424 .......... .......... .......... .......... .......... .......... 687 ACGAAACTTT AGACACTTAT GTTAAGTATT TTACATTAAA AAATACACAA AACAAGCTAG 141364 .......... .......... .......... .......... .......... .......... 687 AATCACAACA GTAATCTGAA CACAAGATGC AAGCTCGGTC TTGTTTTCTC CTTTAGAATG 141304 .......... .......... .......... .......... .......... .......... 687 TAACTAATGA GAGTATTTCA CTAATTTTAC CTTTTTTAAA ATATTATCTC GTTATTTTCT 141244 .......... .......... .......... .......... .......... .......... 687 CATTTCTATT ATTTACTTAT TATTTAAAAT AAAACTGTAA CGACCCAAAT CGTCATTATT 141184 .......... .......... .......... .......... .......... .......... 687 TAAGAAAAGC AAAATTTGAA AAAATTCTAG TCATTGTCTC GCTACAGCGG GATAGGTGAT 141124 .......... .......... .......... .......... .......... .......... 687 GTTGGTGCTG CAGCGGTAAC TTACTCATCT AAAGCGGGAT TGGCGAGGAA AATCCATTTT 141064 .......... .......... .......... .......... .......... .......... 687 TTTGAGAAAT CCTTATTTTT CCACCTTTCC AAAAATAACA CTATAGGTTG AAAATTACCC 141004 .......... .......... .......... .......... .......... .......... 687 TACAAACCCC TGAAACGTTA TTTCAAGTTA GGAAAAGGAG GAGAGGGAGC TTTCTAGCAT 140944 .......... .......... .......... .......... .......... .......... 687 GGATATGGAG GAATCTTGCA AAATTATGGC CAAATTCACC ATAGCGAATC TGGAAAAGCT 140884 .......... .......... .......... .......... .......... .......... 687 GGAAACAAAA TCAAAATTTT GTAAAAATTG TTTGACACCC TAAAAAGTTA GTTTTTTTTT 140824 .......... .......... .......... .......... .......... .......... 687 TATTTTTGAG AAGTTATGAA TCCATGTTTT CCATATAATA TATGAATTCA ACAGTATTAG 140764 .......... .......... .......... .......... .......... .......... 687 ATATGTGTAG ACCTTCGTAC ACCGAGTAAA TTCCATGGAA AGTTGCAATA ATTTAAGGTT 140704 .......... .......... .......... .......... .......... .......... 687 ATGGGGCTGG TGTTGTGTTG AGACAGTAAT CATCGACGTT CTTATTTGTG CTCTTAAATG 140644 .......... .......... .......... .......... .......... .......... 687 GGTTTCTTGT TAAGTTATGG TATAATTGTG ATAAAGAGTT GCAGTCAATG TAAATAAAAC 140584 .......... .......... .......... .......... .......... .......... 687 TAGTAACAAA ACTTGATGAA AAACTAGGAT TTGGACTTGT GTAATTTCGT AAGAAGAAAT 140524 .......... .......... .......... .......... .......... .......... 687 CGAGGGAAGC CATATGTCAT AAAGCATGCG ACAAGGTGAT GTTTCTTTTG TTTAATTGTC 140464 .......... .......... .......... .......... .......... .......... 687 CCCATTATTC TCGTAGTGGC TTTTGTACTT GTCAGACTAG GTCCTTGGGG ATTGGAAAAC 140404 .......... .......... .......... .......... .......... .......... 687 TATTTCGTAT AATTTAGTAA AGTGTATTTG AATGGGTTAA TTTTTAAACT TCCTTAACTT 140344 .......... .......... .......... .......... .......... .......... 687 GTCCTTCATT TTCCTTAAAT TCTAGCTGTT TTCTAGTTGT TGGGTTATAA GGGTCCTCCT 140284 .......... .......... .......... .......... .......... .......... 687 ATGTAGGTGT TAGAGTAGGT TCCCACACAG TATGGTTGGT TGGGTCGTGA CAAATTGGTA 140224 .......... .......... .......... .......... .......... .......... 687 TTAGATCCTA GGTTAACGGT CTTCATGTAC AAGCAAAAAA ATGTGGACTA GACTCTTGTG 140164 .......... .......... .......... .......... .......... .......... 687 GATCGATGTG TTGACGTCCA CATCTAATCT ACAGGAGGCT GGGAAGAAGT TTAGGAAGTC 140104 .......... .......... .......... .......... .......... .......... 687 GTTTCAATCA TTTACTCCTT TCGAGCGAAG TGCCGCTCAT GGTATGGGTT AATTTCGATT 140044 .......... .......... .......... .......... .......... .......... 687 GGTATATCCC TATTACAATT GGTATTGAAA AGATGAGGAC TGGCGTTATT AGATGACTAA 139984 .......... .......... .......... .......... .......... .......... 687 AAGACACCAA CAAGATAAAT GGAAGCGGAA GGTTCCAATT GGTTTCTAGG CCTAGGGGTT 139924 .......... .......... .......... .......... .......... .......... 687 ATAAAAAGAA TAGATTATTG TTAAGGGCTA TCTATAGGAC GAACTAATTA ATAAACAAAA 139864 .......... .......... .......... .......... .......... .......... 687 ATATCATGTG TATTGTGTCT AGTAAATGAT GAATGTATGC TTCCTACTGG TTGTAACTAA 139804 .......... .......... .......... .......... .......... .......... 687 TTAGAATGTG TGTTTGTTGT TGTATTTATC TACTATTGTG TATTACGTGT TGAATGATGT 139744 .......... .......... .......... .......... .......... .......... 687 ATATCTAAAT ACAGAAGTGT GTCAATAGCT TGAATCATTT TTGAAATAGA GGAATGCAGT 139684 .......... .......... .......... .......... .......... .......... 687 TGGGGTGAGT AACCTTATTT AGGAAACAGT GTGGAGTGTC TGAAGTCGAT ATGAGTAGAG 139624 .......... .......... .......... .......... .......... .......... 687 TTATGGTTGG ATTGTTAAAA AGGTGTGCAG ATTGTATTGT CTAGGAAACA GTGTGGAGTG 139564 .......... .......... .......... .......... .......... .......... 687 TCTGAAGTCG ATATGAGTAG AGTTGTAGTG CCAAGCTACT TTTCTGCTTT AGAACTCGAA 139504 .......... .......... .......... .......... .......... .......... 687 CCTCAGATAT TTTAGTTGAA TAAATTGAGA AGCATAATAG GATAGTAAAA AGGGAGGTCG 139444 .......... .......... .......... .......... .......... .......... 687 AAAAATATTG GAAAGTGAAA AAGTTCCTAG AAAATCCTTA GTTAGGTTCT GTTCCTACCT 139384 .......... .......... .......... .......... .......... .......... 687 GTGCCACTAC GGTGGGATTA TTCCCGTTGG CACGGTGCAG CTACAGCGGT ATTTTCTCGC 139324 .......... .......... .......... .......... .......... .......... 687 TAAAGCGCGA CAAAGGGAAG GTGAACCTCA ACAGAATTTT TTTGTTTTTC CCAGTTTATA 139264 .......... .......... .......... .......... .......... .......... 687 ATATATAACC CAGAATGGAT CCAAGTTAAT CCTGCAACTC ATAATCTACT GTTAAACAGC 139204 .......... .......... .......... .......... .......... .......... 687 ACTAGTAATT AAAAGTGATT ATAATTAAAA ATGGGTTGCG TCAGATAGCC AAAAACAAGC 139144 .......... .......... .......... .......... .......... .......... 687 ATCCATGCGC TTTAAAATCT TAGTATTGTC AAAAGGAAGA ACATAAAAAT GTATATGTAT 139084 .......... .......... .......... .......... .......... .......... 687 TAGATATTCT TAATTACAAA CCAAAGAGGG GATGAGAAAG GGAAAACTGA TTAGGACTCT 139024 .......... .......... .......... .......... .......... .......... 687 GTGATGGGGT AAATTCGATG TCTGAGTCAA GTTGCTCCAG AGGTGTCACC CCGTACCAAG 138964 .......... .......... .......... .......... .......... .......... 687 CCTCATTCAA CATGTGAAAT TCCTTGAAAT CATCTGGATG GAGTCTAGGA AGAGGATGAG 138904 .......... .......... .......... .......... .......... .......... 687 TAGTAACAAT GCAGGTGAAT ATCGCCTTGA ACGTCTTTTA CGTCAGCATG ACACGATTTT 138844 .......... .......... .......... .......... .......... .......... 687 GAACCACACC TTTCCTCCTC TCCTTTCGCA AATAACGGCG ATGCATCTCA TACTCCAGAG 138784 .......... .......... .......... .......... .......... .......... 687 CAGTGTTGGG AGGGAACGGA TTAGGGTCAG TAGGAATGCT CCTCTCCGTC CCTGAACAGC 138724 .......... .......... .......... .......... .......... .......... 687 CGCTAAATCT TCCTCTACTC GTGCACCAAA AAGTGGGTCC TTCACGTCAG AACCTTTGGT 138664 .......... .......... .......... .......... .......... .......... 687 CTCACTACTG CTACTACCCA TGTTGGTCCT CCTTTTTTTT CCTATAGAAT TAGAACCTGA 138604 .......... .......... .......... .......... .......... .......... 687 CCGAACTAAA AGAGGGTAAA TAGGGGGAAT CCATAGGCAA TACCTCGTCA GCATCCAACA 138544 .......... .......... .......... .......... .......... .......... 687 AGGGCACCCC TGCCCGCTTA CATAGGGAAC TGACAAATGG GAAGAAAGAA TGTCTTTTTG 138484 .......... .......... .......... .......... .......... .......... 687 TTGCCCCAGT AGATAATCTT CCACTCGGAG ATAATTTGCG CCCCCAAAAT CAGCAGAATA 138424 .......... .......... .......... .......... .......... .......... 687 CCTTATATAT CACACACCAC CACCAGAGCC CGGGGGTAGG TAACATTGGT GCGGTTGCTC 138364 .......... .......... .......... .......... .......... .......... 687 GATGGGCAAA TCCTCCTAGA TACCAAGTGT AGCCACCACT TAGCATCAGG TGATCAGTCC 138304 .......... .......... .......... .......... .......... .......... 687 ATACTAGTGA GACCTTCGGT GATAGCCTAG TAAACTTGCG TCTTGCGAGA TCCGTAATAG 138244 .......... .......... .......... .......... .......... .......... 687 TGTCCTACAC ACTCAAAGTC AATCTCCCTA AGCTTCTCCT CAAACACCAG GTTTGGGACC 138184 .......... .......... .......... .......... .......... .......... 687 TCAGAGACCT CAAGCACTTC GTTGATAGTA GTGGAATTAA ATGGAAATTT CAACTCCCCG 138124 .......... .......... .......... .......... .......... .......... 687 AATGCGAATA ACTGGGTAAG GAACATCCCA GCGTACAGTG AGGAGGATAG CATAAAACTC 138064 .......... .......... .......... .......... .......... .......... 687 CCTCACCCAG GTAGAGGGGG AATTCGAGGA AGCCTCAGTC AGCAGAAGCC ACCAAACTCG 138004 .......... .......... .......... .......... .......... .......... 687 ACAAACCGGG CATAGAAGGC ATGAGCCTTA TCCTCCACAT TATGAAGTAT TATCACCATC 137944 .......... .......... .......... .......... .......... .......... 687 TCATAACAAA ATTTAATAAT GTGATAGTCA TGGTGCCTCT CTCGACTAGT GGCATTGGGA 137884 .......... .......... .......... .......... .......... .......... 687 AAATGGATGA AGGGGGTGTT ATCATCATTT TGACCAGCCA TTTGGGATAA CCTGTAGAAA 137824 .......... .......... .......... .......... .......... .......... 687 TAAGATAAAG TAGAAAATTA TAGACCAGGT AGGGAAGCCA AAAACGAAAA ATAGAAAATT 137764 .......... .......... .......... .......... .......... .......... 687 TATAGAAAAA GAGATCCAGC TACTGACCTG GGCCACGCCG CTGCAGCAGA AATCATCCCG 137704 .......... .......... .......... .......... .......... .......... 687 CTACAACAAG ATGATGCAGA CCCCTGCAGC AAGATGCAGG CCGCTACATC GACCTTCATC 137644 .......... .......... .......... .......... .......... .......... 687 TAGGACGAAG TCCAGATGCG AAAATGGAAT TTTTTGTCCC AAAATCCCCA TTTTATCATA 137584 .......... .......... .......... .......... .......... .......... 687 ATTTCAGCAG ATCAGAGTAT ATCAACTACC TTAAACACGA ATTAGTAATT GTTCGACCAA 137524 .......... .......... .......... .......... .......... .......... 687 ATAACCTTTA AATTGCGTGT AAATCTGAGT TCATTCAACT TCCCTCACCC ATTGTTGTAT 137464 .......... .......... .......... .......... .......... .......... 687 CGATTTAACC TTGCTTTTAT GGAATCTTTA CTTCCAGGAC GTGGTATAAA CGTTGTGGAT 137404 .......... .......... .......... .......... .......... .......... 687 GTTAGAGAAG TAATCATGCT ACATTTTTCT AACCCATTTA GCAACCTAGT TCAATTTTAA 137344 .......... .......... .......... .......... .......... .......... 687 AATAACTACC CAAAAACTGC TTCTAGTCAA TTTGATTCTA GCATGCAACT AATAGTAATT 137284 .......... .......... .......... .......... .......... .......... 687 GTAGTGATTA ACATACTGAA AGAAAAGGAA AGAGAATTTA CGGAAATTCC AATGAGTTTT 137224 .......... .......... .......... .......... .......... .......... 687 GGAGGAGGGG AAATTGAGAA AATTTGAGAG TGGCGGAGGA GTATGAAGGA AATGGAAAAT 137164 .......... .......... .......... .......... .......... .......... 687 TTTATTCCTT TTCCACTTTT TCTGTTGCTC GATCTCCCAC TCCAACGGGA GATCTCCCGC 137104 .......... .......... .......... .......... .......... .......... 687 TGCAGCGGAA AGCCTGCCTC TCCAGCGGGC AAGACCTTTG GGAGAATTTT GAGTCAGTTA 137044 .......... .......... .......... .......... .......... .......... 687 ACCAGGTTTT TTGCATCGCA GGTTAAACTA CCCTAGCATG AAAACGCAAC ACTCCTTCTG 136984 .......... .......... .......... .......... .......... .......... 687 TGTAGTGCGT TTTACCCCTT CGTTATTGCA TGTTTATATT CTTTTAGGAT CCCGAAATCT 136924 .......... .......... .......... .......... .......... .......... 687 CTAGGGGTTG CAAACTTTAG TCATTCCGTT TAAGAGTCAT ATCGCTAGTA GGAAGCATCC 136864 .......... .......... .......... .......... .......... .......... 687 GGAGTGAGAG AGTGTAACGA CCCAAACAAC CGTTATTTGA TAAGAGCATA ATTCGCAAAA 136804 .......... .......... .......... .......... .......... .......... 687 TTCTGGTTAC TTTCCCGCTA CAGAGGTACA TGTTTCACTA GCGCGGCGTC GTTGCAACAA 136744 .......... .......... .......... .......... .......... .......... 687 CAACTTACCC CACTAAAGTG GAATCGGCAA GGTAGAGTTC AAATTTTTAG AATTCTTATT 136684 .......... .......... .......... .......... .......... .......... 687 TTTCCATATT TTCAAATTTA ACCTATAGAT CGTAAATTAC CCTAAAACCC CTAGAAAAGT 136624 .......... .......... .......... .......... .......... .......... 687 TATATCGAGT TGGAAAAAGG AGGAGAGGGA GCTTTTAAGC ATGGGAATGG CGGAACCTTG 136564 .......... .......... .......... .......... .......... .......... 687 CGAAATATTG GCCAACTTTC ACCATAGCAA ACCCGGAAAA GTTGGAAACA AAATCAAAAC 136504 .......... .......... .......... .......... .......... .......... 687 TCCATAGAAA TTTCTTGGTA CCCAAGTAGG TTAGATATTA TGTTTAACTA GTTATAAATC 136444 .......... .......... .......... .......... .......... .......... 687 CATTCTTACC ATGTAATATA TAAATTAAAC AGTATGAGGT ATGTGTAAAC CTTCATGCAC 136384 .......... .......... .......... .......... .......... .......... 687 TGAGTAAATT CCGTGAAAAG TTGTTATAAT TCAATGTTTT TGGAGTTAGT ATTGTGTTAA 136324 .......... .......... .......... .......... .......... .......... 687 GATGGTAATC AATCGAGGTT CTTATACGTG TTCTTGAATG GGTTTGTTTT TAATTTATGG 136264 .......... .......... .......... .......... .......... .......... 687 TATAATTGTG ATAAAGAGTT GTAGTCGGTG TAAGGAAAAC TAGTATGAAA CTTGATGAAG 136204 .......... .......... .......... .......... .......... .......... 687 AACTAGAACT CGGACTTGTG TAATTCCGTA AGAAAAAATC GAGGGAATCC ATACGTAATT 136144 .......... .......... .......... .......... .......... .......... 687 AAGCATATTA CTAGGTGATT TTATGTGGTG TGATATACAC TTTTTGTGCT TCGTTATGAT 136084 .......... .......... .......... .......... .......... .......... 687 ATTTATATAT GTATTCATAT TACAATAATG GTCTTAGATG TTGAAACGAG ATATGCAAAT 136024 .......... .......... .......... .......... .......... .......... 687 TATCGATGCT ATGAAAGTTT TGCTTAGATG TATGATCTTT ATGTGTTATT GTAATGTGTG 135964 .......... .......... .......... .......... .......... .......... 687 ATTGGGATCG GATTTCCACT ATTTGTCATA CTAACTTGGA TCGAATTGTC ACGTTCCGGA 135904 .......... .......... .......... .......... .......... .......... 687 ATACTAACTG GGATTTTTTG CCATGTTTCA GCATAAAACT TGGATCAGAT TGTCACGTTC 135844 .......... .......... .......... .......... .......... .......... 687 CGGTATGCTA AATGAAATCG GTTGCCACAT TTTGACATAA AATTGAATCA GATTGCCACG 135784 .......... .......... .......... .......... .......... .......... 687 TTTCGACATG CTAACTGTTC TACTTTGGGT CCCGTGAGAG GGAAAACTAC TTTTGATAAA 135724 .......... .......... .......... .......... .......... .......... 687 GGTAGTGCGG TGTAATATGT TATGCTCAAT ATCGTGAGTT GTGTACATGT GTCTATATGT 135664 .......... .......... .......... .......... .......... .......... 687 TGGGAGTTAT ATTTAAGCTA TGATATATTG GAACCTTAAG TGTGGTAGTG GTACTTGTCG 135604 .......... .......... .......... .......... .......... .......... 687 TATATAATGT GGTTAGTATG TTTAAGATAT GATCTAATGA AACCTTAAGT GTAGTAGTGG 135544 .......... .......... .......... .......... .......... .......... 687 TACTTGTAGC ATACAATGTG ATTAGTAATG TTTAAGCTAT GATCTAATGG AACCTTGAGT 135484 .......... .......... .......... .......... .......... .......... 687 GTGGTAGTGG TACTTGTAGT TATACAATGT GGTTAGTATG TTTAAGTTAT GATCTATGGA 135424 .......... .......... .......... .......... .......... .......... 687 GCCTTAAGTG TGGCAGTGGT ACTTGTAGTG TACAATGTGG CTAGTATATT TAAGGTATGA 135364 .......... .......... .......... .......... .......... .......... 687 TTTGATGTAA TCTTAAGTGT GGCAGCAGTA CTTGTAATAT ACAGTATGGT TAGTATGTTT 135304 .......... .......... .......... .......... .......... .......... 687 AAGTTATGGT CTAATGGAGT CATAAGTATG GTAGTGGTGT GTGTAGTATA CAAGGTGCTT 135244 .......... .......... .......... .......... .......... .......... 687 AGCATATCTA GGTTGTGACC TCGTCAGAAA AAGATGGGTG GTAATTGGAA GGTGTTCTAA 135184 .......... .......... .......... .......... .......... .......... 687 AGAAAGTGAG AAGTCCAAAC ATGATCTTTT ATTGTTTAGT TCATATATTA TGAGGTGGGC 135124 .......... .......... .......... .......... .......... .......... 687 GTCAGGTTGA CTGATGATGC TTACCAGTAC GTGTGGTTGT ATTGATACTA CTCTTGCTAT 135064 .......... .......... .......... .......... .......... .......... 687 GTCTGTTGAC ATAGTCCACA TGTAGGATTG GT 135032 ||||| || .......... .......... .....GATTG GT 694 hqPGS_C01HBa0216G16.1-_SGN-U313022+ (143041 142865) ******************************************************************************** EST sequence 41 -strand 870 n (File: SGN-U340257-) 1 CGGGGGGTAA AAGTTTACCC GGTTTCCCCA ATTTTTATTC CCCCCCTTTA AAGGGGAAAA 61 CCCCGGAAAA AAATCTCGTT CCACAACAGA AGTTTCTAAA GGGTTAAGCC TCCGATTTGG 121 CATACTTTGG GGCCAACTCT GAGCTGTCCT GAGTCTATCC TGAATCACTC TCACNTGCTN 181 CAAAGCCTCT TGAATCAAAT CTGTACCTCC GGGCNTAGGC TCTGTAGACT CGAACCAGCC 241 CACTGGAGTG CGACAACGCC TACCATACAA GGCCTCAAAC GGGGCCATCT GAATGCTAGA 301 ATTGTAGCTG TTGTTATATG CAAATTCCGC CAAAGGCAAG AACTGGTCCC ATTGACCACC 361 AAACTCCAAA ACACAAGCCC GTAGCATGTC CTCAAGGACC TGAATAGTGC GCTCTGACTG 421 ACCATCAGTC TGCGGGTGGA AAGCTGTGCT CAGGTCAACC TGGGTGCCCA ACTCATCCTG 481 AAAGGTCCTC CAAAAGCTAG ACGTGAACTG AGAACCCCGA TCTGATATAA TAGAAACTGG 541 CACCCCATGA AGTCGAACCA CCTCCCGAAT GTAGATACGA GCCAACCTCT CGGCACTAAA 601 TGAAGATTGA ACGAAAAGGA AATGTGCTGA CTTGGTCAAT CGATCAACGA TGACCCAAAT 661 ACTATCAAAT CCTCTAGAAG TCCTCGGTAG ACCAGCCACA AAATCCATAG TAATGCGGTC 721 CCACTTCCAC TCCGGAATGG GTAATCCCTG AAATTCACCA CCAGGCCTCA AATCTCGTGC 781 CGAATTCCTG CAGCCCGGGG GATCCACTAG TTCTAGAGCG GCCGCCACCG CGGTGGAGCT 841 CCAGCTTTTG TTTCAATNAA NGGGGTCCAT Predicted gene structure (within gDNA segment 145918 to 153388): Exon 1 147301 147325 ( 25 n); cDNA 89 111 ( 23 n); score: 0.640 Intron 1 147326 147472 ( 147 n); Pd: 0.972 (s: 0), Pa: 0.542 (s: 0) Exon 2 147473 147481 ( 9 n); cDNA 112 120 ( 9 n); score: 0.667 Intron 2 147482 147861 ( 380 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 147862 148227 ( 366 n); cDNA 121 485 ( 365 n); score: 0.844 Intron 3 148228 150888 (2661 n); Pd: 0.444 (s: 0.68), Pa: 0.000 (s: 0) Exon 4 150889 150898 ( 10 n); cDNA 486 495 ( 10 n); score: 0.900 MATCH C01HBa0216G16.1+ SGN-U340257- 0.844 410 0.471 C PGS_C01HBa0216G16.1+_SGN-U340257- (147301 147325,147473 147481,147862 148227,150889 150898) Alignment (genomic DNA sequence = upper lines): GAATTCTCTA AAAGACGTAA AGAAGGCATT GCGGCAAAAA TGACCTAAAG GGTCATTATA 147360 ||| | |||| || | || | || GAAGTTTCTA AAGG--GTTA AGCCT..... .......... .......... .......... 111 ACATCTACTA CTAAATGAAC TTTAGTCCGC AAAAGTAATG ATAAGGATGT ACTTGAGGGC 147420 .......... .......... .......... .......... .......... .......... 111 TCCAATAATC TAGTAAACTA CTTTGGCATC TCCTGCTCTT TATCCTAGAT AGCCTACTCG 147480 || | | | .......... .......... .......... .......... .......... ..CCGATTTG 119 GGTAGACGGT GCCTCTAAAG GACCCTAACA ACATAAATGA CTCTCGATGG CAACTGTCTG 147540 | G......... .......... .......... .......... .......... .......... 120 ACATCTCTGG CTAGAATATC AATTGGCTCC TAGGTCAAAC AACATCGAAC TCAATTGAGT 147600 .......... .......... .......... .......... .......... .......... 120 CATACTGGAG CACATGGGAC TCATCAGGAG TTGATCGATG CAACATCTAG ACATAGAAAA 147660 .......... .......... .......... .......... .......... .......... 120 CTAGGTGGAT GGCTAAAAAT GTTGGAGGTG GGGCAAACTC ATAAGCAACC TCCCGAACTA 147720 .......... .......... .......... .......... .......... .......... 120 TTTGAAGTAT CTCAAAAGAC CCAATGTACT TGGGGCTAAT GTTGCCCCTC CTTCTGAACA 147780 .......... .......... .......... .......... .......... .......... 120 TCATCAAACC CTTCAAAGGA GACACATGGA GGAATACCCG ATCACCAATA AAAAATCTCA 147840 .......... .......... .......... .......... .......... .......... 120 ATGGTCAAAT CTTTCGATCC GCATAACTGT GGTGCCTACT CTGAGCTGTC CTGAATCTAT 147900 ||| ||| | || ||| ||| |||||||||| |||| ||||| .......... .......... .CAT-ACTTT GGGGCCAACT CTGAGCTGTC CTGAGTCTAT 158 CCTGAATCAC TCTCACCTGG TCCAAACCCT CCTGAATCAA ATCCATACCC CGCGGCCTAG 147960 |||||||||| |||||| || | |||| ||| | |||||||| ||| |||| | ||| ||| CCTGAATCAC TCTCACNTGC TNCAAAGCCT CTTGAATCAA ATCTGTACCT CCGGGCNTAG 218 GGTCTATAGA CTTGAACCAT CCCACCAGAG AGCGATAACG CCTACCATAC AAGGCCTCAA 148020 | ||| |||| || |||||| ||||| ||| |||| |||| |||||||||| |||||||||| GCTCTGTAGA CTCGAACCAG CCCACTGGAG TGCGACAACG CCTACCATAC AAGGCCTCAA 278 ACGGGGCCAT ATTAATGCTA GAACGGTAGA TGTTGTTATA CGCAAACTCC GCCAAAGGCA 148080 |||||||||| | ||||||| ||| |||| |||||||||| ||||| ||| |||||||||| ACGGGGCCAT CTGAATGCTA GAATTGTAGC TGTTGTTATA TGCAAATTCC GCCAAAGGCA 338 AGAACTGATT TCAATGACCA CCAAACTGCA AAACACAAGC CCGTGGCATG TCCTCAAGGA 148140 ||||||| | || |||||| ||||||| || |||||||||| |||| ||||| |||||||||| AGAACTGGTC CCATTGACCA CCAAACTCCA AAACACAAGC CCGTAGCATG TCCTCAAGGA 398 CCTGAATAAT ATGCTCTGAC TGAACATCAG TCTGCGGGAG GAAATCTATG ATAAGGTCAA 148200 |||||||| | |||||||| ||| |||||| |||||||| | |||| || || | ||||||| CCTGAATAGT GCGCTCTGAC TGACCATCAG TCTGCGGGTG GAAAGCTGTG CTCAGGTCAA 458 CTCGGGTGTG CAATTTAGCT TGATATTGCA AGAAAATCCT TCAAACCAAA TCTTGAAATT 148260 | ||||| ||| | | | ||| | CCTGGGTGCC CAACTCATCC TGAAAGG... .......... .......... .......... 485 AATTAATTTC CAAGTTTGCA ACCAATAATC TCCAATACAC AAAATAGAAC AATAATAATA 148320 .......... .......... .......... .......... .......... .......... 485 GTAGTTAACC CCAAAAATGA GGTTTTAATA CCTTATAAAT AGAAAACATA GTCCTAAAGA 148380 .......... .......... .......... .......... .......... .......... 485 AAAAGGAATA CAAATAAGGA GTGTTTTGTC CAGGTACGCG GCTTCAATCA ACGACCACAT 148440 .......... .......... .......... .......... .......... .......... 485 TGTTAGATCT TCGATCAATG GAAGGTCTGT CGACTGCCTC CGTCGGTTAG TACTTAGAGA 148500 .......... .......... .......... .......... .......... .......... 485 AATTTTCTCC ACCGTATATC AATACGGTCA GTCGACTGCC TCCGTCGATC CATCTACGAT 148560 .......... .......... .......... .......... .......... .......... 485 TCGTCGATGG GCCTCTATTT CTCCGTTCTT AGAATCTTGA AAATTAAGGT ACTGGAAGTT 148620 .......... .......... .......... .......... .......... .......... 485 TCTCCGAACC AATCGACGAT TCACCAGTTT GGGTCCGTCG ATCAATCGAC AGACCGTTGT 148680 .......... .......... .......... .......... .......... .......... 485 TTACTATCGT GCTTCTAGAA TTGGTCAGAT TTTTCTGATC TTCTCCTAAA GCGTGAATTG 148740 .......... .......... .......... .......... .......... .......... 485 CACCGACGAT CACCAACTTT GATCCGTCGA TCAAACGACT GACCGTCGAT AACCTTCGTA 148800 .......... .......... .......... .......... .......... .......... 485 GGTCATCTTT TGCAATTTTT TGCTCCCTTA TGCGCTTTCA ACCTAGACAT CTTTCCTGCT 148860 .......... .......... .......... .......... .......... .......... 485 AAACAAAACA AAAACTTGTT AAAAAATACT ACAAAAAGGT TTTAGACACA CATAAATCTT 148920 .......... .......... .......... .......... .......... .......... 485 AAGTAAAATG CATTGAAAAT ACCATGAAAC CATGGTACAT CAACACCCTC AACTTAAATT 148980 .......... .......... .......... .......... .......... .......... 485 TGTTGTTTGT CCTCAAGCGA CGCACTATGA CTCAAAACAA CATTTGTACA AAAGTATACA 149040 .......... .......... .......... .......... .......... .......... 485 CTTTTAAGCT ATAGTAATCA CATGGCTATC AATCCTGACT CTTCCTTTGA TTTAGTGTAG 149100 .......... .......... .......... .......... .......... .......... 485 GCTTACACTC TTAGGCTCGA CAAGCTTACT CATGTGGATC ACATCATGAT ACAAACTCAC 149160 .......... .......... .......... .......... .......... .......... 485 CATGCAACAC ACACTTCTTC TACTTTGTCT CTCACCAAGA TACCAACTTT CCGATGCCGC 149220 .......... .......... .......... .......... .......... .......... 485 AACTAGTCCC TTCACTTAAA AAAAACCTCA TTTTTCCCAT AGTGATTATG CATTTGGGTA 149280 .......... .......... .......... .......... .......... .......... 485 CAAGGATATT TGTTCAACAC TCGCACTCAG GAACAAGTTC AAATACAGTT AGTAATCTTC 149340 .......... .......... .......... .......... .......... .......... 485 GCCATAGGCT TGCCCTTATT TTCACTACAT AGGTTCACCA CACTAGACTC TAGGATCACG 149400 .......... .......... .......... .......... .......... .......... 485 GTAGTACTTT CTTGGATTGT AACGTAGGCT CACAGTAAGG TGTGGTACAT TTGGGTACAT 149460 .......... .......... .......... .......... .......... .......... 485 TTTTGCTGAC ATTTTTCCCT CATTGACATT AAGTCTAAGC TTTCTACCTC TTTTCATTGC 149520 .......... .......... .......... .......... .......... .......... 485 CTTTGACATC CTAATTCTCT TCTCTTCTCT TCTTTGTCTT GTTCCCTTTT TTGGATGTGA 149580 .......... .......... .......... .......... .......... .......... 485 CTTCCACTTC TTTTGCATCT TTTTCTCTTA AACCTCTTTC TTTTTCTATT TTCTTTTCTT 149640 .......... .......... .......... .......... .......... .......... 485 TTTCAATCAA TTGGTAATTT CTACAAGTCA CATCTTTATA TCATTTAAGC TTTTCTTTTC 149700 .......... .......... .......... .......... .......... .......... 485 AACATCTAAC TCATTTCATA CCCATTTTTG GGTCCTCACT CATAATAGCC ACCCTCAAGT 149760 .......... .......... .......... .......... .......... .......... 485 CATGAATTTT CCATGAGTTG AGGTTCACAA TACCCAAAGT TGGGTTAGGG CCAAGATGAG 149820 .......... .......... .......... .......... .......... .......... 485 GTCACTTACT GCATTAGCCA CCCTTAACTT AGACTTTTGG TCTAAGTCGA GGTGCACATG 149880 .......... .......... .......... .......... .......... .......... 485 TCCAAGGAGG GACTGGGGAA AAAATATTAG ACCTTGGGAA AGTGAGTTGG TGAATTCTAA 149940 .......... .......... .......... .......... .......... .......... 485 AAATTGGTCT ATTACATGCT CAATATATTC GGATCAAAAG GGAAAATTAT TTCATTTGGT 150000 .......... .......... .......... .......... .......... .......... 485 TAACTTCTTT TACGCTAGAT ATTGGCTATT TCGAACAAGG GCCTATGATT ACTTCCTAGC 150060 .......... .......... .......... .......... .......... .......... 485 TTCTAACATA GATTATCTTT GCAGGACTAG CCGGGCAAGT TCTAGTTAGG TACCAATTGT 150120 .......... .......... .......... .......... .......... .......... 485 TGAACACTCA AATATCCTCA CACTCTCTTG ACACATTATT ACACTATCAG ATTATCAGCT 150180 .......... .......... .......... .......... .......... .......... 485 TTCCCAGTTC AACTTTAGCT GAAGGTCATG CAGTGGGTTC CTATTTATGT CATGCTTGGA 150240 .......... .......... .......... .......... .......... .......... 485 GCCAACATAT TCAACTTATC TTAATCAATA CATGTTCACA CTATCCAGGT CGGGATATTA 150300 .......... .......... .......... .......... .......... .......... 485 TTTTTATCAG CCATCATGCT TCTATACTTG TAAAAACTAC AACATGCTGG TTCAACAAAA 150360 .......... .......... .......... .......... .......... .......... 485 AATTAAGCAG TCTCTCTGGG AAAAACAACA TAGCCAAGAA AATCCCAAGA GATGATTGTG 150420 .......... .......... .......... .......... .......... .......... 485 AGTTGGGTTA CTTAGACTTC ACCCTACCAC TTACTTTCCA TTTACCCCAG CTCCAGCTAA 150480 .......... .......... .......... .......... .......... .......... 485 AAACATACAA TTGTCTGCAA TGCATAAGAA ATCACATATA CAAAGTAGTA GGTGAAACAA 150540 .......... .......... .......... .......... .......... .......... 485 ACTTTTGGCG CATAGAGCCG AAGAACTTTC AACAAGCGGC CTGGTTTGCT TGAACTCGCA 150600 .......... .......... .......... .......... .......... .......... 485 AGATCGTCAC TTGGGTCACC CTTAGTAGTG CCCAGGTCAA CCTGTGCACA ATCAGTAGTG 150660 .......... .......... .......... .......... .......... .......... 485 CTACTATCAC CGATCACTGG TACAGAACTG GATGCCCCAA CAACCATCTC CAATTCTCTC 150720 .......... .......... .......... .......... .......... .......... 485 CTTTAATGTA TATCTTCTTC TACCAAGAAG GACCTCCTAG CGCGCTCCAG ATCTATCATC 150780 .......... .......... .......... .......... .......... .......... 485 TTTTTTTTTG CATGGGCCTC ATCACCGGCC TTAATGGTAT GGCGGGAGCG GTACCTCTTG 150840 .......... .......... .......... .......... .......... .......... 485 GTACGCAGAC GCTGCTCAAG CTAAGGCTCA GCAGAGACTT TGAACAAGGC CTCCAAAA 150898 | |||||||| .......... .......... .......... .......... ........TC CTCCAAAA 495 hqPGS_C01HBa0216G16.1+_SGN-U340257- (147862 148227) ******************************************************************************** EST sequence 3 -strand 783 n (File: SGN-U334737-) 1 GAAAAGTAAT CCTTATACTC AAACTAAAAT CACTGTGTGA AAAAGGAGGA TTTTGTCTTA 61 TAGTGAGGAC ACTAGTTGCA ATACTAGAAT TGTTAGCACC TCGGTGAGAA ATTGAAGAGG 121 ATAGGTGTTA GTGCATGGTA AGTCTGTGTC ATATTCTGAT CCCACAAAAT TCAAACCTAA 181 TAGTGATAGC ATGCATAGAT TTGATGAGAT TAATCGGGAT TGATAGCCAA ATGATTGCAA 241 AGGATAAAAC ATGGATACTA TTGTACAAAG ATTGTGTAGT GAGTCATAGT GCGTCGCTTG 301 AGGACAAACA ACTAATTTAA GTTGAGGGTG TTGATATACC GTGGTTTCAC GGTATTATTA 361 ATACTTTTTC CTTAAGCTTA GTGTGTCCAA AAGCCTTTTT GTGCTAATTT TTATATAAGT 421 TACTCTTTGT TTTGCAGGAA ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA 481 TGCAGAAGAA ACCACCTACG GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG 541 TGGAAGCGTA GTGCAGCTGC TGAAGGAAGA TAGGGAAGTC TGACTAAGTG TGGGATTACG 601 AAGCTTGTGA CGGTCCGTCG TGGATCTGAC GGTCCGTCCT GCAGGTTCGT CGTGAAGTTC 661 AGAGAAGTGA TCCCAGTACC CAAATTCCAA GAGTTGAAGT GTATTAGAAC AAAGACCCTC 721 GCCTGCAGCC CGGGGGATCC ACTAGTCTAG AGCGGCCGCA ACCGCGGTGG AGCTCCAGAT 781 AAT Predicted gene structure (within gDNA segment 152414 to 143879): Exon 1 149295 148588 ( 708 n); cDNA 1 699 ( 699 n); score: 0.660 MATCH C01HBa0216G16.1- SGN-U334737- 0.660 708 0.904 C PGS_C01HBa0216G16.1-_SGN-U334737- (149295 148588) Alignment (genomic DNA sequence = upper lines): GAACAAATAT CCTTGTACCC AAATGCATAA TCACTATGGG AAAAATGAGG TTTTT-T-TT 149238 ||| | || |||| ||| | ||| | || ||||| || | ||||| |||| |||| | || GAAAAGTAAT CCTTATACTC AAA-CTAAAA TCACTGTGTG AAAAAGGAGG ATTTTGTCTT 59 A-AGTGAAGG GACTAGTTGC GGCATCGGAA -AGTTGGTAT CTTGGTGAGA GACAAAGTAG 149180 | ||||| | ||||||||| | ||| ||| | | || ||||||| | | || ATAGTGAGGA CACTAGTTGC AATACTAGAA TTGTTAGCAC CTCGGTGAGA AATTGAAGAG 119 AAGAAGTGTG TGTTGCATGG TGAGTTTGTA TCATGATGTG ATCCACATGA GTAAGCTTGT 149120 | | |||| | ||||||| | ||| ||| |||| | || |||| || | || | | GATAGGTGT- TAGTGCATGG TAAGTCTGTG TCATATTCTG ATCC-CA-CA -AAA---T-T 171 CGAGCCTAAG AGTGTAAGCC TACACTAAAT CAAAG-GAAG AGTCAGGATT GATAGCCATG 149061 | | ||||| |||| ||| | || | | | | || | || ||||| |||||||| CAAACCTAAT AGTGATAGCA TGCATAGATT TGATGAGATT AATCGGGATT GATAGCCAAA 231 TGATTACTAT AGCTTAAAAG TGTATACTTT TGTACAAATG TTGT-T-TTG AGTCATAGTG 149003 ||||| | | | | ||| || ||||| | |||||||| |||| | || |||||||||| TGATTGCAAA GGATAAAACA TGGATACTAT TGTACAAAGA TTGTGTAGTG AGTCATAGTG 291 CGTCGCTTGA GGACAAACAA CAAATTTAAG TTGAGGGTGT TGATGTACCA TGGTTTCATG 148943 |||||||||| |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | CGTCGCTTGA GGACAAACAA CTAATTTAAG TTGAGGGTGT TGATATACCG TGGTTTCACG 351 GTATTTTCAA TGCATTTTAC TTAAGATTTA TGTGTGTCTA AAA-CCTTTT TGTAGTATTT 148884 ||||| | || | | |||| | ||||| ||| ||||||| | ||| |||||| ||| || || GTATTATTAA TACTTTTTCC TTAAG-CTTA -GTGTGTCCA AAAGCCTTTT TGTGCTAATT 409 TTTA-ACAAG TTTTTGTTTT GTTTAGCAGG AAAGATGT-C TAGGTTGAAA GCGCATA-AG 148827 |||| | ||| || | ||| |||| ||||| ||| ||| | | | |||| ||| | | TTTATATAAG TTACT-CTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT 468 GGAGCAAAAA ATTGCA-AA- AGATGACCTA CGAAGGTTAT CGACGGTCAG TCGTTTGATC 148769 |||| || | | |||| || | | ||||| || || |||| ||||||| | |||| TGAGCGAAGA AATGCAGAAG AAACCACCTA CGGAGCTTAT -GACGGTCCG TCGTGCTTGT 527 GACGGATCAA AGTTGGTGAT CGTCGGTGCA ATTCACGCTT TAGGAGAAGA TCAGAAAAAT 148709 ||||| | || ||| | ||| |||| | | || | | | ||||| | || || | GACGGTCCGT AGGTGG-AAG CGT-AGTGC- A-GC-TGC-T GAAG-GAAGA T-AGGGAAGT 579 CTGACCAATT CTAGAAGCAC GATAGTAAAC AACGGTCTGT CGATTGATC- GACGGACCCA 148650 ||||| || | | | | || || || |||||| || || | |||| ||||| || CTGACTAAGT GTGGGATTAC GA-AGCTTGT GACGGTCCGT CG-TGGATCT GACGG-TCCG 636 AACTGGTGAA TCGTCGATTG GTTCGGAGAA --ACTTCCAG TACCTTAATT TTCAAGATTC 148592 ||| | |||||| |||| ||||| | |||| |||| || | | ||||| | TCCTGCAGGT TCGTCGTGAA GTTCAGAGAA GTGATCCCAG TACC-CAAAT TCCAAGAGTT 695 TAAG 148588 ||| GAAG 699 hqPGS_C01HBa0216G16.1-_SGN-U334737- (149295 148588) ******************************************************************************** EST sequence 20 +strand 632 n (File: SGN-U321905+) 1 TTTCTTCTTT CAGCTTTCCT TTTCACATTT CTCTTTTCAG CAGAAGAATT GGCCGGTTCC 61 ATTGTCCCGA TACAGGCTGA AGAACTAAAG GTTTGAGGTG AAGAGATGTG AAGATAGCTG 121 AAGAACTAGT TCGCTTTTCT GATACAAGCT GAAGAGTTGA TGAACTGAGC TGAAGAGTTG 181 AACGATTCCT TAAAGAAAGA AATGTATACT GTTGGGTTGT TGACATGATG ATGAACTGAA 241 GCTAATTAGT CTCTCCGTCA CACTGTTCTC TCAAGTGTCT CATTGAAGAA CACAATTTCA 301 AAGAGATTTT GTTGGATTTG GGTTTATCAG GTTTTGCTGA GAGGAAACTA AGATTATGCA 361 GACATCAAAG TCAAGGTATT TCTTATCTCT TAACTGTAAA ATGACTATAT TTCATCCTTG 421 AAATAATGAC ATACAATGTC ATACAATTTT GTAGTTATTA TTATGTATTT ATTAGAATCA 481 AGAATGGTAA CAAGGTACTC GAAACTCGAA ACTCACAATA ATTCTGATCA TCCCATAACA 541 TATGATTCTG ATTCTGATTA TTTGAAGGCT CAAGGTGAAT TATTAAGGTG TGTGCTTCAT 601 TCTCTTGAGC TTNCTCATCC TGAAGTTTTT TA Predicted gene structure (within gDNA segment 179764 to 185753): Exon 1 180919 181001 ( 83 n); cDNA 115 198 ( 84 n); score: 0.566 Intron 1 181002 181289 ( 288 n); Pd: 0.729 (s: 0.52), Pa: 0.930 (s: 0.49) Exon 2 181290 181331 ( 42 n); cDNA 199 241 ( 43 n); score: 0.488 Intron 2 181332 181727 ( 396 n); Pd: 0.000 (s: 0.49), Pa: 0.635 (s: 0) Exon 3 181728 181758 ( 31 n); cDNA 242 271 ( 30 n); score: 0.516 Intron 3 181759 181882 ( 124 n); Pd: 0.485 (s: 0), Pa: 0.995 (s: 0) Exon 4 181883 181913 ( 31 n); cDNA 272 302 ( 31 n); score: 0.484 Intron 4 181914 183287 (1374 n); Pd: 0.683 (s: 0), Pa: 0.942 (s: 0) Exon 5 183288 183316 ( 29 n); cDNA 303 330 ( 28 n); score: 0.655 Intron 5 183317 184247 ( 931 n); Pd: 0.000 (s: 0), Pa: 0.986 (s: 0.92) Exon 6 184248 184538 ( 291 n); cDNA 331 630 ( 300 n); score: 0.856 MATCH C01HBa0216G16.1+ SGN-U321905+ 0.791 507 0.802 C PGS_C01HBa0216G16.1+_SGN-U321905+ (180919 181001,181290 181331,181728 181758,181883 181913,183288 183316,184248 184538) Alignment (genomic DNA sequence = upper lines): TAGCTGAAGA ACGTAGCT-G AAGTGAAGAT CGAAGAGAAC AAGCTGAAGA ACGTAGCTGA 180977 |||||||||| || ||| | | | ||| ||| | || ||| || || |||||| TAGCTGAAGA AC-TAGTTCG CTTTTCTGAT ACAAGCTGAA GAGTTGATGA ACTGAGCTGA 173 GCTGAATAAC -TTAGGTTAA CTAAAGTACT GATCAACATC TGAGCTGAAG ATTGTCTTCT 181036 | ||| | |||| ||| AGAGTTGAAC GATTCCTTAA AGAAA..... .......... .......... .......... 198 CTAGAACATG ATTTTCTCAA AGGGATGAAA TGCTGAAGCT TAAGAACTAA GGATAGAAGA 181096 .......... .......... .......... .......... .......... .......... 198 ATTGAGGATC GAAGAACTAA AGAGTGGAAT CTGAAAATCT TAAGAGCTTA GCGGAAGATT 181156 .......... .......... .......... .......... .......... .......... 198 TCTCCGTTTC CGATTTTGTC CAGTGTACTT ACAAATTATG TACAGTTGAG TTTCCTTCTT 181216 .......... .......... .......... .......... .......... .......... 198 ATTTTCTACT AATAATCTAG CACTAAAACA ATCTTCTTGT CAATTGATTG AATTTTTGTT 181276 .......... .......... .......... .......... .......... .......... 198 TTGTATTTAG AAGGAATTAA TTAATTCGGG GGTTCTTACA -GTTGAAATT CCAAAGTAGG 181335 ||| | || | || | | | ||| | ||| | ||| .......... ...GAAATGT ATACTGTTGG GTTGTTGACA TGATGATGAA CTGAAG.... 241 GGAAGAGAGT TTCGACAATC TGAACATCAA AGTTAGCCCT AGGAATCTCG AGTAGACAAG 181395 .......... .......... .......... .......... .......... .......... 241 AAAGAGAGAA TTAATACTCG AAGCATTTGA GTCTGTAAGT ATATATCTTT GTGTTTGTAT 181455 .......... .......... .......... .......... .......... .......... 241 TGCATTGTAC CTCTATTCCG TTTCTTATGC AACAATTTCT GCGTTACATT GTTTGTGTCT 181515 .......... .......... .......... .......... .......... .......... 241 TTTGTACCAG CAAATTGTGC AAGTAGTTAG TAAAAGTATA TCCTCAAGGT TCACTATTTA 181575 .......... .......... .......... .......... .......... .......... 241 CTATTGTTCT TTAAGGTGTG TGTTCCAGTA GCTGAGATTT GTTGCATCTC AAATTGAATA 181635 .......... .......... .......... .......... .......... .......... 241 TAGAAGTTTG AAAGAAACTT AATAACGTTG TGTGGTATCA AAAATTAGTT TGTTCAAGAA 181695 .......... .......... .......... .......... .......... .......... 241 GATTTGGATT TGTTTCCTTC CGTAATGAGC AGGTACTAAG ATGTCTTTGA TCA-ACT-TT 181753 || | || | ||| | ||| ||| || .......... .......... .......... ..CTAATTAG -TCTCTCCG- TCACACTGTT 267 CTGATGTAAA ACTTCTTCTC GTGTGCATTC CATCCAATAT AGGAAAAGAA AAAATTAGTA 181813 || | CT-CT..... .......... .......... .......... .......... .......... 271 GTGCCTATCT TGTGCTTTTC TATGAACCAT GTCAACCTTT TTATCCTTTC TTTTGGAATG 181873 .......... .......... .......... .......... .......... .......... 271 CTTGTGCAGG AGGTGCAAAA TGCAATAAAA GACTTGAATG GTAGGAACAA GTGGTCTAGT 181933 | ||| | | || || | | || | .........C AAGTGTCTCA TTGAAGAACA CAATTTCAAA .......... .......... 302 TTTTCAATAC ATCGATTTAA CATGATTTAT ACTAGTTTTT CAATACACTG ATTCAACATG 181993 .......... .......... .......... .......... .......... .......... 302 ATTTATACAC TTATATAAAA TTGTTTATTG AGATTTTGAT TCTTAATAGA GAACTTTTCC 182053 .......... .......... .......... .......... .......... .......... 302 AACCTGTCTT CTATTGAGGA AAATCTTGAT TGATTACTGA TTCTGTTCTT GTTCTATTTG 182113 .......... .......... .......... .......... .......... .......... 302 GAATTCTATA GCATATGACA AACTAAGATT ATTTTCTTGT TTTTTCGTGC GGGTATCTTC 182173 .......... .......... .......... .......... .......... .......... 302 ATTCTGTCAC TCACTATGCT TGTCATTCAC TCGCAAAGCT AAGCAGATCA TTGCATCTCC 182233 .......... .......... .......... .......... .......... .......... 302 TCCAGTCTTC ATCACAATCT AGTTTCACTA GGTGCTCTCC TATACTATAG TTCAATCTTT 182293 .......... .......... .......... .......... .......... .......... 302 TCTTTTTACT ATTTTTGTGA ACCATGCATG TAATGAATGT TGTGTACCCG ACAATTTATA 182353 .......... .......... .......... .......... .......... .......... 302 TAATTCTCTA TGTTTTAGAA ATACAAGCTA TGACATTTCA TTTTCTCCTA GAGATCATTT 182413 .......... .......... .......... .......... .......... .......... 302 TCAAATGGAT TAGAACTTGG TTTCATGTCA TGATGTTGCA TCATTACTTG GTTGTTTTAC 182473 .......... .......... .......... .......... .......... .......... 302 TTCCTAGATT AGTCAGCTTG ATCAAAGATA GGCTTGGTTT TCTATCTCAT CTAAATTGAT 182533 .......... .......... .......... .......... .......... .......... 302 CTTTAAGTCC GTGTTTAATC AACTTAAAGA TGACATTCTC TATCTTTTAT TTTGTGGTTT 182593 .......... .......... .......... .......... .......... .......... 302 TCAATGTATC TGTCGCTAAT GTCAATATTG AGATAATTTC AGTTTAAAGT TCATGTTTAG 182653 .......... .......... .......... .......... .......... .......... 302 TTTTGTGAGA TTTTTATCCT TGTTCGGATA GTGGCTGAGC ATGCTATTTT TGAATTTACA 182713 .......... .......... .......... .......... .......... .......... 302 TCTTTATTTA TTTGTGCTCG TAATTTTGTG AATCACTAAT TTTGATACCT CATGTCAAGT 182773 .......... .......... .......... .......... .......... .......... 302 AGGAAGTCAG TTTCTTTCTG TTGGTATTTC CCAAATAATG ATAACCCATT TAGGTGATTA 182833 .......... .......... .......... .......... .......... .......... 302 AATTTCCTCT AGTTTTCATT TATTTGTACA AGTTTCCTTA GTTGTAGTCC TTGTTTTATA 182893 .......... .......... .......... .......... .......... .......... 302 CTTTGAATCG TCTGTATTGT TTGCCTTTTT TGCATATCAA TTCGTCAATA AAATGATAGT 182953 .......... .......... .......... .......... .......... .......... 302 AAGTTGGAAT CGTCTGTATT ATTTGCCTAA AATCCTAGAT GCTAACTTCC TTCTGTTACT 183013 .......... .......... .......... .......... .......... .......... 302 AAACATCAAA TTATTTTCAA AGCATTGGCA GAATCAGTTT ATGAATGTAT TTTTTCTCTT 183073 .......... .......... .......... .......... .......... .......... 302 TTTTTGTTTT TGGCTTGTTA CTGCGTCTTT TATTGTATAT TTGGTTGCTG ATAGTTGAGG 183133 .......... .......... .......... .......... .......... .......... 302 TATTTTATTT GTTACTTAAG TCTTTTCTCT CTCTTTCTCT CTTCTGGAAC GTCTCGACTG 183193 .......... .......... .......... .......... .......... .......... 302 TATTTTCCTC GATTTTTCCT AGTTTTCTTT ATTCAAATCA TCCTTTATTT TGTTTGTTGA 183253 .......... .......... .......... .......... .......... .......... 302 TGTATTTCCT TTATTGATGT ATCCAATTGT GAAGGTGGTT TTCTTGTTCT TGTTGATTAT 183313 | | || || ||| | || | |||| .......... .......... .......... ....GAGATT TTGTTGGATT TG-GGTTTAT 327 TAGTTTGACC ATGAAAAAAA GATCATTATA GTTATTATGA GTAGAAATAG TAGAGTTAAG 183373 || CAG....... .......... .......... .......... .......... .......... 330 TGTCTTACAT GATTATTTCT TCCCAAAGTG TGTCAGTTTT GCCTGTAGTT CTCCTTATTT 183433 .......... .......... .......... .......... .......... .......... 330 AAAACTTTCC ATTGCTCATC TCATAGCTCA TTTGCCTTCT CCATATTTGG TTGTTGATTT 183493 .......... .......... .......... .......... .......... .......... 330 GTGTGTGTAG TTGTTGCTCC AGCTGGCTAT TTTCTTGGTA GTGATAATAG TAGTCGCCAG 183553 .......... .......... .......... .......... .......... .......... 330 GTCAATAGGG ATATCATTTT GAGCCTGATT TTTTCTTAAT CAAGCAGAAA ATGATTGGAT 183613 .......... .......... .......... .......... .......... .......... 330 AATAGTGTAG GAAGATGTTT CAGCCTTGGG AGTAGACAAT GATTCATCAT GTTCTATGTT 183673 .......... .......... .......... .......... .......... .......... 330 TTTGTAAATT TGGAGTACTT TGATCAATGT GTGTCATCTT CCCCCTTTTC TACATTGATA 183733 .......... .......... .......... .......... .......... .......... 330 TTGGAGATAT AATGATGACT AACGAACTGA AAAAGCTTAT ATGCTTTAAT ATATTTCTGA 183793 .......... .......... .......... .......... .......... .......... 330 TTTTTTATGT TTTCTTATTT TGTTTATCCT TATCAACTCA ATTTATATGC TTTATTATAT 183853 .......... .......... .......... .......... .......... .......... 330 TTCTGTTTTT TATGTTCCAA GCATATCATA TGGATCTCGA TTAATAGAAA TACTTCACAG 183913 .......... .......... .......... .......... .......... .......... 330 AATCTGCAAT CTACTAGAAT ATATAGTAAA AGATATGTTT TCTATAAAAT TATTTTTAAA 183973 .......... .......... .......... .......... .......... .......... 330 CTAGTAACAT TTTTATTTCA AATAGTACTT AGGTAGTACT GAAAAACATT TGTATTACAT 184033 .......... .......... .......... .......... .......... .......... 330 TGCAGTTGCC TAGTAAAGTT GCAATGTAAG AAGAGATGTC TCACTGTTCA TTAGCCTTCC 184093 .......... .......... .......... .......... .......... .......... 330 GAAATAGCAT GCTACAGTTT TTATTTTTCC TCTAAAAGAA ATAAAATCTC TTGTTGTCTG 184153 .......... .......... .......... .......... .......... .......... 330 TATAAAGATA CTATTTCTGT AATTTTTTAC TTTTGCATAC GAACACTTCG ATCAAACTTT 184213 .......... .......... .......... .......... .......... .......... 330 TTTCTAAACC ATGAAATATT CTCTGCTATT TCAGGTTTTG CTGAGAGGAA ACTAACATTA 184273 |||||| |||||||||| ||||| |||| .......... .......... .......... ....GTTTTG CTGAGAGGAA ACTAAGATTA 356 TGTAGACATC AAAAATCAAG GTATTTCTGA TCTCTTAACA GTAAAATGAC TATATTTCAT 184333 || ||||||| || | ||||| |||||||| | ||||||||| |||||||||| |||||||||| TGCAGACATC AA-AGTCAAG GTATTTCTTA TCTCTTAACT GTAAAATGAC TATATTTCAT 415 CCATGAAATA ATGACATACA A-----T--- -TT-TGTAGT TATTATTATG TATTTATTAG 184383 || ||||||| |||||||||| | | || |||||| |||||||||| |||||||||| CCTTGAAATA ATGACATACA ATGTCATACA ATTTTGTAGT TATTATTATG TATTTATTAG 475 AATCAAGAAT AGTAACAAGG TACTCGAAAC TCAAAACTCA CAATAATTAT GATCATCCCA 184443 |||||||||| ||||||||| |||||||||| || ||||||| |||||||| | |||||||||| AATCAAGAAT GGTAACAAGG TACTCGAAAC TCGAAACTCA CAATAATTCT GATCATCCCA 535 TAACATATGA TTCTGATTCT GATTATTTGA GGGTTCAAGG TGGATTCTTA AGGTGTGTTC 184503 |||||||||| |||||||||| |||||||||| || |||||| || ||| ||| |||||||| | TAACATATGA TTCTGATTCT GATTATTTGA AGGCTCAAGG TGAATTATTA AGGTGTGTGC 595 TTCATTCTCT TGAGCTTCCT TATCCTGAAG TTTTT 184538 |||||||||| ||||||| || ||||||||| ||||| TTCATTCTCT TGAGCTTNCT CATCCTGAAG TTTTT 630 hqPGS_C01HBa0216G16.1+_SGN-U321905+ (184248 184538) ******************************************************************************** EST sequence 36 -strand 799 n (File: SGN-U337473-) 1 CATGCTTCAA TATTTTATAT TTNCCGTCTG TTTTCGGTTT TGAATAGCAT CCCATTATTT 61 ATTTGCTTCT TGGAACATGG AAGCTGATGG GATTCTTTGT TTATAATGCT AATCATTCGT 121 AATACTCATC GATAGTACAT TAAGTAGCCA ATTTGTTTAT ACTACTAGGA TTTATTCTTT 181 TAATGAACTT GTTTGGATGA GTAGCTTATG TTTAGAAGAA ATTTTTGTTT TGTGTTTAGA 241 AGAAATTGAT TATTTTTGGG GTTCTTACAG CTGAAATTTC AAATTGATTA ATTGTTAAAT 301 TTCTTAATTT TGTGTTCTTT CTTGATGGAA CAGATTTGTT TACTAGAGAA ATTGATATTC 361 AAGCAGTTAA CGTTGTTATC AATTCAAACA TCTCTTTTTA TATAATTATA GGCCATGTGT 421 GTTTTGAATT CTCAAAACAG GAAAAAGCAA AATGGAGACA TCGAATGGGA CCTATTAGTT 481 TTGCAAGACG TGCAATCAAA GAAAACAATG AGGAACCACC AAAGTATGAA ATGTTTATTG 541 AAACTCGTAC AAAAATGGGA AAGGAACTTC AGGCCGATAC TCAAATTGCA ATAGTAAGTT 601 TCTAAAGTGT ATCAATGATG ACATATCACT ACTCAATTCA TATTCGAGTA TCGCTATCAA 661 AGAGATGTTA TTTTACCGAA CGTGTACTTC TACGGAAATA TCTACACTAT TACCAGTAGA 721 ATGTTACAGA GAGAAGAAAA CATCAAAAAT TAACTCTCAA CACTAGAACG TTATAATGAC 781 ACGTCATATC ACGACTAGC Predicted gene structure (within gDNA segment 183234 to 190183): Exon 1 185059 185454 ( 396 n); cDNA 1 396 ( 396 n); score: 0.891 Intron 1 185455 185560 ( 106 n); Pd: 0.000 (s: 0.84), Pa: 0.999 (s: 0) Exon 2 185561 185591 ( 31 n); cDNA 397 425 ( 29 n); score: 0.581 Intron 2 185592 186345 ( 754 n); Pd: 0.000 (s: 0), Pa: 0.977 (s: 0) Exon 3 186346 186353 ( 8 n); cDNA 426 432 ( 7 n); score: 0.750 Intron 3 186354 189359 (3006 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 189360 189372 ( 13 n); cDNA 433 445 ( 13 n); score: 0.846 MATCH C01HBa0216G16.1+ SGN-U337473- 0.891 448 0.561 C PGS_C01HBa0216G16.1+_SGN-U337473- (185059 185454,185561 185591,186346 186353,189360 189372) Alignment (genomic DNA sequence = upper lines): CATGCTTCAA TATATTTATA GTT-CCGTCT TGTTTCGGTT TTGGATAGCA TTCCATTATT 185117 |||||||||| ||| |||||| || |||||| |||||||| ||| |||||| | |||||||| CATGCTTCAA TAT-TTTATA TTTNCCGTCT GTTTTCGGTT TTGAATAGCA TCCCATTATT 59 TATTTGTTTC TTGGAACCTA GAAGCTAAT- GGATTCTTTG GTTTATAGTG CTAATCATTC 185176 |||||| ||| ||||||| | |||||| || ||||||||| ||||||| || |||||||||| TATTTGCTTC TTGGAACATG GAAGCTGATG GGATTCTTT- GTTTATAATG CTAATCATTC 118 GTAGTACTCA TCGATACTAC ATTAAGTAGC CAATTTGTTT ATACTACTAG GATTTATTCT 185236 ||| |||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATACTCA TCGATAGTAC ATTAAGTAGC CAATTTGTTT ATACTACTAG GATTTATTCT 178 TTTGATGAAC TTGTTTGGAT CAGTAGTTTG TTTTTAGAAG AAATTTTTAT TTTGTGTTTA 185296 ||| |||||| |||||||||| ||||| || | |||||||| |||||||| | |||||||||| TTTAATGAAC TTGTTTGGAT GAGTAGCTTA TGTTTAGAAG AAATTTTTGT TTTGTGTTTA 238 GAAGAAATTG ATTACTTTTG GGGCTCTTAC AACTGAAATT TAAAATTGAT TAATTGTTAA 185356 |||||||||| |||| ||||| ||| |||||| | |||||||| | |||||||| |||||||||| GAAGAAATTG ATTATTTTTG GGGTTCTTAC AGCTGAAATT TCAAATTGAT TAATTGTTAA 298 ATTTCATAAT TTTGTGTTCT TTATTAATAG ATTAGATTTG TTTACTAGAG GAATTGATAT 185416 ||||| |||| |||||||||| || || || | | ||||||| |||||||||| ||||||||| ATTTCTTAAT TTTGTGTTCT TTCTTGATGG AACAGATTTG TTTACTAGAG AAATTGATAT 358 TCAAGCAGTT AACGTTGTTA TCAATTCTGA TTTTCCTAAG AACACAGAAA CGTATTTGCA 185476 |||||||||| |||||||||| ||||||| | | || TCAAGCAGTT AACGTTGTTA TCAATTCAAA CATCTCTT.. .......... .......... 396 CAGGGTATGT ATAACATATA TTTGATCTTG CTTATTGGCT TATATATTTT TTTGCTATTT 185536 .......... .......... .......... .......... .......... .......... 396 CATCTTTGGT AATTTATTTT GCAGGTTGGA CAATTAGGGA GATTTGTGAA GTTTGGTTTA 185596 || | ||||| | | |||| |||| .......... .......... ....TTTATA TAATTATAG- GCCATGTG-T GTTTT..... 425 GTTGTTAGCC ATGTTACTTT TGAGGATCAC TTCACTTTGT ATGGACTAAT TATGTTCATT 185656 .......... .......... .......... .......... .......... .......... 425 TACTTTGTAC TAGATCATTA AGCTCTATGT GTTGATTTCT ACTACTACTA AAAGTATATA 185716 .......... .......... .......... .......... .......... .......... 425 TCTGATTGTG ACATATAGAA TTGAACAAGA ACTAGGAATA GAAATCAAGA AAATCCCTTC 185776 .......... .......... .......... .......... .......... .......... 425 ACAGATAGAT TAAGCTATAT ATAAAGTCTT CTATGTTAGC TCCCCTTATT TTTCTGAATG 185836 .......... .......... .......... .......... .......... .......... 425 AGTTTTTGAT GAAGTAAATT GACTTGTTTT GTAGTCCTGG TAGGTTCTGA TTAGACTTAA 185896 .......... .......... .......... .......... .......... .......... 425 AAGCTAGTTC AACTTGCTTG CTTTAGATCA TTTTAATGGT TTTCTTCCAT TTTTAGATTT 185956 .......... .......... .......... .......... .......... .......... 425 TGGAAGGCTA CATAACAATT GAAGTAAAAT ATAATGAACT CTTTAAAATT AGGTTTCCAG 186016 .......... .......... .......... .......... .......... .......... 425 TAGACCTTAT CACAGGATTC TGTTAAGCTT TGAACACTTC AAGATTCTTG AAAAATTTCC 186076 .......... .......... .......... .......... .......... .......... 425 TTATTCTTGA TTAGTTCATT AAATTTTGTC TATCCTATAA TTCACTGCCT TATTTAATTC 186136 .......... .......... .......... .......... .......... .......... 425 TTTCTATCCT ACTAATTTTA CTTATTTTCC CTTATAACAA AAATCAACAT TCAAAAACAT 186196 .......... .......... .......... .......... .......... .......... 425 TTGTGGAGGA TTCAAAGTTT GATTTGGCAT AACACAAGTG TCAGGACTAC GTAAGAAAAT 186256 .......... .......... .......... .......... .......... .......... 425 ATTATCATCT CATAACACCT GATTTTGGTA ACTTAATCAT GAATTTGATG ATTCTTATTG 186316 .......... .......... .......... .......... .......... .......... 425 AAATATCAAA TATTTATATC TTCTTATAGG AATTCAAATA TCCATCCAAG GATTGGATGT 186376 | ||||| .......... .......... .........G AATTC-T... .......... .......... 432 ATTTAGCAAG GTATAGCCAA CCCTATATTG ATGGTGTGGA ATCATTCCTC CAACCCTATA 186436 .......... .......... .......... .......... .......... .......... 432 TTGATGGTGT GGAATTATTC CAAGATTTTG CTTATTCTTA TGGAAATCCT CATGGAGAGG 186496 .......... .......... .......... .......... .......... .......... 432 AAATTCAGTG TCCATGTGCA AAATGGTGTA ATATTCGTTG GACTCGAAGG AATGTAGTGT 186556 .......... .......... .......... .......... .......... .......... 432 ATGATCATCT AACATGCTAT GGATTTGTTA AAGATTATAC TAGATGGATC AATCATGGAG 186616 .......... .......... .......... .......... .......... .......... 432 AATGAGATAT CAAGTTGAAT GTTGAAGATG ATATGGATTG CTCGCGTGAT TATACTGATG 186676 .......... .......... .......... .......... .......... .......... 432 AATTGTTGAA TGATCAATTT TAAAATGTGA AATTTTAAAG TTGAATTAGA ATTTTTAATT 186736 .......... .......... .......... .......... .......... .......... 432 AAAATAAATA ATTTTAAAAT TTGTTTATTT AGTTATATGT AAAATTAATA AATTCAAAAA 186796 .......... .......... .......... .......... .......... .......... 432 AAAAATCTTA ATTGTCTTTC TCAATTACAT TTATCTAGAT AATTGAAAAA TAAAAGAATA 186856 .......... .......... .......... .......... .......... .......... 432 ATAAGATTTC ACTAGAATAA AATACATCTG GAGATAAATT CTGGTTCATA TTAAGTGAGG 186916 .......... .......... .......... .......... .......... .......... 432 GTTCAACAAA AGAATTCAAC TTGGGCTTGA CATAAAGTTA AATATTTTAT AGAATATAAA 186976 .......... .......... .......... .......... .......... .......... 432 TTTAAAATGA TATATTAATA AAATTAAATT AGAAATATGC ATTAATTAGT CACAAAAGTT 187036 .......... .......... .......... .......... .......... .......... 432 GAGGGTATAT TATTATGTCT CAAATAAATA CCTTGGGGCA TGATACATTT TATATTGATT 187096 .......... .......... .......... .......... .......... .......... 432 CATCATAGAT TGATTTGTTG AGACTTGAAC AAGTGATTGT TGAATTTGAC TATATTCATT 187156 .......... .......... .......... .......... .......... .......... 432 TGTTTGTTGG AAGGTGAAAA AATAAAGAAG AAAAAAGATA CAAATAAAAT CACTAAAAAC 187216 .......... .......... .......... .......... .......... .......... 432 ATACAATATT TAGTTAGGGC AGATTATTAT TATATATTAA ATATATACTT GAGGCAGGAC 187276 .......... .......... .......... .......... .......... .......... 432 ACATGTTATA TTGATTCATT ATAGGTTGAT TTGATGGGAC CTAAACATAT TATTGTTGAT 187336 .......... .......... .......... .......... .......... .......... 432 TTTGACTATA TCATTTATTT GTTGGAAGCT GGAAAAAAAA AGAACAATAA TGACATAAAT 187396 .......... .......... .......... .......... .......... .......... 432 AAATCACTAA GCATACATAT TTAGTTTGAT TTATTTTTTT TATTATAAAA TTATTCGTAT 187456 .......... .......... .......... .......... .......... .......... 432 CAACTTATTA TGTATAATGT AGTCATTTAA CTTTAGAGAA AGATTAGTAG CGTGAAAATT 187516 .......... .......... .......... .......... .......... .......... 432 GTAATAGCTA TTAGTAATAC ATTGATTAGT ATTACAAAGA TATTTTTTAT TAAATGATCA 187576 .......... .......... .......... .......... .......... .......... 432 ATTTAGTATA AAATAGTATA ATGTACAATT TAAAGATGTG TGTGTTCCTT TAATAAAATA 187636 .......... .......... .......... .......... .......... .......... 432 TGAAAAAGTT ATTTAATATT ATTAGGGTAT TATTTTAAAA AAAAGCTCAC GTATTGCTAA 187696 .......... .......... .......... .......... .......... .......... 432 GATTTTTATA TTTGTTCCAC ATTTTACTGT ATGTAAAATT ATACATAGAT ATATGGTAAC 187756 .......... .......... .......... .......... .......... .......... 432 TTATAAATTG TTATATATCT TGTAAATAAA AACTAACAAC CAAACGTTGG TAATACTAAC 187816 .......... .......... .......... .......... .......... .......... 432 TTTTAAGTAT AATTATTTTT TCCAATTTCA ACCAAAACAT GATATAAATT ACTAGTGATT 187876 .......... .......... .......... .......... .......... .......... 432 TTAAATAGGG ACTAAATCTT ATCTAACATA AATAGGGTAT ATTTTTATTT GTAGAATAAA 187936 .......... .......... .......... .......... .......... .......... 432 AGATAATAAT TTCAAGAAAA TACTAAATCA TATTATCTAT GTTTGCTTGC ATTTTAATTT 187996 .......... .......... .......... .......... .......... .......... 432 TAAAATTGAC AACTCTAAAA TATTTATATT ATAATATTAA AATTACTTTT ATATCATAAT 188056 .......... .......... .......... .......... .......... .......... 432 GGCAAAGATG CCATTTTAAA ACTTTTTTTT CAAAGGCCTT AAAAATATAA GAATAAGAAT 188116 .......... .......... .......... .......... .......... .......... 432 TTAACAACAA TAATGAATTC ATTATTGTTC TTATAAAAAT AATAAAAAAA AGAAGAAATT 188176 .......... .......... .......... .......... .......... .......... 432 ATTATTCTAA AAAAAAGAGA AGAAATTATT ATTCTTATAA AACTCTGTAA CACTGAAATA 188236 .......... .......... .......... .......... .......... .......... 432 ATATAACCTA ATGAAATTAA ATACACAAAG CTTAAAGTGA AAAATCTAGT AAGTAATTAA 188296 .......... .......... .......... .......... .......... .......... 432 AACAATAAAT ACTTATATTC CTCTTGTAGT TACACCAAAT TAATTAAGTG CAACATTGAT 188356 .......... .......... .......... .......... .......... .......... 432 ATTTTACGTA CACATTTATG GTCTAACACG ATTAAATGAT ACTTTTTATC AACGTATACT 188416 .......... .......... .......... .......... .......... .......... 432 TTTTGAGTAA ATATCTACCG TTTAATAGAC GTACATATTT TATTTTTATT TAAAGTAAAA 188476 .......... .......... .......... .......... .......... .......... 432 TATGGATTAA TGAATGACAT TATAAAAAAA AAAAAATTGA AGCAATACTT TTAGCCTAAG 188536 .......... .......... .......... .......... .......... .......... 432 CTCTATTCAA CATTATCAAT GAAAATTTAA TACCATTCAA ATTTAAACAA TATACATTGA 188596 .......... .......... .......... .......... .......... .......... 432 TTTGCTTACC AATAATAGTG CTTGTCATCT CAAGTAAGTG ATAACTCCCT TTCTCGTAAA 188656 .......... .......... .......... .......... .......... .......... 432 ATATATTTTA AGATAAAATT ATAATTTTTT ATTTATGGTA ATTATTAATA TGATATTAAA 188716 .......... .......... .......... .......... .......... .......... 432 ATTAATTTGA CAACACATAT TACTTGTTTT TATAGATTTT CAATTTTACT TGTGTCTGAA 188776 .......... .......... .......... .......... .......... .......... 432 TATTGTCTTG TGTGAAAACA TCACATGTTT TCTGCTTGAA TAGAATCTTA GTACATTGTT 188836 .......... .......... .......... .......... .......... .......... 432 GTTTTAATAT TGTTGTGTGA ACAAATCACG ATTTACTCAT TCGAGAGAAA TCTTAAAATG 188896 .......... .......... .......... .......... .......... .......... 432 CTTAAGATTT TTTGTTTAGT TAATTATGAA TTATCTCTCT TATTTTCTAA ACCACGATAT 188956 .......... .......... .......... .......... .......... .......... 432 TGTTATGAAT TAGTGACTAA TCTTGAAATA GTAATGCATA TTAGAGAAAT AAAAAAAAGC 189016 .......... .......... .......... .......... .......... .......... 432 TCATGGAAAT TTAAAAATTT ATATTTTATC ATTTAGGATG TATTTGGTAC GAAAAAAAGT 189076 .......... .......... .......... .......... .......... .......... 432 TATTTTTTTT TATATTTATA TCCAAAATCA GTAAATATTA TCCCTCTAGT TATTTATATC 189136 .......... .......... .......... .......... .......... .......... 432 AAATTTATTT AGTGTGAAAA CTAGATATAC ACACAACTGT TAAGATTAAA TTGATTAATA 189196 .......... .......... .......... .......... .......... .......... 432 CAACAGTAAA GCATAATTAA TAGTGTTAAG TAAGAAAATA TGATGTATAC GATGCAATTA 189256 .......... .......... .......... .......... .......... .......... 432 TTCTTTTTAA CTAAAGATCT TGAGTTCGAT TCATAATAGA AAAAATTTTG ATATATAATA 189316 .......... .......... .......... .......... .......... .......... 432 TTTTAATTAA TCTCCATTAG AAAATATCAT GCATTTAAGA CACCAAAACA CAAAAA 189372 ||||||| |||| .......... .......... .......... .......... ...CAAAACA GGAAAA 445 hqPGS_C01HBa0216G16.1+_SGN-U337473- (185059 185454,185561 185591) ******************************************************************************** EST sequence 13 +strand 1200 n (File: SGN-U337472+) 1 GAGAGACAAC GTAAGAGAGG GGAAACGGGA ATCACGCGGT GGCGGCCGCT CTAGACTAGT 61 GGATCCCCCG GGCTGCAGGA ATTCGGCACG CCGTAAACTT CNNTCAGCTT TCCNTNNCAC 121 ATTTCTCTTT CCTTTAAAAG AATTGGCCGG TTCCATTGTC CCGATACAGG CTGAAGAACT 181 AAAGGTTTGA GGTGAAGAGA TGTGCAGATA GCTGAAGAAC TAGTTCGCTT TTCTGATACA 241 AGCTGAAGAG TTGATGAACT GAGCTGAAGA GTTGAACGAT TCCTTAAAGA AAGAAATGTA 301 TACTGTTGGG TTGTTGACAT GATGATGAAC TGAAGCTAAT TAGTCTCTCC GTCACACTGT 361 TCTCTCAAGT GTCTCATTGA AGAACACAAT TTCAAAGAGA TTTTGTTGGA TTTGGGTTTA 421 TCATGTTTTG CTGAGAGGAA ACTAAGATTA TGCAGACATC AAAGTCAAGG TATTTCTTAT 481 CTCTTAACTG TAAAATGACT ATATTTCATC CTTGAAATAA TGACATACAA TGTCATACAA 541 TTTTGTAGTT ATTATTATGT ATTTATTAGA ATCAAGAATG GTAACAAGGT ACTCGAAACT 601 CGAAACTCAC AATAATTCTG ATCATCCCAT AACATATGAT TCTGATTCTG ATTATTTGAA 661 GGCTCAGGGT GAATTATTAA GGTGTGTGCT TCATTCTCTT GAGCTTCCTC ATCCTGAAGT 721 TTTTTATCCA TGTTTTTTTC TAAAAAATAG CTACCCTTAG CAATAGAGGG TATTGTTTTT 781 CTGTGTAGTA TTGATCAAAA ATGTCCAATA TGTGGCTTCA TTTAGATAGT TAGTTAGGTG 841 TTTAGTTTTC TTCCCCTCTA ATTATGTTTG CACCCAAAGA ATTCAAACCT ACAAATGAAG 901 TTGGCGGGAG CCTTTGTACC TAAAGGTTGC CTTTCCGGGG ACTGCTGGAA TTTTCCTTCC 961 CTAACTCCTG AAGATTGAAG GAAATAATTT CCCCGTAATG GGTCCTTCTT TTTACCTGGC 1021 TGGAAATTTA ATTTAACGGA CTGCCATTTG TCCCATGAAT AATAAACCAG TTTCTGGCAC 1081 AGTTTGTTTG GGCCATTTTA CAATTTTAAA AACAAATGGG GGGGGAAGAA GGGGTTTTTA 1141 ATATTCCTTT TGGAAAACCT CACAAAAATT TCCACTTTTG TAACTTAAAC CGGGGCCATT Predicted gene structure (within gDNA segment 178224 to 188341): Exon 1 179189 179212 ( 24 n); cDNA 335 358 ( 24 n); score: 0.625 Intron 1 179213 180991 (1779 n); Pd: 0.980 (s: 0), Pa: 0.000 (s: 0) Exon 2 180992 181001 ( 10 n); cDNA 359 368 ( 10 n); score: 0.700 Intron 2 181002 181882 ( 881 n); Pd: 0.729 (s: 0), Pa: 0.995 (s: 0) Exon 3 181883 181913 ( 31 n); cDNA 369 396 ( 28 n); score: 0.516 Intron 3 181914 183287 (1374 n); Pd: 0.683 (s: 0), Pa: 0.942 (s: 0) Exon 4 183288 183316 ( 29 n); cDNA 397 424 ( 28 n); score: 0.621 Intron 4 183317 184247 ( 931 n); Pd: 0.000 (s: 0), Pa: 0.986 (s: 0.92) Exon 5 184248 184825 ( 578 n); cDNA 425 1018 ( 594 n); score: 0.824 Intron 5 184826 185560 ( 735 n); Pd: 0.000 (s: 0.52), Pa: 0.999 (s: 0) Exon 6 185561 185571 ( 11 n); cDNA 1019 1028 ( 10 n); score: 0.818 Intron 6 185572 186345 ( 774 n); Pd: 0.000 (s: 0), Pa: 0.977 (s: 0) Exon 7 186346 186353 ( 8 n); cDNA 1029 1036 ( 8 n); score: 0.750 MATCH C01HBa0216G16.1+ SGN-U337472+ 0.824 691 0.576 C PGS_C01HBa0216G16.1+_SGN-U337472+ (179189 179212,180992 181001,181883 181913,183288 183316,184248 184825,185561 185571,186346 186353) Alignment (genomic DNA sequence = upper lines): GCTAACTAGT CTTGGCGGGA TAAGGCAAGT GTCATCATGT CCATTTTTAG GCAATAACTG 179248 ||||| |||| || || | | GCTAATTAGT CTCTCCGTCA CACT...... .......... .......... .......... 358 AAGCATAGAT AAGTTCATTA GTGTTGCAAT ATAATCTAAA CCATATAATC TAACATTTCC 179308 .......... .......... .......... .......... .......... .......... 358 CCCATAAAAT TATCAGTTTT TCTCAAAAGA AATTGTCAGA ATGAAAAAGA GATCATAAGT 179368 .......... .......... .......... .......... .......... .......... 358 TACAAAATAA AAATCATTAT AATAGGCATC AATCATGAAT ATTCTCCTTT GTTGAAATTG 179428 .......... .......... .......... .......... .......... .......... 358 TCTCACTCAC ATAAATAAAT TAAACTAAAT TAAAAGATGG AAAGTAAAAA TAATGTATTA 179488 .......... .......... .......... .......... .......... .......... 358 TAAGACAACA TTTCTGTTGC ATCTTCAAAA GAAAGACAAC ATTTCTGTTG CATCTTCAAA 179548 .......... .......... .......... .......... .......... .......... 358 AGAAATTTTT AAATCCCTTT AGCCAACTCA CTTTAATTGT TACCTCGAGT ATTTTCTGAA 179608 .......... .......... .......... .......... .......... .......... 358 AAAATATATA GAAAAATCTA TCCAAAATAC GAATGATATA TATATATATA TATATATCAA 179668 .......... .......... .......... .......... .......... .......... 358 AGTGAAATAT AAATGAATAT TTTCTTATCA AAATTTGGAT TAGACTCCAG AAGGCACAAG 179728 .......... .......... .......... .......... .......... .......... 358 AAAGGATCAG TTGGTTGATC ATTCTCAACA TATCTTGGAT TTATATGGAT TACTACAAAT 179788 .......... .......... .......... .......... .......... .......... 358 TAATTAGCAT AATAAATTTT GCACTTTAAT GCATTAAAAG AAACATATAA TTTTTTTTAA 179848 .......... .......... .......... .......... .......... .......... 358 AAAAATAATA TATATTATTC AAAATTTTTA TATATCTAAC AACTTAATAC AAAAAATACT 179908 .......... .......... .......... .......... .......... .......... 358 AATGTATAAA GTGAAATAAA AAATATATGA TTAAGTTATT TGTGGCTCTC TTACTACGTT 179968 .......... .......... .......... .......... .......... .......... 358 ATTATTCAAT GGTGCATTTG AAAATTGATG TTATATGTCC AAATATTCAT TTTCAATGGC 180028 .......... .......... .......... .......... .......... .......... 358 TTCTATCTGC ATCCATATTA ATAGAATAGT ATAAGAATAA TACAAATATT TATGATGTAT 180088 .......... .......... .......... .......... .......... .......... 358 TATTGAACAT TTATATAAAC TAAAATATTC ACACTAAGAT AATTATTTTA AAAATAAATT 180148 .......... .......... .......... .......... .......... .......... 358 TGCATAAATT TTAGTTTATG AAATTATTAA TATAACTTAG AGATTAGATA TATACCCCTG 180208 .......... .......... .......... .......... .......... .......... 358 AATGTGAAGA GGATCCACGA GATGATCCTG GCTTTCTTCC TCGTCTGTAG TTTTCCTGCA 180268 .......... .......... .......... .......... .......... .......... 358 TTTGTTCAAC ATGAAAATTT AAGTTTCCAG TAGTGCTAAA AATCTTTGAA GGGACTTTTG 180328 .......... .......... .......... .......... .......... .......... 358 TCATTTCTGT TGCTTGGTAT GATTTTTCTC AAGGCAAAAA GAAATTTAAA ATAATAAATT 180388 .......... .......... .......... .......... .......... .......... 358 TTTGTACCCT TGAACCACAA GCTCGTCCTG TTGAAATTGC CGAATAAATG ATTGGTTCAT 180448 .......... .......... .......... .......... .......... .......... 358 TAGAATTGAT ATTATATCTC TAATAATAAA TCACTACACC ATTATAGGCC CACGACCACA 180508 .......... .......... .......... .......... .......... .......... 358 CTAGATATGA GCAACACTTA AAAAGTGTTG CCTAAAATAT TTTTGGGAAC ACTTTTAAAA 180568 .......... .......... .......... .......... .......... .......... 358 TGTAGCCTAA ATTTTTAACT TTTGGCAACG ACAATATTGG CAACACTTGT AAAGCGTACT 180628 .......... .......... .......... .......... .......... .......... 358 CTTTAATGGC ATTGGTTACA CTTTATAAGC GTTGTTATAA TATGAAATAA ATGACAACAT 180688 .......... .......... .......... .......... .......... .......... 358 CCATTTACAT ATATGACCAC ACTTTTAAAG TGTCCTATTT TTTACAATTG TAAAAACAAC 180748 .......... .......... .......... .......... .......... .......... 358 ACATTAGAAG TGTGGCCTAA ATTTTTCACT AAAATTTTAT ATTCCCTCCA ACATTTTAAA 180808 .......... .......... .......... .......... .......... .......... 358 CTCTCCCTCC CATATTTTAT TGGCCAAAAA AAATATTAAT AAAACATTCA TAAAAACTTC 180868 .......... .......... .......... .......... .......... .......... 358 TTTCTCTGTC TTCTCTCCTG GAACACGTTT AACTTTTTTT TCTCAAAAAG TAGCTGAAGA 180928 .......... .......... .......... .......... .......... .......... 358 ACGTAGCTGA AGTGAAGATC GAAGAGAACA AGCTGAAGAA CGTAGCTGAG CTGAATAACT 180988 .......... .......... .......... .......... .......... .......... 358 TAGGTTAACT AAAGTACTGA TCAACATCTG AGCTGAAGAT TGTCTTCTCT AGAACATGAT 181048 ||| || || ...GTTCTCT CAA....... .......... .......... .......... .......... 368 TTTCTCAAAG GGATGAAATG CTGAAGCTTA AGAACTAAGG ATAGAAGAAT TGAGGATCGA 181108 .......... .......... .......... .......... .......... .......... 368 AGAACTAAAG AGTGGAATCT GAAAATCTTA AGAGCTTAGC GGAAGATTTC TCCGTTTCCG 181168 .......... .......... .......... .......... .......... .......... 368 ATTTTGTCCA GTGTACTTAC AAATTATGTA CAGTTGAGTT TCCTTCTTAT TTTCTACTAA 181228 .......... .......... .......... .......... .......... .......... 368 TAATCTAGCA CTAAAACAAT CTTCTTGTCA ATTGATTGAA TTTTTGTTTT GTATTTAGAA 181288 .......... .......... .......... .......... .......... .......... 368 GGAATTAATT AATTCGGGGG TTCTTACAGT TGAAATTCCA AAGTAGGGGA AGAGAGTTTC 181348 .......... .......... .......... .......... .......... .......... 368 GACAATCTGA ACATCAAAGT TAGCCCTAGG AATCTCGAGT AGACAAGAAA GAGAGAATTA 181408 .......... .......... .......... .......... .......... .......... 368 ATACTCGAAG CATTTGAGTC TGTAAGTATA TATCTTTGTG TTTGTATTGC ATTGTACCTC 181468 .......... .......... .......... .......... .......... .......... 368 TATTCCGTTT CTTATGCAAC AATTTCTGCG TTACATTGTT TGTGTCTTTT GTACCAGCAA 181528 .......... .......... .......... .......... .......... .......... 368 ATTGTGCAAG TAGTTAGTAA AAGTATATCC TCAAGGTTCA CTATTTACTA TTGTTCTTTA 181588 .......... .......... .......... .......... .......... .......... 368 AGGTGTGTGT TCCAGTAGCT GAGATTTGTT GCATCTCAAA TTGAATATAG AAGTTTGAAA 181648 .......... .......... .......... .......... .......... .......... 368 GAAACTTAAT AACGTTGTGT GGTATCAAAA ATTAGTTTGT TCAAGAAGAT TTGGATTTGT 181708 .......... .......... .......... .......... .......... .......... 368 TTCCTTCCGT AATGAGCAGG TACTAAGATG TCTTTGATCA ACTTTCTGAT GTAAAACTTC 181768 .......... .......... .......... .......... .......... .......... 368 TTCTCGTGTG CATTCCATCC AATATAGGAA AAGAAAAAAT TAGTAGTGCC TATCTTGTGC 181828 .......... .......... .......... .......... .......... .......... 368 TTTTCTATGA ACCATGTCAA CCTTTTTATC CTTTCTTTTG GAATGCTTGT GCAGGAGGTG 181888 | || .......... .......... .......... .......... .......... ....G-TGT- 372 CAAAATGCAA TAAAAGACTT GAATGGTAGG AACAAGTGGT CTAGTTTTTC AATACATCGA 181948 | | || || || | | || | CTCATTG-AA GAACACAATT TCAAA..... .......... .......... .......... 396 TTTAACATGA TTTATACTAG TTTTTCAATA CACTGATTCA ACATGATTTA TACACTTATA 182008 .......... .......... .......... .......... .......... .......... 396 TAAAATTGTT TATTGAGATT TTGATTCTTA ATAGAGAACT TTTCCAACCT GTCTTCTATT 182068 .......... .......... .......... .......... .......... .......... 396 GAGGAAAATC TTGATTGATT ACTGATTCTG TTCTTGTTCT ATTTGGAATT CTATAGCATA 182128 .......... .......... .......... .......... .......... .......... 396 TGACAAACTA AGATTATTTT CTTGTTTTTT CGTGCGGGTA TCTTCATTCT GTCACTCACT 182188 .......... .......... .......... .......... .......... .......... 396 ATGCTTGTCA TTCACTCGCA AAGCTAAGCA GATCATTGCA TCTCCTCCAG TCTTCATCAC 182248 .......... .......... .......... .......... .......... .......... 396 AATCTAGTTT CACTAGGTGC TCTCCTATAC TATAGTTCAA TCTTTTCTTT TTACTATTTT 182308 .......... .......... .......... .......... .......... .......... 396 TGTGAACCAT GCATGTAATG AATGTTGTGT ACCCGACAAT TTATATAATT CTCTATGTTT 182368 .......... .......... .......... .......... .......... .......... 396 TAGAAATACA AGCTATGACA TTTCATTTTC TCCTAGAGAT CATTTTCAAA TGGATTAGAA 182428 .......... .......... .......... .......... .......... .......... 396 CTTGGTTTCA TGTCATGATG TTGCATCATT ACTTGGTTGT TTTACTTCCT AGATTAGTCA 182488 .......... .......... .......... .......... .......... .......... 396 GCTTGATCAA AGATAGGCTT GGTTTTCTAT CTCATCTAAA TTGATCTTTA AGTCCGTGTT 182548 .......... .......... .......... .......... .......... .......... 396 TAATCAACTT AAAGATGACA TTCTCTATCT TTTATTTTGT GGTTTTCAAT GTATCTGTCG 182608 .......... .......... .......... .......... .......... .......... 396 CTAATGTCAA TATTGAGATA ATTTCAGTTT AAAGTTCATG TTTAGTTTTG TGAGATTTTT 182668 .......... .......... .......... .......... .......... .......... 396 ATCCTTGTTC GGATAGTGGC TGAGCATGCT ATTTTTGAAT TTACATCTTT ATTTATTTGT 182728 .......... .......... .......... .......... .......... .......... 396 GCTCGTAATT TTGTGAATCA CTAATTTTGA TACCTCATGT CAAGTAGGAA GTCAGTTTCT 182788 .......... .......... .......... .......... .......... .......... 396 TTCTGTTGGT ATTTCCCAAA TAATGATAAC CCATTTAGGT GATTAAATTT CCTCTAGTTT 182848 .......... .......... .......... .......... .......... .......... 396 TCATTTATTT GTACAAGTTT CCTTAGTTGT AGTCCTTGTT TTATACTTTG AATCGTCTGT 182908 .......... .......... .......... .......... .......... .......... 396 ATTGTTTGCC TTTTTTGCAT ATCAATTCGT CAATAAAATG ATAGTAAGTT GGAATCGTCT 182968 .......... .......... .......... .......... .......... .......... 396 GTATTATTTG CCTAAAATCC TAGATGCTAA CTTCCTTCTG TTACTAAACA TCAAATTATT 183028 .......... .......... .......... .......... .......... .......... 396 TTCAAAGCAT TGGCAGAATC AGTTTATGAA TGTATTTTTT CTCTTTTTTT GTTTTTGGCT 183088 .......... .......... .......... .......... .......... .......... 396 TGTTACTGCG TCTTTTATTG TATATTTGGT TGCTGATAGT TGAGGTATTT TATTTGTTAC 183148 .......... .......... .......... .......... .......... .......... 396 TTAAGTCTTT TCTCTCTCTT TCTCTCTTCT GGAACGTCTC GACTGTATTT TCCTCGATTT 183208 .......... .......... .......... .......... .......... .......... 396 TTCCTAGTTT TCTTTATTCA AATCATCCTT TATTTTGTTT GTTGATGTAT TTCCTTTATT 183268 .......... .......... .......... .......... .......... .......... 396 GATGTATCCA ATTGTGAAGG TGGTTTTCTT GTTCTTGTTG ATTATTAGTT TGACCATGAA 183328 | | |||| || | ||| | |||| | .......... .........G AGATTTTGTT GGATTTG-GG TTTATCAT.. .......... 424 AAAAAGATCA TTATAGTTAT TATGAGTAGA AATAGTAGAG TTAAGTGTCT TACATGATTA 183388 .......... .......... .......... .......... .......... .......... 424 TTTCTTCCCA AAGTGTGTCA GTTTTGCCTG TAGTTCTCCT TATTTAAAAC TTTCCATTGC 183448 .......... .......... .......... .......... .......... .......... 424 TCATCTCATA GCTCATTTGC CTTCTCCATA TTTGGTTGTT GATTTGTGTG TGTAGTTGTT 183508 .......... .......... .......... .......... .......... .......... 424 GCTCCAGCTG GCTATTTTCT TGGTAGTGAT AATAGTAGTC GCCAGGTCAA TAGGGATATC 183568 .......... .......... .......... .......... .......... .......... 424 ATTTTGAGCC TGATTTTTTC TTAATCAAGC AGAAAATGAT TGGATAATAG TGTAGGAAGA 183628 .......... .......... .......... .......... .......... .......... 424 TGTTTCAGCC TTGGGAGTAG ACAATGATTC ATCATGTTCT ATGTTTTTGT AAATTTGGAG 183688 .......... .......... .......... .......... .......... .......... 424 TACTTTGATC AATGTGTGTC ATCTTCCCCC TTTTCTACAT TGATATTGGA GATATAATGA 183748 .......... .......... .......... .......... .......... .......... 424 TGACTAACGA ACTGAAAAAG CTTATATGCT TTAATATATT TCTGATTTTT TATGTTTTCT 183808 .......... .......... .......... .......... .......... .......... 424 TATTTTGTTT ATCCTTATCA ACTCAATTTA TATGCTTTAT TATATTTCTG TTTTTTATGT 183868 .......... .......... .......... .......... .......... .......... 424 TCCAAGCATA TCATATGGAT CTCGATTAAT AGAAATACTT CACAGAATCT GCAATCTACT 183928 .......... .......... .......... .......... .......... .......... 424 AGAATATATA GTAAAAGATA TGTTTTCTAT AAAATTATTT TTAAACTAGT AACATTTTTA 183988 .......... .......... .......... .......... .......... .......... 424 TTTCAAATAG TACTTAGGTA GTACTGAAAA ACATTTGTAT TACATTGCAG TTGCCTAGTA 184048 .......... .......... .......... .......... .......... .......... 424 AAGTTGCAAT GTAAGAAGAG ATGTCTCACT GTTCATTAGC CTTCCGAAAT AGCATGCTAC 184108 .......... .......... .......... .......... .......... .......... 424 AGTTTTTATT TTTCCTCTAA AAGAAATAAA ATCTCTTGTT GTCTGTATAA AGATACTATT 184168 .......... .......... .......... .......... .......... .......... 424 TCTGTAATTT TTTACTTTTG CATACGAACA CTTCGATCAA ACTTTTTTCT AAACCATGAA 184228 .......... .......... .......... .......... .......... .......... 424 ATATTCTCTG CTATTTCAGG TTTTGCTGAG AGGAAACTAA CATTATGTAG ACATCAAAAA 184288 | |||||||||| |||||||||| |||||| || ||||| ||| .......... .........G TTTTGCTGAG AGGAAACTAA GATTATGCAG ACATC-AAAG 464 TCAAGGTATT TCTGATCTCT TAACAGTAAA ATGACTATAT TTCATCCATG AAATAATGAC 184348 |||||||||| ||| |||||| |||| ||||| |||||||||| ||||||| || |||||||||| TCAAGGTATT TCTTATCTCT TAACTGTAAA ATGACTATAT TTCATCCTTG AAATAATGAC 524 ATACAA--T- -T----TT-- GTAGTTATTA TTATGTATTT ATTAGAATCA AGAATAGTAA 184398 |||||| | | || |||||||||| |||||||||| |||||||||| ||||| |||| ATACAATGTC ATACAATTTT GTAGTTATTA TTATGTATTT ATTAGAATCA AGAATGGTAA 584 CAAGGTACTC GAAACTCAAA ACTCACAATA ATTATGATCA TCCCATAACA TATGATTCTG 184458 |||||||||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||||||| CAAGGTACTC GAAACTCGAA ACTCACAATA ATTCTGATCA TCCCATAACA TATGATTCTG 644 ATTCTGATTA TTTGAGGGTT CAAGGTGGAT TCTTAAGGTG TGTTCTTCAT TCTCTTGAGC 184518 |||||||||| ||||| || | || |||| || | |||||||| ||| |||||| |||||||||| ATTCTGATTA TTTGAAGGCT CAGGGTGAAT TATTAAGGTG TGTGCTTCAT TCTCTTGAGC 704 TTCCTTATCC TGAAGTTTTT CATCTATGTT TTTTTCTAAA AAATAGCTAC CCTTAGCAGT 184578 ||||| |||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||| | TTCCTCATCC TGAAGTTTTT TATCCATGTT TTTTTCTAAA AAATAGCTAC CCTTAGCAAT 764 AGAGGGTATT GTTTTTCTGT ATATTATTGA TCAATAATGT CCAATATGTG GCTTCATTTG 184638 |||||||||| |||||||||| || |||||| |||| ||||| |||||||||| ||||||||| AGAGGGTATT GTTTTTCTGT GTAGTATTGA TCAAAAATGT CCAATATGTG GCTTCATTTA 824 GATAGTTAGT TAGTTGTTTA GTTTTCTT-C CCTATAAATA TGTTTGCACC CAAAGAATTC 184697 |||||||||| ||| |||||| |||||||| | ||| ||| || |||||||||| |||||||||| GATAGTTAGT TAGGTGTTTA GTTTTCTTCC CCTCTAATTA TGTTTGCACC CAAAGAATTC 884 AAACCTACAA ATG-AGTT-G CTGGAACTTT TGTA-CTAGA TGTTGCATTT CCAGTGACAT 184754 |||||||||| ||| |||| | | ||| | || |||| ||| | ||||| ||| || | ||| | AAACCTACAA ATGAAGTTGG CGGGAGCCTT TGTACCTAAA GGTTGCCTTT CCGGGGAC-T 943 TCTGTAATTT TACTT-CATG ATTGCTGAGT ATTG-ATG-A ATAA-TTCTC AGT-ATGTGT 184809 ||| ||||| | ||| | | | | |||| |||| | | | |||| ||| | || ||| || GCTGGAATTT TCCTTCCCTA ACTCCTGAAG ATTGAAGGAA ATAATTTCCC CGTAATGGGT 1003 -CTTCATTTT ACTACTGTAA TTTTATTTAC TGGTTGCATT TGTCCTTGAG TAATATCAGT 184868 |||| |||| || ||| CCTTCTTTTT AC--CTG... .......... .......... .......... .......... 1018 TCTGTCAAGT TGTTTTGGAC ATTCAAAATA TGAAAAGAAT GTGGTGAGAG TGTATGATAA 184928 .......... .......... .......... .......... .......... .......... 1018 TAATTCTTCA TAGTTCTGCT CTTAAACCAG AACATAGCTT CATATTTTCA GATGTTTCAA 184988 .......... .......... .......... .......... .......... .......... 1018 ATTTCTGTCC ATATTTGCTT CTAAGTGAGT AAGTTTGTAA CAATTTAAAG TTCAATAGAT 185048 .......... .......... .......... .......... .......... .......... 1018 CCATTTCCAG CATGCTTCAA TATATTTATA GTTCCGTCTT GTTTCGGTTT TGGATAGCAT 185108 .......... .......... .......... .......... .......... .......... 1018 TCCATTATTT ATTTGTTTCT TGGAACCTAG AAGCTAATGG ATTCTTTGGT TTATAGTGCT 185168 .......... .......... .......... .......... .......... .......... 1018 AATCATTCGT AGTACTCATC GATACTACAT TAAGTAGCCA ATTTGTTTAT ACTACTAGGA 185228 .......... .......... .......... .......... .......... .......... 1018 TTTATTCTTT TGATGAACTT GTTTGGATCA GTAGTTTGTT TTTAGAAGAA ATTTTTATTT 185288 .......... .......... .......... .......... .......... .......... 1018 TGTGTTTAGA AGAAATTGAT TACTTTTGGG GCTCTTACAA CTGAAATTTA AAATTGATTA 185348 .......... .......... .......... .......... .......... .......... 1018 ATTGTTAAAT TTCATAATTT TGTGTTCTTT ATTAATAGAT TAGATTTGTT TACTAGAGGA 185408 .......... .......... .......... .......... .......... .......... 1018 ATTGATATTC AAGCAGTTAA CGTTGTTATC AATTCTGATT TTCCTAAGAA CACAGAAACG 185468 .......... .......... .......... .......... .......... .......... 1018 TATTTGCACA GGGTATGTAT AACATATATT TGATCTTGCT TATTGGCTTA TATATTTTTT 185528 .......... .......... .......... .......... .......... .......... 1018 TGCTATTTCA TCTTTGGTAA TTTATTTTGC AGGTTGGACA ATTAGGGAGA TTTGTGAAGT 185588 | |||| | ||| .......... .......... .......... ..GCTGGA-A ATT....... .......... 1028 TTGGTTTAGT TGTTAGCCAT GTTACTTTTG AGGATCACTT CACTTTGTAT GGACTAATTA 185648 .......... .......... .......... .......... .......... .......... 1028 TGTTCATTTA CTTTGTACTA GATCATTAAG CTCTATGTGT TGATTTCTAC TACTACTAAA 185708 .......... .......... .......... .......... .......... .......... 1028 AGTATATATC TGATTGTGAC ATATAGAATT GAACAAGAAC TAGGAATAGA AATCAAGAAA 185768 .......... .......... .......... .......... .......... .......... 1028 ATCCCTTCAC AGATAGATTA AGCTATATAT AAAGTCTTCT ATGTTAGCTC CCCTTATTTT 185828 .......... .......... .......... .......... .......... .......... 1028 TCTGAATGAG TTTTTGATGA AGTAAATTGA CTTGTTTTGT AGTCCTGGTA GGTTCTGATT 185888 .......... .......... .......... .......... .......... .......... 1028 AGACTTAAAA GCTAGTTCAA CTTGCTTGCT TTAGATCATT TTAATGGTTT TCTTCCATTT 185948 .......... .......... .......... .......... .......... .......... 1028 TTAGATTTTG GAAGGCTACA TAACAATTGA AGTAAAATAT AATGAACTCT TTAAAATTAG 186008 .......... .......... .......... .......... .......... .......... 1028 GTTTCCAGTA GACCTTATCA CAGGATTCTG TTAAGCTTTG AACACTTCAA GATTCTTGAA 186068 .......... .......... .......... .......... .......... .......... 1028 AAATTTCCTT ATTCTTGATT AGTTCATTAA ATTTTGTCTA TCCTATAATT CACTGCCTTA 186128 .......... .......... .......... .......... .......... .......... 1028 TTTAATTCTT TCTATCCTAC TAATTTTACT TATTTTCCCT TATAACAAAA ATCAACATTC 186188 .......... .......... .......... .......... .......... .......... 1028 AAAAACATTT GTGGAGGATT CAAAGTTTGA TTTGGCATAA CACAAGTGTC AGGACTACGT 186248 .......... .......... .......... .......... .......... .......... 1028 AAGAAAATAT TATCATCTCA TAACACCTGA TTTTGGTAAC TTAATCATGA ATTTGATGAT 186308 .......... .......... .......... .......... .......... .......... 1028 TCTTATTGAA ATATCAAATA TTTATATCTT CTTATAGGAA TTCAA 186353 || || || .......... .......... .......... .......TAA TTTAA 1036 hqPGS_C01HBa0216G16.1+_SGN-U337472+ (184248 184825) ******************************************************************************** EST sequence 11 +strand 1227 n (File: SGN-U335893+) 1 TCACCACGCG GTGGCGGCGC TCTATAATAG TGGACCCCCG GGCTGCAGGA ATTCGGCACG 61 ACCCATTAAG CAGCTGATCT GCTTCCTACC TGCAAATCGC CAGACTTTGA TGTTTTCTGC 121 AACATTTCCT GTTACTGTCA AAGACTTTAA AGAAAGATAT TTGCACAAGC CATATGTTAT 181 CAACCTCATG GATGAACTTA CACTCAAGGG TATAACACAA TTTTATGCTT TCGTTGAAGA 241 AAGACAGAAG ATTCACTGCC TTAACACTCT CTTCTCAAAG CTTCAAATTA ACCAATCAAT 301 TATTTTTTGC AACTCTGTAA ATCGTGTGGA ACTTCTTGCC AAAAAGATTA CTGAGCTGGG 361 CTATTCATGC TTCTACATTC ATGCTAAGAT GCTTCAAGAT CATAGAAACA GGGTGTTTCA 421 TGACTTCCGC AATGGTGCCT GCAGGAACCT TGTTTGTACT GATTTGTTTA CTAGAGGAAT 481 AGATATTCAA GCAGTTAACG TTGTTATCAA TTTTGATTTC CCTAAAAACT CAGAAACGTA 541 TTTGCACAGG GTTGGACGAT CAGGGAGATT TGGACACCTT GGTTTGGCTG TTAGCCTGAT 601 TAATTTTGAG GATCGCTTCA ATTTGCATAG AATTGAACAA GAATTAGGAA CCGAGACCAA 661 GCACATCCCT CCACAGATAG ATCAAGCTAT ATATTGTCAG TGAAACCCGC TAGCTGTGGT 721 TGATGGAGCT GCAACTGGAC ATGCCAGATC CCACTTTCCA AAGGGGGCAA ACCCCCAGCT 781 CAAAAGAGGA ACTTGCCATA ATTCGGGCAA GTGCAACCAA CAAAACTGCG TATTAAGACT 841 GTCAGCCTTG CAAATGGACT TAAACAAACC AATTGGCTCC ATAATTGACT ACTCCTATCC 901 GGCCCCCCGA CACACTAGCA CCTAGCCCTT GGGGGCCATC CGGAATCAGC AAAAAAACTG 961 GGGACTAGGA ACGTTCCTCC CGTCGTGCAA AGCAAGGCCC GGTGGGGAAC GCGCCACAAT 1021 GAGATTAAAC CACGCTCTTC CAAACTGCCG TTGCAGGGGC GCAGCGACCC CAGAGGTTGG 1081 GCGCAAAAAG ACACAAGAGA AAGCGGGCCC CTCTCGACCG CAGTGTGACA CGATTCAAAC 1141 ACGAACCGAC CAACAGAGTA GCGCCCCTAA TTTCCAAGTC GAAACAAAGG CGCATAACAT 1201 ACACCTACCG GAAACATACC ACTGCCC Predicted gene structure (within gDNA segment 180191 to 192842): Exon 1 185391 185480 ( 90 n); cDNA 461 550 ( 90 n); score: 0.944 Intron 1 185481 185560 ( 80 n); Pd: 0.992 (s: 0.92), Pa: 0.999 (s: 0.76) Exon 2 185561 185640 ( 80 n); cDNA 551 630 ( 80 n); score: 0.788 Intron 2 185641 185734 ( 94 n); Pd: 0.000 (s: 0.80), Pa: 0.926 (s: 0.84) Exon 3 185735 185796 ( 62 n); cDNA 631 692 ( 62 n); score: 0.855 Intron 3 185797 189532 (3736 n); Pd: 0.000 (s: 0.82), Pa: 0.383 (s: 0) Exon 4 189533 189562 ( 30 n); cDNA 693 724 ( 32 n); score: 0.500 Intron 4 189563 191107 (1545 n); Pd: 0.000 (s: 0), Pa: 0.338 (s: 0) Exon 5 191108 191132 ( 25 n); cDNA 725 749 ( 25 n); score: 0.640 MATCH C01HBa0216G16.1+ SGN-U335893+ 0.866 287 0.234 C PGS_C01HBa0216G16.1+_SGN-U335893+ (185391 185480,185561 185640,185735 185796,189533 189562,191108 191132) Alignment (genomic DNA sequence = upper lines): GATTTGTTTA CTAGAGGAAT TGATATTCAA GCAGTTAACG TTGTTATCAA TTCTGATTTT 185450 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| || |||||| GATTTGTTTA CTAGAGGAAT AGATATTCAA GCAGTTAACG TTGTTATCAA TTTTGATTTC 520 CCTAAGAACA CAGAAACGTA TTTGCACAGG GTATGTATAA CATATATTTG ATCTTGCTTA 185510 ||||| ||| |||||||||| |||||||||| CCTAAAAACT CAGAAACGTA TTTGCACAGG .......... .......... .......... 550 TTGGCTTATA TATTTTTTTG CTATTTCATC TTTGGTAATT TATTTTGCAG GTTGGACAAT 185570 ||||||| || .......... .......... .......... .......... .......... GTTGGACGAT 560 TAGGGAGATT TGTGAAGTTT GGTTTAGTTG TTAGCCATGT TACTTTTGAG GATCACTTCA 185630 ||||||||| || | || ||||| | || |||||| | || ||||||| |||| ||||| CAGGGAGATT TGGACACCTT GGTTTGGCTG TTAGCCTGAT TAATTTTGAG GATCGCTTCA 620 CTTTGTATGG ACTAATTATG TTCATTTACT TTGTACTAGA TCATTAAGCT CTATGTGTTG 185690 |||| || | ATTTGCATAG .......... .......... .......... .......... .......... 630 ATTTCTACTA CTACTAAAAG TATATATCTG ATTGTGACAT ATAGAATTGA ACAAGAACTA 185750 |||||| ||||||| || .......... .......... .......... .......... ....AATTGA ACAAGAATTA 646 GGAATAGAAA TCAAGAAAAT CCCTTCACAG ATAGATTAAG CTATATATAA AGTCTTCTAT 185810 |||| || | |||| | || |||| ||||| |||||| ||| |||||| GGAACCGAGA CCAAGCACAT CCCTCCACAG ATAGATCAAG CTATAT.... .......... 692 GTTAGCTCCC CTTATTTTTC TGAATGAGTT TTTGATGAAG TAAATTGACT TGTTTTGTAG 185870 .......... .......... .......... .......... .......... .......... 692 TCCTGGTAGG TTCTGATTAG ACTTAAAAGC TAGTTCAACT TGCTTGCTTT AGATCATTTT 185930 .......... .......... .......... .......... .......... .......... 692 AATGGTTTTC TTCCATTTTT AGATTTTGGA AGGCTACATA ACAATTGAAG TAAAATATAA 185990 .......... .......... .......... .......... .......... .......... 692 TGAACTCTTT AAAATTAGGT TTCCAGTAGA CCTTATCACA GGATTCTGTT AAGCTTTGAA 186050 .......... .......... .......... .......... .......... .......... 692 CACTTCAAGA TTCTTGAAAA ATTTCCTTAT TCTTGATTAG TTCATTAAAT TTTGTCTATC 186110 .......... .......... .......... .......... .......... .......... 692 CTATAATTCA CTGCCTTATT TAATTCTTTC TATCCTACTA ATTTTACTTA TTTTCCCTTA 186170 .......... .......... .......... .......... .......... .......... 692 TAACAAAAAT CAACATTCAA AAACATTTGT GGAGGATTCA AAGTTTGATT TGGCATAACA 186230 .......... .......... .......... .......... .......... .......... 692 CAAGTGTCAG GACTACGTAA GAAAATATTA TCATCTCATA ACACCTGATT TTGGTAACTT 186290 .......... .......... .......... .......... .......... .......... 692 AATCATGAAT TTGATGATTC TTATTGAAAT ATCAAATATT TATATCTTCT TATAGGAATT 186350 .......... .......... .......... .......... .......... .......... 692 CAAATATCCA TCCAAGGATT GGATGTATTT AGCAAGGTAT AGCCAACCCT ATATTGATGG 186410 .......... .......... .......... .......... .......... .......... 692 TGTGGAATCA TTCCTCCAAC CCTATATTGA TGGTGTGGAA TTATTCCAAG ATTTTGCTTA 186470 .......... .......... .......... .......... .......... .......... 692 TTCTTATGGA AATCCTCATG GAGAGGAAAT TCAGTGTCCA TGTGCAAAAT GGTGTAATAT 186530 .......... .......... .......... .......... .......... .......... 692 TCGTTGGACT CGAAGGAATG TAGTGTATGA TCATCTAACA TGCTATGGAT TTGTTAAAGA 186590 .......... .......... .......... .......... .......... .......... 692 TTATACTAGA TGGATCAATC ATGGAGAATG AGATATCAAG TTGAATGTTG AAGATGATAT 186650 .......... .......... .......... .......... .......... .......... 692 GGATTGCTCG CGTGATTATA CTGATGAATT GTTGAATGAT CAATTTTAAA ATGTGAAATT 186710 .......... .......... .......... .......... .......... .......... 692 TTAAAGTTGA ATTAGAATTT TTAATTAAAA TAAATAATTT TAAAATTTGT TTATTTAGTT 186770 .......... .......... .......... .......... .......... .......... 692 ATATGTAAAA TTAATAAATT CAAAAAAAAA ATCTTAATTG TCTTTCTCAA TTACATTTAT 186830 .......... .......... .......... .......... .......... .......... 692 CTAGATAATT GAAAAATAAA AGAATAATAA GATTTCACTA GAATAAAATA CATCTGGAGA 186890 .......... .......... .......... .......... .......... .......... 692 TAAATTCTGG TTCATATTAA GTGAGGGTTC AACAAAAGAA TTCAACTTGG GCTTGACATA 186950 .......... .......... .......... .......... .......... .......... 692 AAGTTAAATA TTTTATAGAA TATAAATTTA AAATGATATA TTAATAAAAT TAAATTAGAA 187010 .......... .......... .......... .......... .......... .......... 692 ATATGCATTA ATTAGTCACA AAAGTTGAGG GTATATTATT ATGTCTCAAA TAAATACCTT 187070 .......... .......... .......... .......... .......... .......... 692 GGGGCATGAT ACATTTTATA TTGATTCATC ATAGATTGAT TTGTTGAGAC TTGAACAAGT 187130 .......... .......... .......... .......... .......... .......... 692 GATTGTTGAA TTTGACTATA TTCATTTGTT TGTTGGAAGG TGAAAAAATA AAGAAGAAAA 187190 .......... .......... .......... .......... .......... .......... 692 AAGATACAAA TAAAATCACT AAAAACATAC AATATTTAGT TAGGGCAGAT TATTATTATA 187250 .......... .......... .......... .......... .......... .......... 692 TATTAAATAT ATACTTGAGG CAGGACACAT GTTATATTGA TTCATTATAG GTTGATTTGA 187310 .......... .......... .......... .......... .......... .......... 692 TGGGACCTAA ACATATTATT GTTGATTTTG ACTATATCAT TTATTTGTTG GAAGCTGGAA 187370 .......... .......... .......... .......... .......... .......... 692 AAAAAAAGAA CAATAATGAC ATAAATAAAT CACTAAGCAT ACATATTTAG TTTGATTTAT 187430 .......... .......... .......... .......... .......... .......... 692 TTTTTTTATT ATAAAATTAT TCGTATCAAC TTATTATGTA TAATGTAGTC ATTTAACTTT 187490 .......... .......... .......... .......... .......... .......... 692 AGAGAAAGAT TAGTAGCGTG AAAATTGTAA TAGCTATTAG TAATACATTG ATTAGTATTA 187550 .......... .......... .......... .......... .......... .......... 692 CAAAGATATT TTTTATTAAA TGATCAATTT AGTATAAAAT AGTATAATGT ACAATTTAAA 187610 .......... .......... .......... .......... .......... .......... 692 GATGTGTGTG TTCCTTTAAT AAAATATGAA AAAGTTATTT AATATTATTA GGGTATTATT 187670 .......... .......... .......... .......... .......... .......... 692 TTAAAAAAAA GCTCACGTAT TGCTAAGATT TTTATATTTG TTCCACATTT TACTGTATGT 187730 .......... .......... .......... .......... .......... .......... 692 AAAATTATAC ATAGATATAT GGTAACTTAT AAATTGTTAT ATATCTTGTA AATAAAAACT 187790 .......... .......... .......... .......... .......... .......... 692 AACAACCAAA CGTTGGTAAT ACTAACTTTT AAGTATAATT ATTTTTTCCA ATTTCAACCA 187850 .......... .......... .......... .......... .......... .......... 692 AAACATGATA TAAATTACTA GTGATTTTAA ATAGGGACTA AATCTTATCT AACATAAATA 187910 .......... .......... .......... .......... .......... .......... 692 GGGTATATTT TTATTTGTAG AATAAAAGAT AATAATTTCA AGAAAATACT AAATCATATT 187970 .......... .......... .......... .......... .......... .......... 692 ATCTATGTTT GCTTGCATTT TAATTTTAAA ATTGACAACT CTAAAATATT TATATTATAA 188030 .......... .......... .......... .......... .......... .......... 692 TATTAAAATT ACTTTTATAT CATAATGGCA AAGATGCCAT TTTAAAACTT TTTTTTCAAA 188090 .......... .......... .......... .......... .......... .......... 692 GGCCTTAAAA ATATAAGAAT AAGAATTTAA CAACAATAAT GAATTCATTA TTGTTCTTAT 188150 .......... .......... .......... .......... .......... .......... 692 AAAAATAATA AAAAAAAGAA GAAATTATTA TTCTAAAAAA AAGAGAAGAA ATTATTATTC 188210 .......... .......... .......... .......... .......... .......... 692 TTATAAAACT CTGTAACACT GAAATAATAT AACCTAATGA AATTAAATAC ACAAAGCTTA 188270 .......... .......... .......... .......... .......... .......... 692 AAGTGAAAAA TCTAGTAAGT AATTAAAACA ATAAATACTT ATATTCCTCT TGTAGTTACA 188330 .......... .......... .......... .......... .......... .......... 692 CCAAATTAAT TAAGTGCAAC ATTGATATTT TACGTACACA TTTATGGTCT AACACGATTA 188390 .......... .......... .......... .......... .......... .......... 692 AATGATACTT TTTATCAACG TATACTTTTT GAGTAAATAT CTACCGTTTA ATAGACGTAC 188450 .......... .......... .......... .......... .......... .......... 692 ATATTTTATT TTTATTTAAA GTAAAATATG GATTAATGAA TGACATTATA AAAAAAAAAA 188510 .......... .......... .......... .......... .......... .......... 692 AATTGAAGCA ATACTTTTAG CCTAAGCTCT ATTCAACATT ATCAATGAAA ATTTAATACC 188570 .......... .......... .......... .......... .......... .......... 692 ATTCAAATTT AAACAATATA CATTGATTTG CTTACCAATA ATAGTGCTTG TCATCTCAAG 188630 .......... .......... .......... .......... .......... .......... 692 TAAGTGATAA CTCCCTTTCT CGTAAAATAT ATTTTAAGAT AAAATTATAA TTTTTTATTT 188690 .......... .......... .......... .......... .......... .......... 692 ATGGTAATTA TTAATATGAT ATTAAAATTA ATTTGACAAC ACATATTACT TGTTTTTATA 188750 .......... .......... .......... .......... .......... .......... 692 GATTTTCAAT TTTACTTGTG TCTGAATATT GTCTTGTGTG AAAACATCAC ATGTTTTCTG 188810 .......... .......... .......... .......... .......... .......... 692 CTTGAATAGA ATCTTAGTAC ATTGTTGTTT TAATATTGTT GTGTGAACAA ATCACGATTT 188870 .......... .......... .......... .......... .......... .......... 692 ACTCATTCGA GAGAAATCTT AAAATGCTTA AGATTTTTTG TTTAGTTAAT TATGAATTAT 188930 .......... .......... .......... .......... .......... .......... 692 CTCTCTTATT TTCTAAACCA CGATATTGTT ATGAATTAGT GACTAATCTT GAAATAGTAA 188990 .......... .......... .......... .......... .......... .......... 692 TGCATATTAG AGAAATAAAA AAAAGCTCAT GGAAATTTAA AAATTTATAT TTTATCATTT 189050 .......... .......... .......... .......... .......... .......... 692 AGGATGTATT TGGTACGAAA AAAAGTTATT TTTTTTTATA TTTATATCCA AAATCAGTAA 189110 .......... .......... .......... .......... .......... .......... 692 ATATTATCCC TCTAGTTATT TATATCAAAT TTATTTAGTG TGAAAACTAG ATATACACAC 189170 .......... .......... .......... .......... .......... .......... 692 AACTGTTAAG ATTAAATTGA TTAATACAAC AGTAAAGCAT AATTAATAGT GTTAAGTAAG 189230 .......... .......... .......... .......... .......... .......... 692 AAAATATGAT GTATACGATG CAATTATTCT TTTTAACTAA AGATCTTGAG TTCGATTCAT 189290 .......... .......... .......... .......... .......... .......... 692 AATAGAAAAA ATTTTGATAT ATAATATTTT AATTAATCTC CATTAGAAAA TATCATGCAT 189350 .......... .......... .......... .......... .......... .......... 692 TTAAGACACC AAAACACAAA AAGTACAAAA TACGATCATA ACTAACTTAC ACGAAAGATA 189410 .......... .......... .......... .......... .......... .......... 692 CATGTATCAG TGATTATGAA GTTTTTTTAT TTTTATTTAA GATTTGTGTC TGTTCTTTTA 189470 .......... .......... .......... .......... .......... .......... 692 ATCATTGCTT GTGTCAAATT TCTTTCTTTC TTTGTGTCAT TTACTTTTTA TTTTGTCACA 189530 .......... .......... .......... .......... .......... .......... 692 AGATTTTC-G TGAATCTAGG GGACAGTAGT T-ATATGGGT GCCATTAATA AATGGGCAAC 189588 ||| || | |||| | | | || || | || ..ATTGTCAG TGAAACCCGC TAGCTGTGGT TGAT...... .......... .......... 724 TTTTACGTAT AGCAAATAAA AAATTTATAT TTTTATGCTA TAGCAAACTT TGTATAATTG 189648 .......... .......... .......... .......... .......... .......... 724 CGCTCCATAG CAAACATAAA ATTGTATAAT TTGCTATACA TATATAATTG TATAATTCGT 189708 .......... .......... .......... .......... .......... .......... 724 TGGCCTAAAT TGTATAATTC GCTGGCCTAA ATTGTATAAT TCGCTGGCCT ATTTCGCCGC 189768 .......... .......... .......... .......... .......... .......... 724 AATTGTATAA TTTGTTTTGC ATACAGTTGA ATCGAATTAA AATGTATGTA TATTGCATAA 189828 .......... .......... .......... .......... .......... .......... 724 TTATAAGTGT ATAGCAAGAA GATATATGTT TTTCTCGCTT TACACAAAAA CAGAAACACA 189888 .......... .......... .......... .......... .......... .......... 724 ATATATACAC TTCTGTTGTA TAAAGCTAGA GAAAATTGTA TTTCACTACA ATTGTATAAT 189948 .......... .......... .......... .......... .......... .......... 724 TCACAATTGT ATAATTCGTT GGCCTTTTTC TCTGCAATAT TTGAAGTAAA ATGTTTGTAA 190008 .......... .......... .......... .......... .......... .......... 724 ATTGTATAAT TAAGTGTATA ACACGAAGAT ATACATTTTT GCATGTGTAT ATACAATTTT 190068 .......... .......... .......... .......... .......... .......... 724 CTCTCGCTTT ATATAAAACA GAAACAGAAT TATACACTTC TGTGTATAAA GCGAGAGAGG 190128 .......... .......... .......... .......... .......... .......... 724 CGAGCGAGAA TGGAGAGTGG CGAGCGAGAT TTTTGAGAGA GAGACGCTGA CAAATTTTAA 190188 .......... .......... .......... .......... .......... .......... 724 CTAATGTTTG CTATGGAGCA CAATTAAATC AAACCCTAGC TATTCCATTT AATTTAGGCT 190248 .......... .......... .......... .......... .......... .......... 724 GTTAGTTTGC TATTATATAT AATTTTCCCT TAATAAATTG TCAAATGAAA AAGTAGGCCC 190308 .......... .......... .......... .......... .......... .......... 724 TACATGCCAC TTATATGTTT TGTTTGATAC TTTTTAAAAT ATTATTTCTT TCTTCATCCC 190368 .......... .......... .......... .......... .......... .......... 724 TAAAATATAT GATACATTCA AAATTAATCT TTCTTTTTTT ACCAACTACA TCACACTTAC 190428 .......... .......... .......... .......... .......... .......... 724 AAAATATTGA TGATTTTGAT AAATTAGAGC AATGTGCTTT CATGTTTGAG CCCCTTCTGT 190488 .......... .......... .......... .......... .......... .......... 724 TATTTTTGTG TCTATTGCTT AATAGTTTTA GAATATATTT AGATTGATTT AGTGAAGTAT 190548 .......... .......... .......... .......... .......... .......... 724 TTTTAAGATA AAATAATGTT TTTAGGAATT TGAGTAAATT TAAAATTATT TATAACTAAA 190608 .......... .......... .......... .......... .......... .......... 724 GCGTTGAATT ATAAGCTAAA ATTATAAAAA TAAATTTATA AGCCATAATA TGAAAATTCT 190668 .......... .......... .......... .......... .......... .......... 724 AGCTTAACAT TATGTTTGTA TTGAATAGAC GAATTTAACA GTGAGACAAA TTATAATATT 190728 .......... .......... .......... .......... .......... .......... 724 CAACATTATA ATAGTTGGAA CACTTAGTAT CCCTTATATA CAAGAAAAAA TCTTCATTTT 190788 .......... .......... .......... .......... .......... .......... 724 ATTTTTTAAA AGAGAAATTA GTAGATAATA TATATTACAA ATATATTGAA AAGTCACAAA 190848 .......... .......... .......... .......... .......... .......... 724 AATATGAAAA GATATTACTG TTATAAAACA AAACAAAGTA AAATAATAAA ATATAGTGAA 190908 .......... .......... .......... .......... .......... .......... 724 AAAAACTAAC ATTATGTATG AGATTGATTA AGATAATTAT TTGAGTTAGT TGTTATTAAA 190968 .......... .......... .......... .......... .......... .......... 724 TTCTGTAAAA TACAGATTTG TTAAAAAATT ATGCATTAAG AGCGGGCTGA AAATAAAATA 191028 .......... .......... .......... .......... .......... .......... 724 TTACTTTGCG GGACAAAATT AGAGTCTTCA TTGATTTTTG CAGATTTGTC TCACACATTT 191088 .......... .......... .......... .......... .......... .......... 724 TTTCTTCCCT ACGATAAAGG GAGCTACCAA TACACATGGA TCAT 191132 | ||||| | | | ||||| || .......... .........G GAGCTGCAAC TGGACATGCC AGAT 749 hqPGS_C01HBa0216G16.1+_SGN-U335893+ (185391 185480,185561 185640,185735 185796) ******************************************************************************** EST sequence 24 -strand 502 n (File: SGN-U333250-) 1 GGGAAGCTCT GAGTTCCTGT CGTCTTTTCA AAAGCTCTCA TCGAAGATCC TTCATTGGAA 61 TCCATTAATC GTTGTGGAAT CGTTTCCAGC AGCTAGAGTT CAAGTTCGCT GCCGGATAAA 121 GAAGTAGAGC CAGGACTCAA CTGCCAGTTG CTGCAGCGCT CATCGCAGCA GTAGATTTGT 181 TTACTAGAGG AATTGATATT CAAGCAGTTA ACGTTGTTAT CAATTTTGAT TTTCCTAAGA 241 ACTCAGAAAC GTATTTGCAC AGGGGAAATG GAGGTGATCA AATTTGAAGT GGATGATGAA 301 GAGTTTTTGA ACTATTGTAA AAGTTTAAAT ACATTTTTGA TTTATTGTGT ACACATTTAG 361 AATATTGATG TATAAGAATG GGTATGTACA CAACACATAC TATCTTTTGG TTGTACATAA 421 AATATTTCTC GAAGTTTATT TGAAATATAT AGCTTCAATT TAATGATTAA TTAGTTAAAA 481 AAAAAAAAAA AAAAACTCGA GA Predicted gene structure (within gDNA segment 183069 to 189061): Exon 1 185389 185480 ( 92 n); cDNA 172 263 ( 92 n); score: 0.978 PPA cDNA 477 496 MATCH C01HBa0216G16.1+ SGN-U333250- 0.978 92 0.183 C PGS_C01HBa0216G16.1+_SGN-U333250- (185389 185480) Alignment (genomic DNA sequence = upper lines): TAGATTTGTT TACTAGAGGA ATTGATATTC AAGCAGTTAA CGTTGTTATC AATTCTGATT 185448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TAGATTTGTT TACTAGAGGA ATTGATATTC AAGCAGTTAA CGTTGTTATC AATTTTGATT 231 TTCCTAAGAA CACAGAAACG TATTTGCACA GG 185480 |||||||||| | |||||||| |||||||||| || TTCCTAAGAA CTCAGAAACG TATTTGCACA GG 263 hqPGS_C01HBa0216G16.1+_SGN-U333250- (185389 185480) ******************************************************************************** EST sequence 7 -strand 1136 n (File: SGN-U325194-) 1 TTTTTTTTTA GGCAGCGAAT TATACAATTG TGCATTATAC AATTGCAGTG AAATAGGATA 61 GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAAT TTTATGTTTG CTATGGAACG 121 CAATTATGCG AAGTTTGCTA TAGCATACAA ATATGAATTT TTTGTTTGCT GTATGTGAAA 181 AAAGTTGCCC AAAAATAAAT GAGAGTTAGA TTTAAATGAA ATGGACACAT TGATTTCTCG 241 TCTAAAAGCA TTAAAGGTGG TTGATTCTTA CTCGACTAAG TGCAGTAGCT TCCCCAAGTC 301 CATATAACGA ATCAATCAAC AGTGTCCGCA GTGAAGCTGG ACCTCTAGCC ATGTCCATCC 361 CTGTTTCACT TGCGACACCA AATATAGCCA ATGCAGAAGC TGTTGCTTCC ACAGCATGGG 421 ATGGATCAAC AGCGACAAAG GCAGCAATGA GGGCAGTGAC TGAACATCCA GATGCAGTAA 481 TCTTTTGCAA CATAGGCACC CCATTGTGAA CACAAACAAC CCTATCACCG TCTGTGATAT 541 AGTCAACAGC TCCAGAAACA GCGACTACAC TACCACTTTG TTGAGCGATG GACTTAGCAG 601 CTTCAACAGC ATCACTTGAA CCATGTACAC TATCCACACC CTTGGAATTT GAGTCAACAC 661 AACCCTTGAA AAGAGCAAGA ATCTCAGACC CATTGCCTCT AACAACACTA GGTTTTAAAG 721 CAAGTAGCTC CAAACACGCC TTTAACCGGA AACTTGACCC ACCGGCAGCA ACAGGATCAA 781 GCACCCAAGG TTTTTTCGAT TGATTCGCCA CTTGTGCCGC TAATTTCATA CCGGGTAGCC 841 AGTCCGGAGT GAGGGTTCCG GCATTTATGC AAACTCCAAG GGCTTTTGGA GTAAATTCTG 901 GGATTTCTTC AACGGAATGA ATCATCGCCG GTGATGCGCC GGCGGATAAC AGAGTATTGG 961 CCATGAAATC CATTGAAACG AAGTTGGTTA TACATTGAAT TAATGGGGAT TTTTGACGAA 1021 CTAATTCGAA ATGTGTCCAT GCTTGTTTGG GCCAATCAAA AGGGAGTTCT TGAGCTCCCT 1081 TTTGGGGTTC AATGGTGTTA CTACTTTTGT CTTCTTCCAT AGGAGTCTAT AAGCGA Predicted gene structure (within gDNA segment 190953 to 179132): Exon 1 189969 189926 ( 44 n); cDNA 13 56 ( 44 n); score: 0.909 Intron 1 189925 189713 ( 213 n); Pd: 0.000 (s: 0.91), Pa: 0.000 (s: 0.90) Exon 2 189712 189585 ( 128 n); cDNA 57 184 ( 128 n); score: 0.867 Intron 2 189584 187365 (2220 n); Pd: 0.000 (s: 0.82), Pa: 0.874 (s: 0) Exon 3 187364 187344 ( 21 n); cDNA 185 205 ( 21 n); score: 0.714 Intron 3 187343 186831 ( 513 n); Pd: 0.000 (s: 0), Pa: 0.263 (s: 0) Exon 4 186830 186793 ( 38 n); cDNA 206 242 ( 37 n); score: 0.605 Intron 4 186792 186671 ( 122 n); Pd: 0.000 (s: 0), Pa: 0.658 (s: 0) Exon 5 186670 186662 ( 9 n); cDNA 243 251 ( 9 n); score: 0.667 Intron 5 186661 183723 (2939 n); Pd: 0.951 (s: 0), Pa: 0.870 (s: 0) Exon 6 183722 183692 ( 31 n); cDNA 252 279 ( 28 n); score: 0.613 Intron 6 183691 183578 ( 114 n); Pd: 0.696 (s: 0), Pa: 0.715 (s: 0) Exon 7 183577 183568 ( 10 n); cDNA 280 289 ( 10 n); score: 0.400 Intron 7 183567 182110 (1458 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 8 182109 182068 ( 42 n); cDNA 290 330 ( 41 n); score: 0.643 MATCH C01HBa0216G16.1- SGN-U325194- 0.867 323 0.284 C PGS_C01HBa0216G16.1-_SGN-U325194- (189969 189926,189712 189585,187364 187344,186830 186793,186670 186662,183722 183692,183577 183568,182109 182068) Alignment (genomic DNA sequence = upper lines): CAACGAATTA TACAATTGTG AATTATACAA TTGTAGTGAA ATACAATTTT CTCTAGCTTT 189910 || ||||||| |||||||||| ||||||||| ||| |||||| ||| CAGCGAATTA TACAATTGTG CATTATACAA TTGCAGTGAA ATAG...... .......... 56 ATACAACAGA AGTGTATATA TTGTGTTTCT GTTTTTGTGT AAAGCGAGAA AAACATATAT 189850 .......... .......... .......... .......... .......... .......... 56 CTTCTTGCTA TACACTTATA ATTATGCAAT ATACATACAT TTTAATTCGA TTCAACTGTA 189790 .......... .......... .......... .......... .......... .......... 56 TGCAAAACAA ATTATACAAT TGCGGCGAAA TAGGCCAGCG AATTATACAA TTTAGGCCAG 189730 .......... .......... .......... .......... .......... .......... 56 CGAATTATAC AATTTAGGCC AACGAATTAT ACAATTATAT ATGTATAGCA AATTATACAA 189670 | | |||||||| |||||| ||| ||||||||| |||||||||| .......... .......GAT AGCGAATTAT ACAATTGTAT ATGTATAGCG AATTATACAA 99 TTTTATGTTT GCTATGGAGC GCAATTATAC AAAGTTTGCT ATAGCATAAA AATATAAATT 189610 |||||||||| |||||||| | |||||||| | ||||||||| |||||||| | ||||| |||| TTTTATGTTT GCTATGGAAC GCAATTATGC GAAGTTTGCT ATAGCATACA AATATGAATT 159 TTTTATTTGC TATACGTAAA AGTTGCCCAT TTATTAATGG CACCCATATA ACTACTGTCC 189550 |||| ||||| | || || || | | TTTTGTTTGC TGTATGTGAA AAAAG..... .......... .......... .......... 184 CCTAGATTCA CGAAAATCTT GTGACAAAAT AAAAAGTAAA TGACACAAAG AAAGAAAGAA 189490 .......... .......... .......... .......... .......... .......... 184 ATTTGACACA AGCAATGATT AAAAGAACAG ACACAAATCT TAAATAAAAA TAAAAAAACT 189430 .......... .......... .......... .......... .......... .......... 184 TCATAATCAC TGATACATGT ATCTTTCGTG TAAGTTAGTT ATGATCGTAT TTTGTACTTT 189370 .......... .......... .......... .......... .......... .......... 184 TTGTGTTTTG GTGTCTTAAA TGCATGATAT TTTCTAATGG AGATTAATTA AAATATTATA 189310 .......... .......... .......... .......... .......... .......... 184 TATCAAAATT TTTTCTATTA TGAATCGAAC TCAAGATCTT TAGTTAAAAA GAATAATTGC 189250 .......... .......... .......... .......... .......... .......... 184 ATCGTATACA TCATATTTTC TTACTTAACA CTATTAATTA TGCTTTACTG TTGTATTAAT 189190 .......... .......... .......... .......... .......... .......... 184 CAATTTAATC TTAACAGTTG TGTGTATATC TAGTTTTCAC ACTAAATAAA TTTGATATAA 189130 .......... .......... .......... .......... .......... .......... 184 ATAACTAGAG GGATAATATT TACTGATTTT GGATATAAAT ATAAAAAAAA ATAACTTTTT 189070 .......... .......... .......... .......... .......... .......... 184 TTCGTACCAA ATACATCCTA AATGATAAAA TATAAATTTT TAAATTTCCA TGAGCTTTTT 189010 .......... .......... .......... .......... .......... .......... 184 TTTATTTCTC TAATATGCAT TACTATTTCA AGATTAGTCA CTAATTCATA ACAATATCGT 188950 .......... .......... .......... .......... .......... .......... 184 GGTTTAGAAA ATAAGAGAGA TAATTCATAA TTAACTAAAC AAAAAATCTT AAGCATTTTA 188890 .......... .......... .......... .......... .......... .......... 184 AGATTTCTCT CGAATGAGTA AATCGTGATT TGTTCACACA ACAATATTAA AACAACAATG 188830 .......... .......... .......... .......... .......... .......... 184 TACTAAGATT CTATTCAAGC AGAAAACATG TGATGTTTTC ACACAAGACA ATATTCAGAC 188770 .......... .......... .......... .......... .......... .......... 184 ACAAGTAAAA TTGAAAATCT ATAAAAACAA GTAATATGTG TTGTCAAATT AATTTTAATA 188710 .......... .......... .......... .......... .......... .......... 184 TCATATTAAT AATTACCATA AATAAAAAAT TATAATTTTA TCTTAAAATA TATTTTACGA 188650 .......... .......... .......... .......... .......... .......... 184 GAAAGGGAGT TATCACTTAC TTGAGATGAC AAGCACTATT ATTGGTAAGC AAATCAATGT 188590 .......... .......... .......... .......... .......... .......... 184 ATATTGTTTA AATTTGAATG GTATTAAATT TTCATTGATA ATGTTGAATA GAGCTTAGGC 188530 .......... .......... .......... .......... .......... .......... 184 TAAAAGTATT GCTTCAATTT TTTTTTTTTT ATAATGTCAT TCATTAATCC ATATTTTACT 188470 .......... .......... .......... .......... .......... .......... 184 TTAAATAAAA ATAAAATATG TACGTCTATT AAACGGTAGA TATTTACTCA AAAAGTATAC 188410 .......... .......... .......... .......... .......... .......... 184 GTTGATAAAA AGTATCATTT AATCGTGTTA GACCATAAAT GTGTACGTAA AATATCAATG 188350 .......... .......... .......... .......... .......... .......... 184 TTGCACTTAA TTAATTTGGT GTAACTACAA GAGGAATATA AGTATTTATT GTTTTAATTA 188290 .......... .......... .......... .......... .......... .......... 184 CTTACTAGAT TTTTCACTTT AAGCTTTGTG TATTTAATTT CATTAGGTTA TATTATTTCA 188230 .......... .......... .......... .......... .......... .......... 184 GTGTTACAGA GTTTTATAAG AATAATAATT TCTTCTCTTT TTTTTAGAAT AATAATTTCT 188170 .......... .......... .......... .......... .......... .......... 184 TCTTTTTTTT ATTATTTTTA TAAGAACAAT AATGAATTCA TTATTGTTGT TAAATTCTTA 188110 .......... .......... .......... .......... .......... .......... 184 TTCTTATATT TTTAAGGCCT TTGAAAAAAA AGTTTTAAAA TGGCATCTTT GCCATTATGA 188050 .......... .......... .......... .......... .......... .......... 184 TATAAAAGTA ATTTTAATAT TATAATATAA ATATTTTAGA GTTGTCAATT TTAAAATTAA 187990 .......... .......... .......... .......... .......... .......... 184 AATGCAAGCA AACATAGATA ATATGATTTA GTATTTTCTT GAAATTATTA TCTTTTATTC 187930 .......... .......... .......... .......... .......... .......... 184 TACAAATAAA AATATACCCT ATTTATGTTA GATAAGATTT AGTCCCTATT TAAAATCACT 187870 .......... .......... .......... .......... .......... .......... 184 AGTAATTTAT ATCATGTTTT GGTTGAAATT GGAAAAAATA ATTATACTTA AAAGTTAGTA 187810 .......... .......... .......... .......... .......... .......... 184 TTACCAACGT TTGGTTGTTA GTTTTTATTT ACAAGATATA TAACAATTTA TAAGTTACCA 187750 .......... .......... .......... .......... .......... .......... 184 TATATCTATG TATAATTTTA CATACAGTAA AATGTGGAAC AAATATAAAA ATCTTAGCAA 187690 .......... .......... .......... .......... .......... .......... 184 TACGTGAGCT TTTTTTTAAA ATAATACCCT AATAATATTA AATAACTTTT TCATATTTTA 187630 .......... .......... .......... .......... .......... .......... 184 TTAAAGGAAC ACACACATCT TTAAATTGTA CATTATACTA TTTTATACTA AATTGATCAT 187570 .......... .......... .......... .......... .......... .......... 184 TTAATAAAAA ATATCTTTGT AATACTAATC AATGTATTAC TAATAGCTAT TACAATTTTC 187510 .......... .......... .......... .......... .......... .......... 184 ACGCTACTAA TCTTTCTCTA AAGTTAAATG ACTACATTAT ACATAATAAG TTGATACGAA 187450 .......... .......... .......... .......... .......... .......... 184 TAATTTTATA ATAAAAAAAA TAAATCAAAC TAAATATGTA TGCTTAGTGA TTTATTTATG 187390 .......... .......... .......... .......... .......... .......... 184 TCATTATTGT TCTTTTTTTT TCCAGCTTCC AACAAATAAA TGATATAGTC AAAATCAACA 187330 | || | ||||||| ||| | .......... .......... .....TTGCC CAAAAATAAA TGAGAG.... .......... 205 ATAATATGTT TAGGTCCCAT CAAATCAACC TATAATGAAT CAATATAACA TGTGTCCTGC 187270 .......... .......... .......... .......... .......... .......... 205 CTCAAGTATA TATTTAATAT ATAATAATAA TCTGCCCTAA CTAAATATTG TATGTTTTTA 187210 .......... .......... .......... .......... .......... .......... 205 GTGATTTTAT TTGTATCTTT TTTCTTCTTT ATTTTTTCAC CTTCCAACAA ACAAATGAAT 187150 .......... .......... .......... .......... .......... .......... 205 ATAGTCAAAT TCAACAATCA CTTGTTCAAG TCTCAACAAA TCAATCTATG ATGAATCAAT 187090 .......... .......... .......... .......... .......... .......... 205 ATAAAATGTA TCATGCCCCA AGGTATTTAT TTGAGACATA ATAATATACC CTCAACTTTT 187030 .......... .......... .......... .......... .......... .......... 205 GTGACTAATT AATGCATATT TCTAATTTAA TTTTATTAAT ATATCATTTT AAATTTATAT 186970 .......... .......... .......... .......... .......... .......... 205 TCTATAAAAT ATTTAACTTT ATGTCAAGCC CAAGTTGAAT TCTTTTGTTG AACCCTCACT 186910 .......... .......... .......... .......... .......... .......... 205 TAATATGAAC CAGAATTTAT CTCCAGATGT ATTTTATTCT AGTGAAATCT TATTATTCTT 186850 .......... .......... .......... .......... .......... .......... 205 TTATTTTTCA ATTATCTAGA TAAATGTAAT TGAGAAAGAC AATTAAGATT TTTTTTTTGA 186790 || || ||| ||| | ||| | | |||| | | | .......... .........T TAGATTTAAA TGAAATGGAC ACAT-TGATT TCTCGTC... 242 ATTTATTAAT TTTACATATA ACTAAATAAA CAAATTTTAA AATTATTTAT TTTAATTAAA 186730 .......... .......... .......... .......... .......... .......... 242 AATTCTAATT CAACTTTAAA ATTTCACATT TTAAAATTGA TCATTCAACA ATTCATCAGT 186670 | .......... .......... .......... .......... .......... .........T 243 ATAATCACGC GAGCAATCCA TATCATCTTC AACATTCAAC TTGATATCTC ATTCTCCATG 186610 | || || AAAAGCAT.. .......... .......... .......... .......... .......... 251 ATTGATCCAT CTAGTATAAT CTTTAACAAA TCCATAGCAT GTTAGATGAT CATACACTAC 186550 .......... .......... .......... .......... .......... .......... 251 ATTCCTTCGA GTCCAACGAA TATTACACCA TTTTGCACAT GGACACTGAA TTTCCTCTCC 186490 .......... .......... .......... .......... .......... .......... 251 ATGAGGATTT CCATAAGAAT AAGCAAAATC TTGGAATAAT TCCACACCAT CAATATAGGG 186430 .......... .......... .......... .......... .......... .......... 251 TTGGAGGAAT GATTCCACAC CATCAATATA GGGTTGGCTA TACCTTGCTA AATACATCCA 186370 .......... .......... .......... .......... .......... .......... 251 ATCCTTGGAT GGATATTTGA ATTCCTATAA GAAGATATAA ATATTTGATA TTTCAATAAG 186310 .......... .......... .......... .......... .......... .......... 251 AATCATCAAA TTCATGATTA AGTTACCAAA ATCAGGTGTT ATGAGATGAT AATATTTTCT 186250 .......... .......... .......... .......... .......... .......... 251 TACGTAGTCC TGACACTTGT GTTATGCCAA ATCAAACTTT GAATCCTCCA CAAATGTTTT 186190 .......... .......... .......... .......... .......... .......... 251 TGAATGTTGA TTTTTGTTAT AAGGGAAAAT AAGTAAAATT AGTAGGATAG AAAGAATTAA 186130 .......... .......... .......... .......... .......... .......... 251 ATAAGGCAGT GAATTATAGG ATAGACAAAA TTTAATGAAC TAATCAAGAA TAAGGAAATT 186070 .......... .......... .......... .......... .......... .......... 251 TTTCAAGAAT CTTGAAGTGT TCAAAGCTTA ACAGAATCCT GTGATAAGGT CTACTGGAAA 186010 .......... .......... .......... .......... .......... .......... 251 CCTAATTTTA AAGAGTTCAT TATATTTTAC TTCAATTGTT ATGTAGCCTT CCAAAATCTA 185950 .......... .......... .......... .......... .......... .......... 251 AAAATGGAAG AAAACCATTA AAATGATCTA AAGCAAGCAA GTTGAACTAG CTTTTAAGTC 185890 .......... .......... .......... .......... .......... .......... 251 TAATCAGAAC CTACCAGGAC TACAAAACAA GTCAATTTAC TTCATCAAAA ACTCATTCAG 185830 .......... .......... .......... .......... .......... .......... 251 AAAAATAAGG GGAGCTAACA TAGAAGACTT TATATATAGC TTAATCTATC TGTGAAGGGA 185770 .......... .......... .......... .......... .......... .......... 251 TTTTCTTGAT TTCTATTCCT AGTTCTTGTT CAATTCTATA TGTCACAATC AGATATATAC 185710 .......... .......... .......... .......... .......... .......... 251 TTTTAGTAGT AGTAGAAATC AACACATAGA GCTTAATGAT CTAGTACAAA GTAAATGAAC 185650 .......... .......... .......... .......... .......... .......... 251 ATAATTAGTC CATACAAAGT GAAGTGATCC TCAAAAGTAA CATGGCTAAC AACTAAACCA 185590 .......... .......... .......... .......... .......... .......... 251 AACTTCACAA ATCTCCCTAA TTGTCCAACC TGCAAAATAA ATTACCAAAG ATGAAATAGC 185530 .......... .......... .......... .......... .......... .......... 251 AAAAAAATAT ATAAGCCAAT AAGCAAGATC AAATATATGT TATACATACC CTGTGCAAAT 185470 .......... .......... .......... .......... .......... .......... 251 ACGTTTCTGT GTTCTTAGGA AAATCAGAAT TGATAACAAC GTTAACTGCT TGAATATCAA 185410 .......... .......... .......... .......... .......... .......... 251 TTCCTCTAGT AAACAAATCT AATCTATTAA TAAAGAACAC AAAATTATGA AATTTAACAA 185350 .......... .......... .......... .......... .......... .......... 251 TTAATCAATT TTAAATTTCA GTTGTAAGAG CCCCAAAAGT AATCAATTTC TTCTAAACAC 185290 .......... .......... .......... .......... .......... .......... 251 AAAATAAAAA TTTCTTCTAA AAACAAACTA CTGATCCAAA CAAGTTCATC AAAAGAATAA 185230 .......... .......... .......... .......... .......... .......... 251 ATCCTAGTAG TATAAACAAA TTGGCTACTT AATGTAGTAT CGATGAGTAC TACGAATGAT 185170 .......... .......... .......... .......... .......... .......... 251 TAGCACTATA AACCAAAGAA TCCATTAGCT TCTAGGTTCC AAGAAACAAA TAAATAATGG 185110 .......... .......... .......... .......... .......... .......... 251 AATGCTATCC AAAACCGAAA CAAGACGGAA CTATAAATAT ATTGAAGCAT GCTGGAAATG 185050 .......... .......... .......... .......... .......... .......... 251 GATCTATTGA ACTTTAAATT GTTACAAACT TACTCACTTA GAAGCAAATA TGGACAGAAA 184990 .......... .......... .......... .......... .......... .......... 251 TTTGAAACAT CTGAAAATAT GAAGCTATGT TCTGGTTTAA GAGCAGAACT ATGAAGAATT 184930 .......... .......... .......... .......... .......... .......... 251 ATTATCATAC ACTCTCACCA CATTCTTTTC ATATTTTGAA TGTCCAAAAC AACTTGACAG 184870 .......... .......... .......... .......... .......... .......... 251 AACTGATATT ACTCAAGGAC AAATGCAACC AGTAAATAAA ATTACAGTAG TAAAATGAAG 184810 .......... .......... .......... .......... .......... .......... 251 ACACATACTG AGAATTATTC ATCAATACTC AGCAATCATG AAGTAAAATT ACAGAATGTC 184750 .......... .......... .......... .......... .......... .......... 251 ACTGGAAATG CAACATCTAG TACAAAAGTT CCAGCAACTC ATTTGTAGGT TTGAATTCTT 184690 .......... .......... .......... .......... .......... .......... 251 TGGGTGCAAA CATATTTATA GGGAAGAAAA CTAAACAACT AACTAACTAT CCAAATGAAG 184630 .......... .......... .......... .......... .......... .......... 251 CCACATATTG GACATTATTG ATCAATAATA TACAGAAAAA CAATACCCTC TACTGCTAAG 184570 .......... .......... .......... .......... .......... .......... 251 GGTAGCTATT TTTTAGAAAA AAACATAGAT GAAAAACTTC AGGATAAGGA AGCTCAAGAG 184510 .......... .......... .......... .......... .......... .......... 251 AATGAAGAAC ACACCTTAAG AATCCACCTT GAACCCTCAA ATAATCAGAA TCAGAATCAT 184450 .......... .......... .......... .......... .......... .......... 251 ATGTTATGGG ATGATCATAA TTATTGTGAG TTTTGAGTTT CGAGTACCTT GTTACTATTC 184390 .......... .......... .......... .......... .......... .......... 251 TTGATTCTAA TAAATACATA ATAATAACTA CAAAATTGTA TGTCATTATT TCATGGATGA 184330 .......... .......... .......... .......... .......... .......... 251 AATATAGTCA TTTTACTGTT AAGAGATCAG AAATACCTTG ATTTTTGATG TCTACATAAT 184270 .......... .......... .......... .......... .......... .......... 251 GTTAGTTTCC TCTCAGCAAA ACCTGAAATA GCAGAGAATA TTTCATGGTT TAGAAAAAAG 184210 .......... .......... .......... .......... .......... .......... 251 TTTGATCGAA GTGTTCGTAT GCAAAAGTAA AAAATTACAG AAATAGTATC TTTATACAGA 184150 .......... .......... .......... .......... .......... .......... 251 CAACAAGAGA TTTTATTTCT TTTAGAGGAA AAATAAAAAC TGTAGCATGC TATTTCGGAA 184090 .......... .......... .......... .......... .......... .......... 251 GGCTAATGAA CAGTGAGACA TCTCTTCTTA CATTGCAACT TTACTAGGCA ACTGCAATGT 184030 .......... .......... .......... .......... .......... .......... 251 AATACAAATG TTTTTCAGTA CTACCTAAGT ACTATTTGAA ATAAAAATGT TACTAGTTTA 183970 .......... .......... .......... .......... .......... .......... 251 AAAATAATTT TATAGAAAAC ATATCTTTTA CTATATATTC TAGTAGATTG CAGATTCTGT 183910 .......... .......... .......... .......... .......... .......... 251 GAAGTATTTC TATTAATCGA GATCCATATG ATATGCTTGG AACATAAAAA ACAGAAATAT 183850 .......... .......... .......... .......... .......... .......... 251 AATAAAGCAT ATAAATTGAG TTGATAAGGA TAAACAAAAT AAGAAAACAT AAAAAATCAG 183790 .......... .......... .......... .......... .......... .......... 251 AAATATATTA AAGCATATAA GCTTTTTCAG TTCGTTAGTC ATCATTATAT CTCCAATATC 183730 .......... .......... .......... .......... .......... .......... 251 AATGTAGAAA AGGGGGAAGA TGACACACAT TGATCAAAGT ACTCCAAATT TACAAAAACA 183670 || ||| || || | | || | || | || .......TAA AGGTGGTTGA T-TCTTAC-T CGA-CTAA.. .......... .......... 279 TAGAACATGA TGAATCATTG TCTACTCCCA AGGCTGAAAC ATCTTCCTAC ACTATTATCC 183610 .......... .......... .......... .......... .......... .......... 279 AATCATTTTC TGCTTGATTA AGAAAAAATC AGGCTCAAAA TGATATCCCT ATTGACCTGG 183550 | || | .......... .......... .......... ..GTGCAGTA GC........ .......... 289 CGACTACTAT TATCACTACC AAGAAAATAG CCAGCTGGAG CAACAACTAC ACACACAAAT 183490 .......... .......... .......... .......... .......... .......... 289 CAACAACCAA ATATGGAGAA GGCAAATGAG CTATGAGATG AGCAATGGAA AGTTTTAAAT 183430 .......... .......... .......... .......... .......... .......... 289 AAGGAGAACT ACAGGCAAAA CTGACACACT TTGGGAAGAA ATAATCATGT AAGACACTTA 183370 .......... .......... .......... .......... .......... .......... 289 ACTCTACTAT TTCTACTCAT AATAACTATA ATGATCTTTT TTTCATGGTC AAACTAATAA 183310 .......... .......... .......... .......... .......... .......... 289 TCAACAAGAA CAAGAAAACC ACCTTCACAA TTGGATACAT CAATAAAGGA AATACATCAA 183250 .......... .......... .......... .......... .......... .......... 289 CAAACAAAAT AAAGGATGAT TTGAATAAAG AAAACTAGGA AAAATCGAGG AAAATACAGT 183190 .......... .......... .......... .......... .......... .......... 289 CGAGACGTTC CAGAAGAGAG AAAGAGAGAG AAAAGACTTA AGTAACAAAT AAAATACCTC 183130 .......... .......... .......... .......... .......... .......... 289 AACTATCAGC AACCAAATAT ACAATAAAAG ACGCAGTAAC AAGCCAAAAA CAAAAAAAGA 183070 .......... .......... .......... .......... .......... .......... 289 GAAAAAATAC ATTCATAAAC TGATTCTGCC AATGCTTTGA AAATAATTTG ATGTTTAGTA 183010 .......... .......... .......... .......... .......... .......... 289 ACAGAAGGAA GTTAGCATCT AGGATTTTAG GCAAATAATA CAGACGATTC CAACTTACTA 182950 .......... .......... .......... .......... .......... .......... 289 TCATTTTATT GACGAATTGA TATGCAAAAA AGGCAAACAA TACAGACGAT TCAAAGTATA 182890 .......... .......... .......... .......... .......... .......... 289 AAACAAGGAC TACAACTAAG GAAACTTGTA CAAATAAATG AAAACTAGAG GAAATTTAAT 182830 .......... .......... .......... .......... .......... .......... 289 CACCTAAATG GGTTATCATT ATTTGGGAAA TACCAACAGA AAGAAACTGA CTTCCTACTT 182770 .......... .......... .......... .......... .......... .......... 289 GACATGAGGT ATCAAAATTA GTGATTCACA AAATTACGAG CACAAATAAA TAAAGATGTA 182710 .......... .......... .......... .......... .......... .......... 289 AATTCAAAAA TAGCATGCTC AGCCACTATC CGAACAAGGA TAAAAATCTC ACAAAACTAA 182650 .......... .......... .......... .......... .......... .......... 289 ACATGAACTT TAAACTGAAA TTATCTCAAT ATTGACATTA GCGACAGATA CATTGAAAAC 182590 .......... .......... .......... .......... .......... .......... 289 CACAAAATAA AAGATAGAGA ATGTCATCTT TAAGTTGATT AAACACGGAC TTAAAGATCA 182530 .......... .......... .......... .......... .......... .......... 289 ATTTAGATGA GATAGAAAAC CAAGCCTATC TTTGATCAAG CTGACTAATC TAGGAAGTAA 182470 .......... .......... .......... .......... .......... .......... 289 AACAACCAAG TAATGATGCA ACATCATGAC ATGAAACCAA GTTCTAATCC ATTTGAAAAT 182410 .......... .......... .......... .......... .......... .......... 289 GATCTCTAGG AGAAAATGAA ATGTCATAGC TTGTATTTCT AAAACATAGA GAATTATATA 182350 .......... .......... .......... .......... .......... .......... 289 AATTGTCGGG TACACAACAT TCATTACATG CATGGTTCAC AAAAATAGTA AAAAGAAAAG 182290 .......... .......... .......... .......... .......... .......... 289 ATTGAACTAT AGTATAGGAG AGCACCTAGT GAAACTAGAT TGTGATGAAG ACTGGAGGAG 182230 .......... .......... .......... .......... .......... .......... 289 ATGCAATGAT CTGCTTAGCT TTGCGAGTGA ATGACAAGCA TAGTGAGTGA CAGAATGAAG 182170 .......... .......... .......... .......... .......... .......... 289 ATACCCGCAC GAAAAAACAA GAAAATAATC TTAGTTTGTC ATATGCTATA GAATTCCAAA 182110 .......... .......... .......... .......... .......... .......... 289 TAGAACAAGA ACAGAATCAG TAATCAATCA AGATTTTCCT CA 182068 | |||| || || | ||||||||| | | | ||| || TTCCCCAAGT CCA-TATAAC GAATCAATCA ACAGTGTCCG CA 330 hqPGS_C01HBa0216G16.1-_SGN-U325194- (189969 189926,189712 189585,187364 187344) ******************************************************************************** EST sequence 30 +strand 890 n (File: SGN-U335137+) 1 AGAGCTGGAG CTCCCCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC CGGGCTGCAG 61 GGAAAAACAT ATATCTTATT GCTATACACT TATAATTATG CAATATACAT ACATTTTAAT 121 TCGGTTCAAT TATATGCAAA GCAAATTTTA TAATAATATT GCAGCGAAAT AGGCAGCGAA 181 TTATACAATT GTAGTTAAAT AGGATAGCGA ATTATACAAT TGCAGCGAAA TAGGCCAGCG 241 AATTATACAA TTTAGGTCAG CGAATTATAC AATTTTATGT TTGCTATGGA GCGCAATTAT 301 GCAAACTTTG TTATAGCATA CAAATATGAA TTTTTTGTTT GTTATATGTG AAAGTTGCCC 361 ATTAATTAAA GAGTCAATAA AATAGCGGTC TAATCAAGTC CTAAGCAGCC CAAGGTTTGA 421 CCCGTCAACC CAAAAATGAA TAATATTATG GGAAAAGGGT ATGATATACC CCTCAACTTT 481 GTCATTTGAA ACTGATATAC CCCTCGTTAT GAAAGTGGCT CATATATACC CTTACCGTTA 541 TACAAATGGT TCACATATAC CTCTGCCGTT ACAAAATGAG CTCATATATA CCCTTCATTT 601 AACGAAAGTG AAAAAATTAC TTTTAAATTT ATAATTTTAC TTTAATTTTA AAAAAAAATA 661 TATTTAGGGG CATATATGAT TCTTTTTTCA AAGTTCAAGG TATATTTCAA ATTTTTTTAA 721 TACATAAATT ATTTTTTTGA CTTATTTATT ATAATTATTT GAGTTNATTA ATCTTGTTTT 781 TTTTCTTNCA TTCCCNTAGT GTAAGAAAAA AATTTAAAAC ATTTTTTATG TCTATATGGA 841 ATTTAATTTT TGGTATCGAA GAAAAGAATG GTCATNCTAC ATAGTTTTAC Predicted gene structure (within gDNA segment 191072 to 182532): Exon 1 190000 189941 ( 60 n); cDNA 145 201 ( 57 n); score: 0.800 Intron 1 189940 189789 ( 152 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.90) Exon 2 189788 189727 ( 62 n); cDNA 202 263 ( 62 n); score: 0.903 Intron 2 189726 189679 ( 48 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.94) Exon 3 189678 189571 ( 108 n); cDNA 264 371 ( 108 n); score: 0.898 Intron 3 189570 187365 (2206 n); Pd: 0.000 (s: 0.86), Pa: 0.874 (s: 0) Exon 4 187364 187348 ( 17 n); cDNA 372 388 ( 17 n); score: 0.529 Intron 4 187347 186671 ( 677 n); Pd: 0.000 (s: 0), Pa: 0.658 (s: 0) Exon 5 186670 186662 ( 9 n); cDNA 389 397 ( 9 n); score: 0.778 Intron 5 186661 184089 (2573 n); Pd: 0.951 (s: 0), Pa: 0.058 (s: 0) Exon 6 184088 184078 ( 11 n); cDNA 398 407 ( 10 n); score: 0.545 Intron 6 184077 183578 ( 500 n); Pd: 0.794 (s: 0), Pa: 0.715 (s: 0) Exon 7 183577 183572 ( 6 n); cDNA 408 413 ( 6 n); score: 0.833 MATCH C01HBa0216G16.1- SGN-U335137+ 0.874 273 0.307 C PGS_C01HBa0216G16.1-_SGN-U335137+ (190000 189941,189788 189727,189678 189571,187364 187348,186670 186662,184088 184078,183577 183572) Alignment (genomic DNA sequence = upper lines): ATTTTACTTC AAATATTGCA GAGAAAAAGG CCAACGAATT ATACAATTGT GAATTATACA 189941 |||||| | ||||||||| | |||| ||| || |||||| |||||||||| | ||| | | ATTTTA-TAA TAATATTGCA GCGAAATAGG -CAGCGAATT ATACAATTGT -AGTTAAATA 201 ATTGTAGTGA AATACAATTT TCTCTAGCTT TATACAACAG AAGTGTATAT ATTGTGTTTC 189881 .......... .......... .......... .......... .......... .......... 201 TGTTTTTGTG TAAAGCGAGA AAAACATATA TCTTCTTGCT ATACACTTAT AATTATGCAA 189821 .......... .......... .......... .......... .......... .......... 201 TATACATACA TTTTAATTCG ATTCAACTGT ATGCAAAACA AATTATACAA TTGCGGCGAA 189761 | | | | |||||||||| |||| ||||| .......... .......... .......... ..GGATAGCG AATTATACAA TTGCAGCGAA 229 ATAGGCCAGC GAATTATACA ATTTAGGCCA GCGAATTATA CAATTTAGGC CAACGAATTA 189701 |||||||||| |||||||||| ||||||| || |||| ATAGGCCAGC GAATTATACA ATTTAGGTCA GCGA...... .......... .......... 263 TACAATTATA TATGTATAGC AAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATA 189641 |||||||| |||||||||| |||||||||| ||||||||| .......... .......... ..ATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 301 CAAAGTTTGC TATAGCATAA AAATATAAAT TTTTTATTTG CTATACGTAA AAGTTGCCCA 189581 |||| |||| ||||||||| |||||| ||| ||||| |||| |||| || | |||||||||| CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 361 TTTATTAATG GCACCCATAT AACTACTGTC CCCTAGATTC ACGAAAATCT TGTGACAAAA 189521 || ||||| | TTAATTAAAG .......... .......... .......... .......... .......... 371 TAAAAAGTAA ATGACACAAA GAAAGAAAGA AATTTGACAC AAGCAATGAT TAAAAGAACA 189461 .......... .......... .......... .......... .......... .......... 371 GACACAAATC TTAAATAAAA ATAAAAAAAC TTCATAATCA CTGATACATG TATCTTTCGT 189401 .......... .......... .......... .......... .......... .......... 371 GTAAGTTAGT TATGATCGTA TTTTGTACTT TTTGTGTTTT GGTGTCTTAA ATGCATGATA 189341 .......... .......... .......... .......... .......... .......... 371 TTTTCTAATG GAGATTAATT AAAATATTAT ATATCAAAAT TTTTTCTATT ATGAATCGAA 189281 .......... .......... .......... .......... .......... .......... 371 CTCAAGATCT TTAGTTAAAA AGAATAATTG CATCGTATAC ATCATATTTT CTTACTTAAC 189221 .......... .......... .......... .......... .......... .......... 371 ACTATTAATT ATGCTTTACT GTTGTATTAA TCAATTTAAT CTTAACAGTT GTGTGTATAT 189161 .......... .......... .......... .......... .......... .......... 371 CTAGTTTTCA CACTAAATAA ATTTGATATA AATAACTAGA GGGATAATAT TTACTGATTT 189101 .......... .......... .......... .......... .......... .......... 371 TGGATATAAA TATAAAAAAA AATAACTTTT TTTCGTACCA AATACATCCT AAATGATAAA 189041 .......... .......... .......... .......... .......... .......... 371 ATATAAATTT TTAAATTTCC ATGAGCTTTT TTTTATTTCT CTAATATGCA TTACTATTTC 188981 .......... .......... .......... .......... .......... .......... 371 AAGATTAGTC ACTAATTCAT AACAATATCG TGGTTTAGAA AATAAGAGAG ATAATTCATA 188921 .......... .......... .......... .......... .......... .......... 371 ATTAACTAAA CAAAAAATCT TAAGCATTTT AAGATTTCTC TCGAATGAGT AAATCGTGAT 188861 .......... .......... .......... .......... .......... .......... 371 TTGTTCACAC AACAATATTA AAACAACAAT GTACTAAGAT TCTATTCAAG CAGAAAACAT 188801 .......... .......... .......... .......... .......... .......... 371 GTGATGTTTT CACACAAGAC AATATTCAGA CACAAGTAAA ATTGAAAATC TATAAAAACA 188741 .......... .......... .......... .......... .......... .......... 371 AGTAATATGT GTTGTCAAAT TAATTTTAAT ATCATATTAA TAATTACCAT AAATAAAAAA 188681 .......... .......... .......... .......... .......... .......... 371 TTATAATTTT ATCTTAAAAT ATATTTTACG AGAAAGGGAG TTATCACTTA CTTGAGATGA 188621 .......... .......... .......... .......... .......... .......... 371 CAAGCACTAT TATTGGTAAG CAAATCAATG TATATTGTTT AAATTTGAAT GGTATTAAAT 188561 .......... .......... .......... .......... .......... .......... 371 TTTCATTGAT AATGTTGAAT AGAGCTTAGG CTAAAAGTAT TGCTTCAATT TTTTTTTTTT 188501 .......... .......... .......... .......... .......... .......... 371 TATAATGTCA TTCATTAATC CATATTTTAC TTTAAATAAA AATAAAATAT GTACGTCTAT 188441 .......... .......... .......... .......... .......... .......... 371 TAAACGGTAG ATATTTACTC AAAAAGTATA CGTTGATAAA AAGTATCATT TAATCGTGTT 188381 .......... .......... .......... .......... .......... .......... 371 AGACCATAAA TGTGTACGTA AAATATCAAT GTTGCACTTA ATTAATTTGG TGTAACTACA 188321 .......... .......... .......... .......... .......... .......... 371 AGAGGAATAT AAGTATTTAT TGTTTTAATT ACTTACTAGA TTTTTCACTT TAAGCTTTGT 188261 .......... .......... .......... .......... .......... .......... 371 GTATTTAATT TCATTAGGTT ATATTATTTC AGTGTTACAG AGTTTTATAA GAATAATAAT 188201 .......... .......... .......... .......... .......... .......... 371 TTCTTCTCTT TTTTTTAGAA TAATAATTTC TTCTTTTTTT TATTATTTTT ATAAGAACAA 188141 .......... .......... .......... .......... .......... .......... 371 TAATGAATTC ATTATTGTTG TTAAATTCTT ATTCTTATAT TTTTAAGGCC TTTGAAAAAA 188081 .......... .......... .......... .......... .......... .......... 371 AAGTTTTAAA ATGGCATCTT TGCCATTATG ATATAAAAGT AATTTTAATA TTATAATATA 188021 .......... .......... .......... .......... .......... .......... 371 AATATTTTAG AGTTGTCAAT TTTAAAATTA AAATGCAAGC AAACATAGAT AATATGATTT 187961 .......... .......... .......... .......... .......... .......... 371 AGTATTTTCT TGAAATTATT ATCTTTTATT CTACAAATAA AAATATACCC TATTTATGTT 187901 .......... .......... .......... .......... .......... .......... 371 AGATAAGATT TAGTCCCTAT TTAAAATCAC TAGTAATTTA TATCATGTTT TGGTTGAAAT 187841 .......... .......... .......... .......... .......... .......... 371 TGGAAAAAAT AATTATACTT AAAAGTTAGT ATTACCAACG TTTGGTTGTT AGTTTTTATT 187781 .......... .......... .......... .......... .......... .......... 371 TACAAGATAT ATAACAATTT ATAAGTTACC ATATATCTAT GTATAATTTT ACATACAGTA 187721 .......... .......... .......... .......... .......... .......... 371 AAATGTGGAA CAAATATAAA AATCTTAGCA ATACGTGAGC TTTTTTTTAA AATAATACCC 187661 .......... .......... .......... .......... .......... .......... 371 TAATAATATT AAATAACTTT TTCATATTTT ATTAAAGGAA CACACACATC TTTAAATTGT 187601 .......... .......... .......... .......... .......... .......... 371 ACATTATACT ATTTTATACT AAATTGATCA TTTAATAAAA AATATCTTTG TAATACTAAT 187541 .......... .......... .......... .......... .......... .......... 371 CAATGTATTA CTAATAGCTA TTACAATTTT CACGCTACTA ATCTTTCTCT AAAGTTAAAT 187481 .......... .......... .......... .......... .......... .......... 371 GACTACATTA TACATAATAA GTTGATACGA ATAATTTTAT AATAAAAAAA ATAAATCAAA 187421 .......... .......... .......... .......... .......... .......... 371 CTAAATATGT ATGCTTAGTG ATTTATTTAT GTCATTATTG TTCTTTTTTT TTCCAGCTTC 187361 || .......... .......... .......... .......... .......... ......AGTC 375 CAACAAATAA ATGATATAGT CAAAATCAAC AATAATATGT TTAGGTCCCA TCAAATCAAC 187301 | ||||| | AATAAAATAG CGG....... .......... .......... .......... .......... 388 CTATAATGAA TCAATATAAC ATGTGTCCTG CCTCAAGTAT ATATTTAATA TATAATAATA 187241 .......... .......... .......... .......... .......... .......... 388 ATCTGCCCTA ACTAAATATT GTATGTTTTT AGTGATTTTA TTTGTATCTT TTTTCTTCTT 187181 .......... .......... .......... .......... .......... .......... 388 TATTTTTTCA CCTTCCAACA AACAAATGAA TATAGTCAAA TTCAACAATC ACTTGTTCAA 187121 .......... .......... .......... .......... .......... .......... 388 GTCTCAACAA ATCAATCTAT GATGAATCAA TATAAAATGT ATCATGCCCC AAGGTATTTA 187061 .......... .......... .......... .......... .......... .......... 388 TTTGAGACAT AATAATATAC CCTCAACTTT TGTGACTAAT TAATGCATAT TTCTAATTTA 187001 .......... .......... .......... .......... .......... .......... 388 ATTTTATTAA TATATCATTT TAAATTTATA TTCTATAAAA TATTTAACTT TATGTCAAGC 186941 .......... .......... .......... .......... .......... .......... 388 CCAAGTTGAA TTCTTTTGTT GAACCCTCAC TTAATATGAA CCAGAATTTA TCTCCAGATG 186881 .......... .......... .......... .......... .......... .......... 388 TATTTTATTC TAGTGAAATC TTATTATTCT TTTATTTTTC AATTATCTAG ATAAATGTAA 186821 .......... .......... .......... .......... .......... .......... 388 TTGAGAAAGA CAATTAAGAT TTTTTTTTTG AATTTATTAA TTTTACATAT AACTAAATAA 186761 .......... .......... .......... .......... .......... .......... 388 ACAAATTTTA AAATTATTTA TTTTAATTAA AAATTCTAAT TCAACTTTAA AATTTCACAT 186701 .......... .......... .......... .......... .......... .......... 388 TTTAAAATTG ATCATTCAAC AATTCATCAG TATAATCACG CGAGCAATCC ATATCATCTT 186641 | |||||| .......... .......... .......... TCTAATCAA. .......... .......... 397 CAACATTCAA CTTGATATCT CATTCTCCAT GATTGATCCA TCTAGTATAA TCTTTAACAA 186581 .......... .......... .......... .......... .......... .......... 397 ATCCATAGCA TGTTAGATGA TCATACACTA CATTCCTTCG AGTCCAACGA ATATTACACC 186521 .......... .......... .......... .......... .......... .......... 397 ATTTTGCACA TGGACACTGA ATTTCCTCTC CATGAGGATT TCCATAAGAA TAAGCAAAAT 186461 .......... .......... .......... .......... .......... .......... 397 CTTGGAATAA TTCCACACCA TCAATATAGG GTTGGAGGAA TGATTCCACA CCATCAATAT 186401 .......... .......... .......... .......... .......... .......... 397 AGGGTTGGCT ATACCTTGCT AAATACATCC AATCCTTGGA TGGATATTTG AATTCCTATA 186341 .......... .......... .......... .......... .......... .......... 397 AGAAGATATA AATATTTGAT ATTTCAATAA GAATCATCAA ATTCATGATT AAGTTACCAA 186281 .......... .......... .......... .......... .......... .......... 397 AATCAGGTGT TATGAGATGA TAATATTTTC TTACGTAGTC CTGACACTTG TGTTATGCCA 186221 .......... .......... .......... .......... .......... .......... 397 AATCAAACTT TGAATCCTCC ACAAATGTTT TTGAATGTTG ATTTTTGTTA TAAGGGAAAA 186161 .......... .......... .......... .......... .......... .......... 397 TAAGTAAAAT TAGTAGGATA GAAAGAATTA AATAAGGCAG TGAATTATAG GATAGACAAA 186101 .......... .......... .......... .......... .......... .......... 397 ATTTAATGAA CTAATCAAGA ATAAGGAAAT TTTTCAAGAA TCTTGAAGTG TTCAAAGCTT 186041 .......... .......... .......... .......... .......... .......... 397 AACAGAATCC TGTGATAAGG TCTACTGGAA ACCTAATTTT AAAGAGTTCA TTATATTTTA 185981 .......... .......... .......... .......... .......... .......... 397 CTTCAATTGT TATGTAGCCT TCCAAAATCT AAAAATGGAA GAAAACCATT AAAATGATCT 185921 .......... .......... .......... .......... .......... .......... 397 AAAGCAAGCA AGTTGAACTA GCTTTTAAGT CTAATCAGAA CCTACCAGGA CTACAAAACA 185861 .......... .......... .......... .......... .......... .......... 397 AGTCAATTTA CTTCATCAAA AACTCATTCA GAAAAATAAG GGGAGCTAAC ATAGAAGACT 185801 .......... .......... .......... .......... .......... .......... 397 TTATATATAG CTTAATCTAT CTGTGAAGGG ATTTTCTTGA TTTCTATTCC TAGTTCTTGT 185741 .......... .......... .......... .......... .......... .......... 397 TCAATTCTAT ATGTCACAAT CAGATATATA CTTTTAGTAG TAGTAGAAAT CAACACATAG 185681 .......... .......... .......... .......... .......... .......... 397 AGCTTAATGA TCTAGTACAA AGTAAATGAA CATAATTAGT CCATACAAAG TGAAGTGATC 185621 .......... .......... .......... .......... .......... .......... 397 CTCAAAAGTA ACATGGCTAA CAACTAAACC AAACTTCACA AATCTCCCTA ATTGTCCAAC 185561 .......... .......... .......... .......... .......... .......... 397 CTGCAAAATA AATTACCAAA GATGAAATAG CAAAAAAATA TATAAGCCAA TAAGCAAGAT 185501 .......... .......... .......... .......... .......... .......... 397 CAAATATATG TTATACATAC CCTGTGCAAA TACGTTTCTG TGTTCTTAGG AAAATCAGAA 185441 .......... .......... .......... .......... .......... .......... 397 TTGATAACAA CGTTAACTGC TTGAATATCA ATTCCTCTAG TAAACAAATC TAATCTATTA 185381 .......... .......... .......... .......... .......... .......... 397 ATAAAGAACA CAAAATTATG AAATTTAACA ATTAATCAAT TTTAAATTTC AGTTGTAAGA 185321 .......... .......... .......... .......... .......... .......... 397 GCCCCAAAAG TAATCAATTT CTTCTAAACA CAAAATAAAA ATTTCTTCTA AAAACAAACT 185261 .......... .......... .......... .......... .......... .......... 397 ACTGATCCAA ACAAGTTCAT CAAAAGAATA AATCCTAGTA GTATAAACAA ATTGGCTACT 185201 .......... .......... .......... .......... .......... .......... 397 TAATGTAGTA TCGATGAGTA CTACGAATGA TTAGCACTAT AAACCAAAGA ATCCATTAGC 185141 .......... .......... .......... .......... .......... .......... 397 TTCTAGGTTC CAAGAAACAA ATAAATAATG GAATGCTATC CAAAACCGAA ACAAGACGGA 185081 .......... .......... .......... .......... .......... .......... 397 ACTATAAATA TATTGAAGCA TGCTGGAAAT GGATCTATTG AACTTTAAAT TGTTACAAAC 185021 .......... .......... .......... .......... .......... .......... 397 TTACTCACTT AGAAGCAAAT ATGGACAGAA ATTTGAAACA TCTGAAAATA TGAAGCTATG 184961 .......... .......... .......... .......... .......... .......... 397 TTCTGGTTTA AGAGCAGAAC TATGAAGAAT TATTATCATA CACTCTCACC ACATTCTTTT 184901 .......... .......... .......... .......... .......... .......... 397 CATATTTTGA ATGTCCAAAA CAACTTGACA GAACTGATAT TACTCAAGGA CAAATGCAAC 184841 .......... .......... .......... .......... .......... .......... 397 CAGTAAATAA AATTACAGTA GTAAAATGAA GACACATACT GAGAATTATT CATCAATACT 184781 .......... .......... .......... .......... .......... .......... 397 CAGCAATCAT GAAGTAAAAT TACAGAATGT CACTGGAAAT GCAACATCTA GTACAAAAGT 184721 .......... .......... .......... .......... .......... .......... 397 TCCAGCAACT CATTTGTAGG TTTGAATTCT TTGGGTGCAA ACATATTTAT AGGGAAGAAA 184661 .......... .......... .......... .......... .......... .......... 397 ACTAAACAAC TAACTAACTA TCCAAATGAA GCCACATATT GGACATTATT GATCAATAAT 184601 .......... .......... .......... .......... .......... .......... 397 ATACAGAAAA ACAATACCCT CTACTGCTAA GGGTAGCTAT TTTTTAGAAA AAAACATAGA 184541 .......... .......... .......... .......... .......... .......... 397 TGAAAAACTT CAGGATAAGG AAGCTCAAGA GAATGAAGAA CACACCTTAA GAATCCACCT 184481 .......... .......... .......... .......... .......... .......... 397 TGAACCCTCA AATAATCAGA ATCAGAATCA TATGTTATGG GATGATCATA ATTATTGTGA 184421 .......... .......... .......... .......... .......... .......... 397 GTTTTGAGTT TCGAGTACCT TGTTACTATT CTTGATTCTA ATAAATACAT AATAATAACT 184361 .......... .......... .......... .......... .......... .......... 397 ACAAAATTGT ATGTCATTAT TTCATGGATG AAATATAGTC ATTTTACTGT TAAGAGATCA 184301 .......... .......... .......... .......... .......... .......... 397 GAAATACCTT GATTTTTGAT GTCTACATAA TGTTAGTTTC CTCTCAGCAA AACCTGAAAT 184241 .......... .......... .......... .......... .......... .......... 397 AGCAGAGAAT ATTTCATGGT TTAGAAAAAA GTTTGATCGA AGTGTTCGTA TGCAAAAGTA 184181 .......... .......... .......... .......... .......... .......... 397 AAAAATTACA GAAATAGTAT CTTTATACAG ACAACAAGAG ATTTTATTTC TTTTAGAGGA 184121 .......... .......... .......... .......... .......... .......... 397 AAAATAAAAA CTGTAGCATG CTATTTCGGA AGGCTAATGA ACAGTGAGAC ATCTCTTCTT 184061 | | | | || .......... .......... .......... ..G-TCCTAA GCA....... .......... 407 ACATTGCAAC TTTACTAGGC AACTGCAATG TAATACAAAT GTTTTTCAGT ACTACCTAAG 184001 .......... .......... .......... .......... .......... .......... 407 TACTATTTGA AATAAAAATG TTACTAGTTT AAAAATAATT TTATAGAAAA CATATCTTTT 183941 .......... .......... .......... .......... .......... .......... 407 ACTATATATT CTAGTAGATT GCAGATTCTG TGAAGTATTT CTATTAATCG AGATCCATAT 183881 .......... .......... .......... .......... .......... .......... 407 GATATGCTTG GAACATAAAA AACAGAAATA TAATAAAGCA TATAAATTGA GTTGATAAGG 183821 .......... .......... .......... .......... .......... .......... 407 ATAAACAAAA TAAGAAAACA TAAAAAATCA GAAATATATT AAAGCATATA AGCTTTTTCA 183761 .......... .......... .......... .......... .......... .......... 407 GTTCGTTAGT CATCATTATA TCTCCAATAT CAATGTAGAA AAGGGGGAAG ATGACACACA 183701 .......... .......... .......... .......... .......... .......... 407 TTGATCAAAG TACTCCAAAT TTACAAAAAC ATAGAACATG ATGAATCATT GTCTACTCCC 183641 .......... .......... .......... .......... .......... .......... 407 AAGGCTGAAA CATCTTCCTA CACTATTATC CAATCATTTT CTGCTTGATT AAGAAAAAAT 183581 .......... .......... .......... .......... .......... .......... 407 CAGGCTCAA 183572 || ||| ...GCCCAA 413 hqPGS_C01HBa0216G16.1-_SGN-U335137+ (190000 189941,189788 189727,189678 189571) ******************************************************************************** EST sequence 8 -strand 2089 n (File: SGN-U315404-) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGGG GGAATATATA TATATATATA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA ATTATATAAT TGCAGTGAAA 661 TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT TGTGTTTTTG TTTTTGTATA 721 AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT AATTATGCAA TATACATACA 781 TTTTAATTCG ATTCAACGGT ATGCAAAGCA AATTTATAAA AATATTGCAG CGAAATAAGC 841 AGCGATTTAT ACGATTGTGC ATTACACAAT CGCAGTGAAT GAAGATAGCG AATTATACAA 901 TTGCAGCGAA ATAGGCCATC AAATTATACA ATTTAGGCCA GCGAATTATA CAATTGTATA 961 TGTATAGCGA ATTATACAGT TTTATGTTTG CTATGGAGCG CAATTATGCA AACTTTGTTA 1021 TAACATACAA ATATGAATTT TTTATTTGCT ATACGTGAAA GTTGCCCTTA ATTAAATGCT 1081 CCACAGTCTA TACGAATATT TCCATTCTTA CCCGTCTTCA CACCAACTCG GCCCAATTTA 1141 GTCATCGCAT TAACAAATGC GGTTTCAAAA ACTTTAAAAT TACTGGCCCA CAAATTAACA 1201 GTACCTTTAG ACCTTTGGTC TGTGAACAAA ACTTGATCTG ATGTGAATAG GCCCATTCCG 1261 TTTTGCAAGT TTTGGAAATA CACATTGTCA AAAGCCCTAG GTGTTATTGG GTCCATGTTG 1321 ATGGCTATTC TTGGGTCCAC ATTTTTCGGA CACATTTGTT CTAATTGGGC TGCATACGTC 1381 TTGTTGAGAC TTGGATCCAC TGGGTTTTTA GGGTTAAAGT TGAAAATTCG GTTCGAGAAT 1441 TGGTCGCAGT GAGAAAATCC AACAGTATGG GCCGCAGATA AGGCAATCAT ATCAGCCTGA 1501 TTTAAACCAT GAGAGGCAAA CATTGTATTG AGTTGATCCA AATTGAAAGT AGGTTTAGGC 1561 AACTTTCCCC CTACATTTGT AGATTTTGAT GTCAAACCAT CTAATCTCCC CAATTCCACT 1621 GCATACCCCG GTCCACCGGA TAGTTGAATA ACATCTCGAG TGGCTAAGGC AAGAATATCA 1681 GCACAAGAAA CTTTATTTTT ACAACTTGGG ATCGCATCAA CTGCGGCTTT TGCTTTGATA 1741 ACTGTGTCAA ATCCATCTCC AGCCAATGAA AGATTATCTG GGTGATCTTT TTCTGCTGTG 1801 TTCCCTGCCG TTGATGCTAT TATCACCGAT GCATCACAAC CCTCAACAAA GCAATCATGG 1861 AAGAAAAGAC GAAGAACAGC CGGAATTGTG ACAAACGTTT GTTTGAATTT CTGGTTAACA 1921 ACATTACGCA CAATGGATTC AACATTAGGA CAAGTTTGGG CATAAAAATT GGTTTTGAGT 1981 TGAGCATCTA CCAAGTTTGG CATGAAAATA CTAACACAAG AAATTGACAA AAATGATGTA 2041 ATAAAAACTT GTAAATAACC CATATTTTTT TCTATATATA ATCAAAAAT Predicted gene structure (within gDNA segment 194088 to 179086): Exon 1 190646 190566 ( 81 n); cDNA 225 306 ( 82 n); score: 0.605 Intron 1 190565 190282 ( 284 n); Pd: 0.000 (s: 0.58), Pa: 0.000 (s: 0.80) Exon 2 190281 189735 ( 547 n); cDNA 307 859 ( 553 n); score: 0.888 Intron 2 189734 186671 (3064 n); Pd: 0.000 (s: 0.61), Pa: 0.658 (s: 0) Exon 3 186670 186662 ( 9 n); cDNA 860 867 ( 8 n); score: 0.667 Intron 3 186661 183578 (3084 n); Pd: 0.951 (s: 0), Pa: 0.715 (s: 0) Exon 4 183577 183568 ( 10 n); cDNA 868 877 ( 10 n); score: 0.500 Intron 4 183567 183006 ( 562 n); Pd: 0.900 (s: 0), Pa: 0.845 (s: 0) Exon 5 183005 182994 ( 12 n); cDNA 878 889 ( 12 n); score: 0.833 Intron 5 182993 181494 (1500 n); Pd: 0.000 (s: 0), Pa: 0.164 (s: 0) Exon 6 181493 181468 ( 26 n); cDNA 890 914 ( 25 n); score: 0.615 PPA cDNA 19 1 MATCH C01HBa0216G16.1- SGN-U315404- 0.852 685 0.328 C PGS_C01HBa0216G16.1-_SGN-U315404- (190646 190566,190281 189735,186670 186662,183577 183568,183005 182994,181493 181468) Alignment (genomic DNA sequence = upper lines): TAAATT-TAT TTTTATAATT TTAGCTTATA ATTCA-ACGC TTTAGTTATA AATAATTTTA 190589 |||||| | |||| ||| || ||| | ||||| | || || || || ||| |||| TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA AATCTTTTTC 284 AATTTACTCA AATTCCTAAA AACATTATTT TATCTTAAAA ATACTTCACT AAATCAATCT 190529 || ||| | || || | | | -CTTCTCTCC ATTTTATACA AGC....... .......... .......... .......... 306 AAATATATTC TAAAACTATT AAGCAATAGA CACAAAAATA ACAGAAGGGG CTCAAACATG 190469 .......... .......... .......... .......... .......... .......... 306 AAAGCACATT GCTCTAATTT ATCAAAATCA TCAATATTTT GTAAGTGTGA TGTAGTTGGT 190409 .......... .......... .......... .......... .......... .......... 306 AAAAAAAGAA AGATTAATTT TGAATGTATC ATATATTTTA GGGATGAAGA AAGAAATAAT 190349 .......... .......... .......... .......... .......... .......... 306 ATTTTAAAAA GTATCAAACA AAACATATAA GTGGCATGTA GGGCCTACTT TTTCATTTGA 190289 .......... .......... .......... .......... .......... .......... 306 CAATTTATTA AGGGAAAATT ATATATAATA GCAAACTAAC AGCCTAAATT AAATGGAATA 190229 | ||||||||| ||||||||| |||||||| | |||| | ||||||| || .......TCT TGGGAAAATT GTATATAATA GCAAACTAGT AATCTAA-CT AAATGGAGTA 358 GCTAGGGTTT GATTTAATTG TGCTCCATAG CAAACATTAG TTAAAATTTG TCA-GCGTCT 190170 ||||| |||| |||||||||| |||||||||| ||||| |||| |||| |||| ||| |||||| GCTAGAGTTT GATTTAATTG TGCTCCATAG CAAACGTTAG CTAAAGTTTG TCAGGCGTCT 418 CTCTCTCAAA AATCTCGCTC GCCACTCTCC ATTCTCGCTC GCCTCTCTCG CTTTATACAC 190110 | ||| |||| |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| CCCTCCCAAA AATCTCGCTC GCCACTCTCC ATTCTCGCTC GCCTATCTCG CTATATACAC 478 AGAAGTGTAT -AATTCTGTT TCTGTTTTAT ATAAAGCGAG AGAAAATTGT ATATACACAT 190051 |||||||||| ||||||||| ||| |||| | |||||||||| |||||||||| |||||||||| AGAAGTGTAT AAATTCTGTT TCTATTTTGT ATAAAGCGAG AGAAAATTGT ATATACACAT 538 GCAAAAATGT ATATCTTCGT GTTATACACT TAATTATACA ATTTACAAAC ATTTTACTTC 189991 | |||||| | |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GTAAAAATAT ATATCTTCGT GTTATACACT TAATTATACA AATTACAAAC ATTTTACTTC 598 AAATATTGCA GAGAAAAAGG CCAACGAATT ATACAATTGT GAATTATACA ATTGTAGTGA 189931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||| ||||| AAATATTGCA GAGAAAAAGG CCAACGAATT ATACAATTGT GAATTATATA ATTGCAGTGA 658 AATACAATTT TCTCTAGCTT TATACAACAG AAGTGTATAT ATTGTGTTTC TGTTTTTGTG 189871 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| ||||||||| AATACAATTT TCTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT TGTTTTTGTA 718 TAAAGCGAG- -AAAAACATA TATCTTCTTG CTATACACTT ATAATTATGC AATATACATA 189813 ||||||||| ||||||||| ||| |||||| | |||||||| |||||||||| |||||||||| TAAAGCGAGA CAAAAACATA TATATTCTTG CCATACACTT ATAATTATGC AATATACATA 778 CATTTTAATT CGATTCAACT GTATGCAAAA CAAA-TTAT- -ACA-ATTGC GGCGAAATAG 189757 |||||||||| ||||||||| ||||||||| |||| |||| | | ||||| |||||||| CATTTTAATT CGATTCAACG GTATGCAAAG CAAATTTATA AAAATATTGC AGCGAAATAA 838 GCCAGCGAAT TATACAATTT AGGCCAGCGA ATTATACAAT TTAGGCCAAC GAATTATACA 189697 | |||||| | ||||| ||| | G-CAGCGATT TATACGATTG TG........ .......... .......... .......... 859 ATTATATATG TATAGCAAAT TATACAATTT TATGTTTGCT ATGGAGCGCA ATTATACAAA 189637 .......... .......... .......... .......... .......... .......... 859 GTTTGCTATA GCATAAAAAT ATAAATTTTT TATTTGCTAT ACGTAAAAGT TGCCCATTTA 189577 .......... .......... .......... .......... .......... .......... 859 TTAATGGCAC CCATATAACT ACTGTCCCCT AGATTCACGA AAATCTTGTG ACAAAATAAA 189517 .......... .......... .......... .......... .......... .......... 859 AAGTAAATGA CACAAAGAAA GAAAGAAATT TGACACAAGC AATGATTAAA AGAACAGACA 189457 .......... .......... .......... .......... .......... .......... 859 CAAATCTTAA ATAAAAATAA AAAAACTTCA TAATCACTGA TACATGTATC TTTCGTGTAA 189397 .......... .......... .......... .......... .......... .......... 859 GTTAGTTATG ATCGTATTTT GTACTTTTTG TGTTTTGGTG TCTTAAATGC ATGATATTTT 189337 .......... .......... .......... .......... .......... .......... 859 CTAATGGAGA TTAATTAAAA TATTATATAT CAAAATTTTT TCTATTATGA ATCGAACTCA 189277 .......... .......... .......... .......... .......... .......... 859 AGATCTTTAG TTAAAAAGAA TAATTGCATC GTATACATCA TATTTTCTTA CTTAACACTA 189217 .......... .......... .......... .......... .......... .......... 859 TTAATTATGC TTTACTGTTG TATTAATCAA TTTAATCTTA ACAGTTGTGT GTATATCTAG 189157 .......... .......... .......... .......... .......... .......... 859 TTTTCACACT AAATAAATTT GATATAAATA ACTAGAGGGA TAATATTTAC TGATTTTGGA 189097 .......... .......... .......... .......... .......... .......... 859 TATAAATATA AAAAAAAATA ACTTTTTTTC GTACCAAATA CATCCTAAAT GATAAAATAT 189037 .......... .......... .......... .......... .......... .......... 859 AAATTTTTAA ATTTCCATGA GCTTTTTTTT ATTTCTCTAA TATGCATTAC TATTTCAAGA 188977 .......... .......... .......... .......... .......... .......... 859 TTAGTCACTA ATTCATAACA ATATCGTGGT TTAGAAAATA AGAGAGATAA TTCATAATTA 188917 .......... .......... .......... .......... .......... .......... 859 ACTAAACAAA AAATCTTAAG CATTTTAAGA TTTCTCTCGA ATGAGTAAAT CGTGATTTGT 188857 .......... .......... .......... .......... .......... .......... 859 TCACACAACA ATATTAAAAC AACAATGTAC TAAGATTCTA TTCAAGCAGA AAACATGTGA 188797 .......... .......... .......... .......... .......... .......... 859 TGTTTTCACA CAAGACAATA TTCAGACACA AGTAAAATTG AAAATCTATA AAAACAAGTA 188737 .......... .......... .......... .......... .......... .......... 859 ATATGTGTTG TCAAATTAAT TTTAATATCA TATTAATAAT TACCATAAAT AAAAAATTAT 188677 .......... .......... .......... .......... .......... .......... 859 AATTTTATCT TAAAATATAT TTTACGAGAA AGGGAGTTAT CACTTACTTG AGATGACAAG 188617 .......... .......... .......... .......... .......... .......... 859 CACTATTATT GGTAAGCAAA TCAATGTATA TTGTTTAAAT TTGAATGGTA TTAAATTTTC 188557 .......... .......... .......... .......... .......... .......... 859 ATTGATAATG TTGAATAGAG CTTAGGCTAA AAGTATTGCT TCAATTTTTT TTTTTTTATA 188497 .......... .......... .......... .......... .......... .......... 859 ATGTCATTCA TTAATCCATA TTTTACTTTA AATAAAAATA AAATATGTAC GTCTATTAAA 188437 .......... .......... .......... .......... .......... .......... 859 CGGTAGATAT TTACTCAAAA AGTATACGTT GATAAAAAGT ATCATTTAAT CGTGTTAGAC 188377 .......... .......... .......... .......... .......... .......... 859 CATAAATGTG TACGTAAAAT ATCAATGTTG CACTTAATTA ATTTGGTGTA ACTACAAGAG 188317 .......... .......... .......... .......... .......... .......... 859 GAATATAAGT ATTTATTGTT TTAATTACTT ACTAGATTTT TCACTTTAAG CTTTGTGTAT 188257 .......... .......... .......... .......... .......... .......... 859 TTAATTTCAT TAGGTTATAT TATTTCAGTG TTACAGAGTT TTATAAGAAT AATAATTTCT 188197 .......... .......... .......... .......... .......... .......... 859 TCTCTTTTTT TTAGAATAAT AATTTCTTCT TTTTTTTATT ATTTTTATAA GAACAATAAT 188137 .......... .......... .......... .......... .......... .......... 859 GAATTCATTA TTGTTGTTAA ATTCTTATTC TTATATTTTT AAGGCCTTTG AAAAAAAAGT 188077 .......... .......... .......... .......... .......... .......... 859 TTTAAAATGG CATCTTTGCC ATTATGATAT AAAAGTAATT TTAATATTAT AATATAAATA 188017 .......... .......... .......... .......... .......... .......... 859 TTTTAGAGTT GTCAATTTTA AAATTAAAAT GCAAGCAAAC ATAGATAATA TGATTTAGTA 187957 .......... .......... .......... .......... .......... .......... 859 TTTTCTTGAA ATTATTATCT TTTATTCTAC AAATAAAAAT ATACCCTATT TATGTTAGAT 187897 .......... .......... .......... .......... .......... .......... 859 AAGATTTAGT CCCTATTTAA AATCACTAGT AATTTATATC ATGTTTTGGT TGAAATTGGA 187837 .......... .......... .......... .......... .......... .......... 859 AAAAATAATT ATACTTAAAA GTTAGTATTA CCAACGTTTG GTTGTTAGTT TTTATTTACA 187777 .......... .......... .......... .......... .......... .......... 859 AGATATATAA CAATTTATAA GTTACCATAT ATCTATGTAT AATTTTACAT ACAGTAAAAT 187717 .......... .......... .......... .......... .......... .......... 859 GTGGAACAAA TATAAAAATC TTAGCAATAC GTGAGCTTTT TTTTAAAATA ATACCCTAAT 187657 .......... .......... .......... .......... .......... .......... 859 AATATTAAAT AACTTTTTCA TATTTTATTA AAGGAACACA CACATCTTTA AATTGTACAT 187597 .......... .......... .......... .......... .......... .......... 859 TATACTATTT TATACTAAAT TGATCATTTA ATAAAAAATA TCTTTGTAAT ACTAATCAAT 187537 .......... .......... .......... .......... .......... .......... 859 GTATTACTAA TAGCTATTAC AATTTTCACG CTACTAATCT TTCTCTAAAG TTAAATGACT 187477 .......... .......... .......... .......... .......... .......... 859 ACATTATACA TAATAAGTTG ATACGAATAA TTTTATAATA AAAAAAATAA ATCAAACTAA 187417 .......... .......... .......... .......... .......... .......... 859 ATATGTATGC TTAGTGATTT ATTTATGTCA TTATTGTTCT TTTTTTTTCC AGCTTCCAAC 187357 .......... .......... .......... .......... .......... .......... 859 AAATAAATGA TATAGTCAAA ATCAACAATA ATATGTTTAG GTCCCATCAA ATCAACCTAT 187297 .......... .......... .......... .......... .......... .......... 859 AATGAATCAA TATAACATGT GTCCTGCCTC AAGTATATAT TTAATATATA ATAATAATCT 187237 .......... .......... .......... .......... .......... .......... 859 GCCCTAACTA AATATTGTAT GTTTTTAGTG ATTTTATTTG TATCTTTTTT CTTCTTTATT 187177 .......... .......... .......... .......... .......... .......... 859 TTTTCACCTT CCAACAAACA AATGAATATA GTCAAATTCA ACAATCACTT GTTCAAGTCT 187117 .......... .......... .......... .......... .......... .......... 859 CAACAAATCA ATCTATGATG AATCAATATA AAATGTATCA TGCCCCAAGG TATTTATTTG 187057 .......... .......... .......... .......... .......... .......... 859 AGACATAATA ATATACCCTC AACTTTTGTG ACTAATTAAT GCATATTTCT AATTTAATTT 186997 .......... .......... .......... .......... .......... .......... 859 TATTAATATA TCATTTTAAA TTTATATTCT ATAAAATATT TAACTTTATG TCAAGCCCAA 186937 .......... .......... .......... .......... .......... .......... 859 GTTGAATTCT TTTGTTGAAC CCTCACTTAA TATGAACCAG AATTTATCTC CAGATGTATT 186877 .......... .......... .......... .......... .......... .......... 859 TTATTCTAGT GAAATCTTAT TATTCTTTTA TTTTTCAATT ATCTAGATAA ATGTAATTGA 186817 .......... .......... .......... .......... .......... .......... 859 GAAAGACAAT TAAGATTTTT TTTTTGAATT TATTAATTTT ACATATAACT AAATAAACAA 186757 .......... .......... .......... .......... .......... .......... 859 ATTTTAAAAT TATTTATTTT AATTAAAAAT TCTAATTCAA CTTTAAAATT TCACATTTTA 186697 .......... .......... .......... .......... .......... .......... 859 AAATTGATCA TTCAACAATT CATCAGTATA ATCACGCGAG CAATCCATAT CATCTTCAAC 186637 || | ||| .......... .......... ......CATT A-CAC..... .......... .......... 867 ATTCAACTTG ATATCTCATT CTCCATGATT GATCCATCTA GTATAATCTT TAACAAATCC 186577 .......... .......... .......... .......... .......... .......... 867 ATAGCATGTT AGATGATCAT ACACTACATT CCTTCGAGTC CAACGAATAT TACACCATTT 186517 .......... .......... .......... .......... .......... .......... 867 TGCACATGGA CACTGAATTT CCTCTCCATG AGGATTTCCA TAAGAATAAG CAAAATCTTG 186457 .......... .......... .......... .......... .......... .......... 867 GAATAATTCC ACACCATCAA TATAGGGTTG GAGGAATGAT TCCACACCAT CAATATAGGG 186397 .......... .......... .......... .......... .......... .......... 867 TTGGCTATAC CTTGCTAAAT ACATCCAATC CTTGGATGGA TATTTGAATT CCTATAAGAA 186337 .......... .......... .......... .......... .......... .......... 867 GATATAAATA TTTGATATTT CAATAAGAAT CATCAAATTC ATGATTAAGT TACCAAAATC 186277 .......... .......... .......... .......... .......... .......... 867 AGGTGTTATG AGATGATAAT ATTTTCTTAC GTAGTCCTGA CACTTGTGTT ATGCCAAATC 186217 .......... .......... .......... .......... .......... .......... 867 AAACTTTGAA TCCTCCACAA ATGTTTTTGA ATGTTGATTT TTGTTATAAG GGAAAATAAG 186157 .......... .......... .......... .......... .......... .......... 867 TAAAATTAGT AGGATAGAAA GAATTAAATA AGGCAGTGAA TTATAGGATA GACAAAATTT 186097 .......... .......... .......... .......... .......... .......... 867 AATGAACTAA TCAAGAATAA GGAAATTTTT CAAGAATCTT GAAGTGTTCA AAGCTTAACA 186037 .......... .......... .......... .......... .......... .......... 867 GAATCCTGTG ATAAGGTCTA CTGGAAACCT AATTTTAAAG AGTTCATTAT ATTTTACTTC 185977 .......... .......... .......... .......... .......... .......... 867 AATTGTTATG TAGCCTTCCA AAATCTAAAA ATGGAAGAAA ACCATTAAAA TGATCTAAAG 185917 .......... .......... .......... .......... .......... .......... 867 CAAGCAAGTT GAACTAGCTT TTAAGTCTAA TCAGAACCTA CCAGGACTAC AAAACAAGTC 185857 .......... .......... .......... .......... .......... .......... 867 AATTTACTTC ATCAAAAACT CATTCAGAAA AATAAGGGGA GCTAACATAG AAGACTTTAT 185797 .......... .......... .......... .......... .......... .......... 867 ATATAGCTTA ATCTATCTGT GAAGGGATTT TCTTGATTTC TATTCCTAGT TCTTGTTCAA 185737 .......... .......... .......... .......... .......... .......... 867 TTCTATATGT CACAATCAGA TATATACTTT TAGTAGTAGT AGAAATCAAC ACATAGAGCT 185677 .......... .......... .......... .......... .......... .......... 867 TAATGATCTA GTACAAAGTA AATGAACATA ATTAGTCCAT ACAAAGTGAA GTGATCCTCA 185617 .......... .......... .......... .......... .......... .......... 867 AAAGTAACAT GGCTAACAAC TAAACCAAAC TTCACAAATC TCCCTAATTG TCCAACCTGC 185557 .......... .......... .......... .......... .......... .......... 867 AAAATAAATT ACCAAAGATG AAATAGCAAA AAAATATATA AGCCAATAAG CAAGATCAAA 185497 .......... .......... .......... .......... .......... .......... 867 TATATGTTAT ACATACCCTG TGCAAATACG TTTCTGTGTT CTTAGGAAAA TCAGAATTGA 185437 .......... .......... .......... .......... .......... .......... 867 TAACAACGTT AACTGCTTGA ATATCAATTC CTCTAGTAAA CAAATCTAAT CTATTAATAA 185377 .......... .......... .......... .......... .......... .......... 867 AGAACACAAA ATTATGAAAT TTAACAATTA ATCAATTTTA AATTTCAGTT GTAAGAGCCC 185317 .......... .......... .......... .......... .......... .......... 867 CAAAAGTAAT CAATTTCTTC TAAACACAAA ATAAAAATTT CTTCTAAAAA CAAACTACTG 185257 .......... .......... .......... .......... .......... .......... 867 ATCCAAACAA GTTCATCAAA AGAATAAATC CTAGTAGTAT AAACAAATTG GCTACTTAAT 185197 .......... .......... .......... .......... .......... .......... 867 GTAGTATCGA TGAGTACTAC GAATGATTAG CACTATAAAC CAAAGAATCC ATTAGCTTCT 185137 .......... .......... .......... .......... .......... .......... 867 AGGTTCCAAG AAACAAATAA ATAATGGAAT GCTATCCAAA ACCGAAACAA GACGGAACTA 185077 .......... .......... .......... .......... .......... .......... 867 TAAATATATT GAAGCATGCT GGAAATGGAT CTATTGAACT TTAAATTGTT ACAAACTTAC 185017 .......... .......... .......... .......... .......... .......... 867 TCACTTAGAA GCAAATATGG ACAGAAATTT GAAACATCTG AAAATATGAA GCTATGTTCT 184957 .......... .......... .......... .......... .......... .......... 867 GGTTTAAGAG CAGAACTATG AAGAATTATT ATCATACACT CTCACCACAT TCTTTTCATA 184897 .......... .......... .......... .......... .......... .......... 867 TTTTGAATGT CCAAAACAAC TTGACAGAAC TGATATTACT CAAGGACAAA TGCAACCAGT 184837 .......... .......... .......... .......... .......... .......... 867 AAATAAAATT ACAGTAGTAA AATGAAGACA CATACTGAGA ATTATTCATC AATACTCAGC 184777 .......... .......... .......... .......... .......... .......... 867 AATCATGAAG TAAAATTACA GAATGTCACT GGAAATGCAA CATCTAGTAC AAAAGTTCCA 184717 .......... .......... .......... .......... .......... .......... 867 GCAACTCATT TGTAGGTTTG AATTCTTTGG GTGCAAACAT ATTTATAGGG AAGAAAACTA 184657 .......... .......... .......... .......... .......... .......... 867 AACAACTAAC TAACTATCCA AATGAAGCCA CATATTGGAC ATTATTGATC AATAATATAC 184597 .......... .......... .......... .......... .......... .......... 867 AGAAAAACAA TACCCTCTAC TGCTAAGGGT AGCTATTTTT TAGAAAAAAA CATAGATGAA 184537 .......... .......... .......... .......... .......... .......... 867 AAACTTCAGG ATAAGGAAGC TCAAGAGAAT GAAGAACACA CCTTAAGAAT CCACCTTGAA 184477 .......... .......... .......... .......... .......... .......... 867 CCCTCAAATA ATCAGAATCA GAATCATATG TTATGGGATG ATCATAATTA TTGTGAGTTT 184417 .......... .......... .......... .......... .......... .......... 867 TGAGTTTCGA GTACCTTGTT ACTATTCTTG ATTCTAATAA ATACATAATA ATAACTACAA 184357 .......... .......... .......... .......... .......... .......... 867 AATTGTATGT CATTATTTCA TGGATGAAAT ATAGTCATTT TACTGTTAAG AGATCAGAAA 184297 .......... .......... .......... .......... .......... .......... 867 TACCTTGATT TTTGATGTCT ACATAATGTT AGTTTCCTCT CAGCAAAACC TGAAATAGCA 184237 .......... .......... .......... .......... .......... .......... 867 GAGAATATTT CATGGTTTAG AAAAAAGTTT GATCGAAGTG TTCGTATGCA AAAGTAAAAA 184177 .......... .......... .......... .......... .......... .......... 867 ATTACAGAAA TAGTATCTTT ATACAGACAA CAAGAGATTT TATTTCTTTT AGAGGAAAAA 184117 .......... .......... .......... .......... .......... .......... 867 TAAAAACTGT AGCATGCTAT TTCGGAAGGC TAATGAACAG TGAGACATCT CTTCTTACAT 184057 .......... .......... .......... .......... .......... .......... 867 TGCAACTTTA CTAGGCAACT GCAATGTAAT ACAAATGTTT TTCAGTACTA CCTAAGTACT 183997 .......... .......... .......... .......... .......... .......... 867 ATTTGAAATA AAAATGTTAC TAGTTTAAAA ATAATTTTAT AGAAAACATA TCTTTTACTA 183937 .......... .......... .......... .......... .......... .......... 867 TATATTCTAG TAGATTGCAG ATTCTGTGAA GTATTTCTAT TAATCGAGAT CCATATGATA 183877 .......... .......... .......... .......... .......... .......... 867 TGCTTGGAAC ATAAAAAACA GAAATATAAT AAAGCATATA AATTGAGTTG ATAAGGATAA 183817 .......... .......... .......... .......... .......... .......... 867 ACAAAATAAG AAAACATAAA AAATCAGAAA TATATTAAAG CATATAAGCT TTTTCAGTTC 183757 .......... .......... .......... .......... .......... .......... 867 GTTAGTCATC ATTATATCTC CAATATCAAT GTAGAAAAGG GGGAAGATGA CACACATTGA 183697 .......... .......... .......... .......... .......... .......... 867 TCAAAGTACT CCAAATTTAC AAAAACATAG AACATGATGA ATCATTGTCT ACTCCCAAGG 183637 .......... .......... .......... .......... .......... .......... 867 CTGAAACATC TTCCTACACT ATTATCCAAT CATTTTCTGC TTGATTAAGA AAAAATCAGG 183577 .......... .......... .......... .......... .......... .........A 868 CTCAAAATGA TATCCCTATT GACCTGGCGA CTACTATTAT CACTACCAAG AAAATAGCCA 183517 || | || ATCGCAGTG. .......... .......... .......... .......... .......... 877 GCTGGAGCAA CAACTACACA CACAAATCAA CAACCAAATA TGGAGAAGGC AAATGAGCTA 183457 .......... .......... .......... .......... .......... .......... 877 TGAGATGAGC AATGGAAAGT TTTAAATAAG GAGAACTACA GGCAAAACTG ACACACTTTG 183397 .......... .......... .......... .......... .......... .......... 877 GGAAGAAATA ATCATGTAAG ACACTTAACT CTACTATTTC TACTCATAAT AACTATAATG 183337 .......... .......... .......... .......... .......... .......... 877 ATCTTTTTTT CATGGTCAAA CTAATAATCA ACAAGAACAA GAAAACCACC TTCACAATTG 183277 .......... .......... .......... .......... .......... .......... 877 GATACATCAA TAAAGGAAAT ACATCAACAA ACAAAATAAA GGATGATTTG AATAAAGAAA 183217 .......... .......... .......... .......... .......... .......... 877 ACTAGGAAAA ATCGAGGAAA ATACAGTCGA GACGTTCCAG AAGAGAGAAA GAGAGAGAAA 183157 .......... .......... .......... .......... .......... .......... 877 AGACTTAAGT AACAAATAAA ATACCTCAAC TATCAGCAAC CAAATATACA ATAAAAGACG 183097 .......... .......... .......... .......... .......... .......... 877 CAGTAACAAG CCAAAAACAA AAAAAGAGAA AAAATACATT CATAAACTGA TTCTGCCAAT 183037 .......... .......... .......... .......... .......... .......... 877 GCTTTGAAAA TAATTTGATG TTTAGTAACA GAAGGAAGTT AGCATCTAGG ATTTTAGGCA 182977 || |||| | ||| .......... .......... .......... .AATGAAGAT AGC....... .......... 889 AATAATACAG ACGATTCCAA CTTACTATCA TTTTATTGAC GAATTGATAT GCAAAAAAGG 182917 .......... .......... .......... .......... .......... .......... 889 CAAACAATAC AGACGATTCA AAGTATAAAA CAAGGACTAC AACTAAGGAA ACTTGTACAA 182857 .......... .......... .......... .......... .......... .......... 889 ATAAATGAAA ACTAGAGGAA ATTTAATCAC CTAAATGGGT TATCATTATT TGGGAAATAC 182797 .......... .......... .......... .......... .......... .......... 889 CAACAGAAAG AAACTGACTT CCTACTTGAC ATGAGGTATC AAAATTAGTG ATTCACAAAA 182737 .......... .......... .......... .......... .......... .......... 889 TTACGAGCAC AAATAAATAA AGATGTAAAT TCAAAAATAG CATGCTCAGC CACTATCCGA 182677 .......... .......... .......... .......... .......... .......... 889 ACAAGGATAA AAATCTCACA AAACTAAACA TGAACTTTAA ACTGAAATTA TCTCAATATT 182617 .......... .......... .......... .......... .......... .......... 889 GACATTAGCG ACAGATACAT TGAAAACCAC AAAATAAAAG ATAGAGAATG TCATCTTTAA 182557 .......... .......... .......... .......... .......... .......... 889 GTTGATTAAA CACGGACTTA AAGATCAATT TAGATGAGAT AGAAAACCAA GCCTATCTTT 182497 .......... .......... .......... .......... .......... .......... 889 GATCAAGCTG ACTAATCTAG GAAGTAAAAC AACCAAGTAA TGATGCAACA TCATGACATG 182437 .......... .......... .......... .......... .......... .......... 889 AAACCAAGTT CTAATCCATT TGAAAATGAT CTCTAGGAGA AAATGAAATG TCATAGCTTG 182377 .......... .......... .......... .......... .......... .......... 889 TATTTCTAAA ACATAGAGAA TTATATAAAT TGTCGGGTAC ACAACATTCA TTACATGCAT 182317 .......... .......... .......... .......... .......... .......... 889 GGTTCACAAA AATAGTAAAA AGAAAAGATT GAACTATAGT ATAGGAGAGC ACCTAGTGAA 182257 .......... .......... .......... .......... .......... .......... 889 ACTAGATTGT GATGAAGACT GGAGGAGATG CAATGATCTG CTTAGCTTTG CGAGTGAATG 182197 .......... .......... .......... .......... .......... .......... 889 ACAAGCATAG TGAGTGACAG AATGAAGATA CCCGCACGAA AAAACAAGAA AATAATCTTA 182137 .......... .......... .......... .......... .......... .......... 889 GTTTGTCATA TGCTATAGAA TTCCAAATAG AACAAGAACA GAATCAGTAA TCAATCAAGA 182077 .......... .......... .......... .......... .......... .......... 889 TTTTCCTCAA TAGAAGACAG GTTGGAAAAG TTCTCTATTA AGAATCAAAA TCTCAATAAA 182017 .......... .......... .......... .......... .......... .......... 889 CAATTTTATA TAAGTGTATA AATCATGTTG AATCAGTGTA TTGAAAAACT AGTATAAATC 181957 .......... .......... .......... .......... .......... .......... 889 ATGTTAAATC GATGTATTGA AAAACTAGAC CACTTGTTCC TACCATTCAA GTCTTTTATT 181897 .......... .......... .......... .......... .......... .......... 889 GCATTTTGCA CCTCCTGCAC AAGCATTCCA AAAGAAAGGA TAAAAAGGTT GACATGGTTC 181837 .......... .......... .......... .......... .......... .......... 889 ATAGAAAAGC ACAAGATAGG CACTACTAAT TTTTTCTTTT CCTATATTGG ATGGAATGCA 181777 .......... .......... .......... .......... .......... .......... 889 CACGAGAAGA AGTTTTACAT CAGAAAGTTG ATCAAAGACA TCTTAGTACC TGCTCATTAC 181717 .......... .......... .......... .......... .......... .......... 889 GGAAGGAAAC AAATCCAAAT CTTCTTGAAC AAACTAATTT TTGATACCAC ACAACGTTAT 181657 .......... .......... .......... .......... .......... .......... 889 TAAGTTTCTT TCAAACTTCT ATATTCAATT TGAGATGCAA CAAATCTCAG CTACTGGAAC 181597 .......... .......... .......... .......... .......... .......... 889 ACACACCTTA AAGAACAATA GTAAATAGTG AACCTTGAGG ATATACTTTT ACTAACTACT 181537 .......... .......... .......... .......... .......... .......... 889 TGCACAATTT GCTGGTACAA AAGACACAAA CAATGTAACG CAGAAATTGT TGCATAAGAA 181477 |||| | || | | .......... .......... .......... .......... ...GAATT-A TACAATTGCA 905 ACGGAATAG 181468 || ||||| GCGAAATAG 914 hqPGS_C01HBa0216G16.1-_SGN-U315404- (190281 189735) ******************************************************************************** EST sequence 34 +strand 888 n (File: SGN-U315286+) 1 TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 61 GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 121 TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 181 AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT CTTCTTGTTA TTTGTGGAGT 241 GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA AGCCAGTCTT CGTCACACCG 301 GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTCCTTC ATGTCTTGAT 361 GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT TTTAGCTTCT TAGAAACTCT 421 TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA CTTCCAGGTT TTGGGAATAA 481 TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG TTTAAGTCTT CCGCATTACT 541 TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG TTGGTTCGCT CACATAGGAG 601 GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT GACAAAACTT GGTATCAGAG 661 CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG TAGAGTCTTA AGGAACGGTA 721 GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT TAGGAAAACT TCACTCTTTC 781 ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC TAAGCGATAC GAATTGGTAT 841 CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA GCAACGAC Predicted gene structure (within gDNA segment 194320 to 186195): Exon 1 192369 191719 ( 651 n); cDNA 1 652 ( 652 n); score: 0.793 MATCH C01HBa0216G16.1- SGN-U315286+ 0.793 651 0.733 C PGS_C01HBa0216G16.1-_SGN-U315286+ (192369 191719) Alignment (genomic DNA sequence = upper lines): TAATGAACCT GTTTCCCAAA TGGGTATGGT GTGGAGGCTT GAGTCCTCAT GGATGTGCTT 192310 |||||||| |||||||| || ||||| | | ||||| | |||||||||| ||||||||| TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 60 GG-GTTGTGC CCAATGGCCA TGGTACTTGT TGTTGACACC TGTTAAGTGT TATGTTTGAT 192251 || ||||| |||| || | ||||| | | || | ||||||| | | ||||| GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 120 TTTATGTTAT TATTCGATAT ATATTGTTTT CTATTTTGAG TTGGCCGATG ATATCTACTC 192191 |||||| ||| | | ||| ||| |||| |||||||||| |||||||||| |||||||||| TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 180 AGTACTCGTG TTTTGTACTG ACCCCTACTT GTATG-TTTT CTTTTTGTTA ATTGTGGAGT 192132 |||| |||| |||||||||| |||||||||| |||| |||| ||| |||||| ||||||||| AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT CTTCTTGTTA TTTGTGGAGT 240 GCAGCAAACG TAGCGTCGTC TTCAACTCAA CCGCAACTCT AGCCAGTCTT CGTCACGTCA 192072 |||||||||| | |||| || ||| |||||| | | ||||| |||||||||| |||||| | GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA AGCCAGTCTT CGTCACACCG 300 GAT-TTCAGG GTGAGCTATT GTTTCTAGCT TGGACTGGGT CTTGTTCTTC ACGTCTTGAT 192013 ||| |||||| |||||||| | |||||||| |||||||| | ||| | |||| | |||||||| GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTCCTTC ATGTCTTGAT 360 GCCTTGAAGT TCTGGCATGG ACTATCTGTT TA-GT--TAT TTTAGCTTCT TAGATACTCT 191956 |||||||| | || ||||||| |||| || | || || | | |||||||||| |||| ||||| GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT TTTAGCTTCT TAGAAACTCT 420 AAGACTTAGT AATTTGAGGA TAGATGTTCT TGTGATGGTG ACTTCCAGAT TTTGGGGATA 191896 ||| ||||| | ||| | | |||||||||| ||||||| || |||||||| | ||| |||| | TAGAATTAGT AGTTTAAAG- TAGATGTTCT TGTGATGATG ACTTCCAGGT TTT-GGGA-A 477 GTAATTGATA AATTTTAGAA GTTAGTTATT GGTTATATTA ATGAGTTTTA AGTCTTCCGC 191836 |||| ||| | || | | |||||||| | || ||||| ||||| |||| |||||||||| -TAATAGATG TTTAATAATA G-TAGTTATT GATTTTATTA ATGAG-TTTA AGTCTTCCGC 534 ATTATTTTCT GTT--TATTA TGATTGAATT GTTGGGGTTT AAATCGATTG GTTCGCTCAC 191778 |||| ||||| ||| ||||| |||||| | ||| ||||| | || | ||| |||||||||| ATTACTTTCT GTTGCTATTA -CATTGAAAT GTTAAGGTTT AGATTGGTTG GTTCGCTCAC 593 ATAGGAGGTT AAGTGTGGGT GCCACTCGTG GCTC-GTTTT GGGTCGTGAC AGTCAAATGG 191719 |||||||| | |||||||||| |||| | | | || | | ||| |||||||||| | | ||| ATAGGAGGGT AAGTGTGGGT GCCAGTGGCG GCCCGGATTT GGGTCGTGAC A-AAACTTGG 652 hqPGS_C01HBa0216G16.1-_SGN-U315286+ (192369 191719) ******************************************************************************** EST sequence 33 +strand 1660 n (File: SGN-U315285+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CATAGATTAG GGGATCGGGT 421 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 481 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CAGGTGTCAC GAACCGACAC 541 GTAGATTTAG GGGATCGGAG TGTCACGTTC CGACATATAG ATTTAGGGGA TCGGAGTGTC 601 ACGTACCGAC ACAAGAGGAT TAATGAATAT TGAGGGAGCG GAGTGTCACG TACCGACACA 661 AGAGAAATAA AGATAATGAA TCTTGAAAGA TGTTAATATA CTCAATCTAA TGAACATGAT 721 TCCCAAATGA GTATGGTATT GAGGCTTGAG TCCTCATGTG TGAACTTGAC GGTAATTGTT 781 AATGATATAG TATTTGTTGT TGCTACATGT TGAGTATCAT AGTTGATTTT ATGATATTAC 841 TTGGTATATA TATTGATTTC TATTTTGAGT TGGCCGATGA TATCTACTCA GTACCCGTGT 901 TTTGTACTGA CCCCTACTTT TATGTTCTCT TCTTGTTTAT TTGTGGAGTG CAGCAAACGT 961 GCCATCGTCC TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA AATTCAGGGT 1021 GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTCGATGC CTTGAACTTC 1081 CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAA TACTCATAGT TTAGTCATTT 1141 GATCGTAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGAATAATAG ATGTTGAATT 1201 TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT TACTTTCTGT 1261 TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG GAGGGTAAGT 1321 GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA GCATTAGGTT 1381 CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT AGGGGGATGC 1441 CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT CTTCTTTCGT 1501 GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA CCATCTTCAC 1561 TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC ACCAGCACCG 1621 GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 196226 to 186518): Exon 1 192645 191728 ( 918 n); cDNA 419 1356 ( 938 n); score: 0.756 MATCH C01HBa0216G16.1- SGN-U315285+ 0.756 918 0.553 C PGS_C01HBa0216G16.1-_SGN-U315285+ (192645 191728) Alignment (genomic DNA sequence = upper lines): GTTTGATGAA CTAAAAGAAT GAGGTTAGGG GATCGGGTGT CACGAACCGA CACGTAGTAA 192586 || | | ||| | | | || |||||| |||||||||| |||||||||| ||||||| GTGTCACGAA CCGACACGTA GA-TTTAGGG GATCGGGTGT CACGAACCGA CACGTAGATT 477 TAATGGATTG GGTGTCACGA ACCGACACGC AGTATTAATG GATCGGGTGT CACGAACCGA 192526 || |||| | |||||||||| ||||||||| || ||| | |||| ||||| |||||||||| TAGGGGATCG GGTGTCACGA ACCGACACGT AGATTTAGGG GATCAGGTGT CACGAACCGA 537 CACGTAGTAT TAGGGGATCG G-GTGTCACA AACCGACACG TAGTATTAAT GGATCGG-GT 192468 ||||||| | |||||||||| | ||||||| |||||| ||| ||| ||||||| || CACGTAGATT TAGGGGATCG GAGTGTCACG TTCCGACATA TAGATTTAGG GGATCGGAGT 597 GTCACGAACC GACAC----- G--T-A-G-- TATTAGGGGA TTGGAGTGTC ACGTTCCAAC 192419 |||||| ||| ||||| | | | | |||| |||| |||||||| |||| || || GTCACGTACC GACACAAGAG GATTAATGAA TATTGAGGGA GCGGAGTGTC ACGTACCGAC 657 ACCAGGATAG TAAAAAGAAT GAAT-TTGAA TTATGTTACT GTACTCAATT TAATGAACCT 192360 || || | |||| | ||| |||| ||||| |||||| | |||||||| |||||||| | ACAAGAGAAA TAAAGATAAT GAATCTTGAA AGATGTTAAT ATACTCAATC TAATGAACAT 717 GTTTCCCAAA TGGGTATGGT GTGGAGGCTT GAGTCCTCAT GGATGTGCTT G--GGTTGTG 192302 | |||||||| || ||||||| | ||||||| |||||||||| | || ||| | ||| | GATTCCCAAA TGAGTATGGT ATTGAGGCTT GAGTCCTCAT GTGTGAACTT GACGGTAATT 777 CCCAATGGCC ATGGTACTTG TTGTTGACAC CTGTTAAGTG TTATGTTTGA TTTTATGTTA 192242 ||| | || ||| ||| |||||| || |||| ||| | || |||| ||||||| || GTTAAT-GAT ATAGTATTTG TTGTTGCTAC ATGTTGAGTA TCATAGTTGA TTTTATGATA 836 TTA-TTCG-A TATATATTGT TTTCTATTTT GAGTTGGCCG ATGATATCTA CTCAGTACTC 192184 ||| || | | ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TTACTTGGTA TATATATTGA TTTCTATTTT GAGTTGGCCG ATGATATCTA CTCAGTACCC 896 GTGTTTTGTA CTGACCCCTA CTTGTATGTT TTCTTTTTG- TTAATTGTGG AGTGCAGCAA 192125 |||||||||| |||||||||| ||| |||||| |||| ||| ||| |||||| |||||||||| GTGTTTTGTA CTGACCCCTA CTTTTATGTT CTCTTCTTGT TTATTTGTGG AGTGCAGCAA 956 ACGTAGCGTC GTCTTCAACT CAACCGCAAC TCTAGCCAGT CTTCGTCACG TCAG-ATTTC 192066 |||| | || ||| |||||| |||| | || || ||||||| ||| | || || | | ||| ACGTGCCATC GTCCTCAACT CAACAGTAAT TCAAGCCAGT CTTACT-ACA TCGGAAATTC 1015 AGGGTGAGCT ATTGTTTCTA GCTTGGACTG GGTCTTGTTC TTCACGTCTT GATGCCTTGA 192006 |||||||||| | || ||||| |||||||||| | |||| ||| |||| |||| |||||||||| AGGGTGAGCT AATGCTTCTA GCTTGGACTG GATCTTCTTC TTCAAGTCTC GATGCCTTGA 1075 AGTTCTGGCA TGGACTATCT GTTTA-GTTA TTTTAGCTTC TTAG-ATACT CTAAGACTTA 191948 | ||| |||| ||||||| || ||| || ||||||||| |||| ||||| | || ||| ACTTCCGGCA TGGACTAGCT TCTTATGTAT TTTTAGCTT- TTAGAATACT CATAG-TTTA 1133 GTAATTTGAG GATAGATGTT CTTGTGATGG TGACTTCCAG ATTTTGGGG- ATAGTAATTG 191889 || |||||| |||||||| ||||||||| |||||||||| ||||||||| ||| || || GTCATTTGAT CGTAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA ATAATAGATG 1193 ATAAATTTTA GAAGTTAGT- TATTGGT-TA TA-TTAATGA GTTTTAAGTC TTCCGCATTA 191832 | ||||||| ||||||| | |||||| | || ||||||| | |||||||| |||| ||||| TTGAATTTTA GAAGTTAATG AATTGGTCTG TATTTAATGA G-TTTAAGTC TTCCACATTA 1252 TTTTCTGTT- -TATTATGAT TGAATTGTTG GGGTTTAAAT CGATTGGTTC GCTCACATAG 191774 |||||||| |||||| || |||| |||| || ||| || | ||||||| |||||||||| CTTTCTGTTG ATATTAT-AT TGAAATGTTA AGG-TTAGAT TGGTTGGTTC GCTCACATAG 1310 GAGGTTAAGT GTGGGTGCCA CTCGTGGCTC GTTTTGGGTC GTGACA 191728 |||| ||||| |||||||||| ||| | | | ||| |||| |||||| GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACA 1356 hqPGS_C01HBa0216G16.1-_SGN-U315285+ (192645 191728) ******************************************************************************** EST sequence 31 +strand 1101 n (File: SGN-U315280+) 1 CCCAAACCAA CCAGCAGCTC ATCACAAACA AACTCCGTCA TTGTCTCTCC GTTTCCCTCC 61 AAACAACAAC CAAATAACAA CCAAACAGCC ACCAGAATAC AACCCAATCC AGCCAAACAC 121 ACTCCGAAAT CATCAGGAAA ATAGAACTAA AAACCCACCA GATCTCCTCT TAAATCACCA 181 CCTCTGCTCA CCCTTTAAGC TTTACTCGAG TTATTCCATT AATGGTGAAC TCCGAGCTCC 241 CATCGTCCCA TTTTCCCCTC TCACCCGCTA CAAACAATGG CAACCCTCAA TTCCATGCGA 301 ATCAGAACCA CCACCATTTC CGACGAACGG AGAAACGACN ACAACCACCT CTAAAACCCA 361 ATGTTTTCGT ATTCGATGCA ACCAGTAGCT CCGGCGAGGA GCTCAAAGCT CCGATGTACC 421 GGAGCTAAAT AACACTAGAC CTCTTTCCCT CTTCCCCTTA ACGTTTTTTT GACAGGTGAA 481 CTACAATCAG CGAGTTTGTG AACAAACAAC GGCNACAACT AGAAGTTCTA AGGATCAACG 541 ACNACCAGCT ACAAGCTCCA GCGAAGAATA AAAATGACCA CATCCAGTCC TAATACTCCN 601 TTGAAGTGAG ATTTCACCGG AAAGATTAGA CTTCGGCCAA ACATCATTTA AAATGGCAAA 661 CGTACCGTCG TCTTCAACTC AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG 721 GGTGAGCTAA CGCTTCTAGC TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG 781 TTCCGGCATG GACTAGCTGT TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA 841 TTTGAAGTAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG 901 AGTTTTTAGA AAAAAAAAAT TGATTTTCAT TAATGAGTTT AAGTCTTCCG CATTATATTC 961 CGTCATTATA TTGAAATGTT GGATTTTGTA TTGGTTGGTT CGCTCACATA GGAGGGTAAG 1021 TGTGGGTGCC ACTTGCGGCT CGATTTGGGT CGTGACATTA AAGATTATCG AATTCATAAT 1081 ATAATTGTAA GAAAAAAAAA A Predicted gene structure (within gDNA segment 196870 to 190462): Exon 1 192127 191728 ( 400 n); cDNA 657 1057 ( 401 n); score: 0.846 PPA cDNA 1089 1101 MATCH C01HBa0216G16.1- SGN-U315280+ 0.846 400 0.363 C PGS_C01HBa0216G16.1-_SGN-U315280+ (192127 191728) Alignment (genomic DNA sequence = upper lines): CAAACGTAGC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCGTC ACGTCAGATT 192068 |||||||| | |||||||||| |||||||||| |||||||||| ||||||| | || || |||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 716 TCAGGGTGAG CTATTGTTTC TAGCTTGGAC TGGGTCTTGT TCTTCACGTC TTGATGCCTT 192008 |||||||||| ||| | ||| |||||||||| ||| |||| | |||||| ||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 776 GAAGTTCTGG CATGGACTAT CTGTTTAGTT ATTTTAGCTT CTTAGATACT CTAAGACTTA 191948 ||||||| || ||||||||| ||||||| | |||||||||| |||||||||| || ||| ||| GAAGTTCCGG CATGGACTAG CTGTTTATGT ATTTTAGCTT CTTAGATACT CTTAGATTTA 836 GTAATTTGAG GATAGATGTT CTTGTGATGG TGACTTCCAG ATTTTGGGGA TAGT-A-A-T 191891 ||||||||| | |||||||| ||||||||| |||||||||| |||||||||| || | | | | GTAATTTGAA G-TAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA TAATAATAGT 895 TGAT-AAATT TTAGAAGTTA GTTATTGGTT AT-ATTAATG AGTTTTAAGT CTTCCGCATT 191833 || | | || |||||| | |||| || | ||||||| || ||||||| |||||||||| TGTTGAGTTT TTAGAAAAAA AAAATTGATT TTCATTAATG AG-TTTAAGT CTTCCGCATT 954 ATTTTCTGTT TATTATGATT GAATTGTTGG GGTTTAAATC GATTGGTTCG CTCACATAGG 191773 || ||| | | ||||| ||| ||| |||||| ||| || | |||||||| |||||||||| ATATTCCG-T CATTAT-ATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG 1012 AGGTTAAGTG TGGGTGCCAC TCGTGGCTCG TTTTGGGTCG TGACA 191728 ||| |||||| |||||||||| | | |||||| ||||||||| ||||| AGGGTAAGTG TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACA 1057 hqPGS_C01HBa0216G16.1-_SGN-U315280+ (192127 191728) ******************************************************************************** EST sequence 27 +strand 1490 n (File: SGN-U335075+) 1 NGCCATGGGG NNGGGCAGAG ATGTATGACT CCTATGGGCG AATGGCGGCA AATCGGCCGA 61 ATTGATCGTC CCTCTCTCTC TGTCATCGTC CCTCTCTCTC TCATCATTCC TCTCTACCAG 121 CATTCTCCAT CTCCTCTCTC CGCCGTCATC TTCTTCATCT TCATCTCCGC CGTCGTCTTC 181 TCCATTCTCC ATCTCCTCCG TCGTCTTCTC CATTCTCCAT CTCCTCTCTT CGCCGCCAGC 241 TCCATCTCTG CGCGCCATTT GCAGTCGGGC CTCAGCAGGT GGAGGTCGCG CCGCCTCCAT 301 CTCCGCCGAG TCGTGCAGCA GCAACAGTGG TCGACGTTCC CAACCCTTTG ACTCCAGCAA 361 ACGTGCCGTC ATCTTCAACT CAACCGCAAC TCTAGCCAGT CTTCATTACA CCAGATTTCA 421 GGGTGAGCTA ATGCTTCTAG CTTGGACTGG ATCTTCCTCT TCATGTCTTG ATGCCTTGAA 481 CTTCCGGCAT GGACTAGCTT TTTACTTATT CTAGATTCTT AGATACTCTT AGCTTATTTG 541 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG AATAATGATA AGTTTGAGTT 601 TTAGAAGTTG ATTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAACGNNCAA 661 AGGGGGCCCC TGGGAAAATT TGAAGGACCC CCAAAAAAAG CGGGGAAAAG GGGGGAAAAA 721 GGGGGCCCAA GGGGAAAATG GGGACACAAA AAAAAACCAA AAAANNNNNN NNNNNCNACA 781 AANNNTCCGG GGGGAAAANN ATTTCAACAA AAAAAANNNN NGNCCCCNAA TACCCCCAAA 841 AAAATAATAG CNCNANACAT CGTAANTTGA TTAAAGAAGG ACAATAATAC TCTATTACAT 901 TTAAATACAA CCTGAATAAG CACCACATAA AGAATATTAC AACCAATATT GTCATTCACC 961 ACCCTAATAA AGTATAAAGA AAACCGTAAA ATAAACATGA CAATTCAAAA GACGATCAAA 1021 AGTGCAAAAC CCAGAAATAT AGAGCGGAAA TCAATCGATT ATCTAGACAT ATACCTAACA 1081 CATAATGACA TGCCATTACA ACCTTTCTAC TATTAAAGTA ATACATACAC TACCAACGTC 1141 ATCCTAAAAG ATATAATTAA GATATTTAGA ACATATATTA GCGCAGCATA TATTATAATA 1201 AAAAGTACAA CGATAGCGAG TAAAAAGATA AAAATCTAAT CATTTACCAT CGGCAGCAGA 1261 CACGCCAATA AATAGATGAC ATACATATTT TATTAGGATA AAACTGTCCG TACTATAACG 1321 TACGAATATA CACATTAAAT TAAGTCACCT GAGGAACACT GTCAAACTAC GTGATATACC 1381 GATCCGAATC TCTAATATAT ACCATATGAA ACACATATAC ACGTAGTAAN ATAATATATA 1441 CTACTCAATA ATTAGCAACG AACACCCGAC TACTCTATTA TATATAATAA Predicted gene structure (within gDNA segment 196423 to 182190): Exon 1 192130 191876 ( 255 n); cDNA 355 606 ( 252 n); score: 0.847 Intron 1 191875 191205 ( 671 n); Pd: 0.487 (s: 0.73), Pa: 0.890 (s: 0) Exon 2 191204 191200 ( 5 n); cDNA 607 611 ( 5 n); score: 1.000 Intron 2 191199 190368 ( 832 n); Pd: 0.000 (s: 0), Pa: 0.722 (s: 0.56) Exon 3 190367 190316 ( 52 n); cDNA 612 663 ( 52 n); score: 0.558 Intron 3 190315 186038 (4278 n); Pd: 0.985 (s: 0.58), Pa: 0.000 (s: 0) Exon 4 186037 186022 ( 16 n); cDNA 664 679 ( 16 n); score: 0.562 Intron 4 186021 185329 ( 693 n); Pd: 0.771 (s: 0), Pa: 0.315 (s: 0) Exon 5 185328 185312 ( 17 n); cDNA 680 696 ( 17 n); score: 0.824 Intron 5 185311 183723 (1589 n); Pd: 0.690 (s: 0), Pa: 0.870 (s: 0) Exon 6 183722 183708 ( 15 n); cDNA 697 711 ( 15 n); score: 0.733 Intron 6 183707 183578 ( 130 n); Pd: 0.000 (s: 0), Pa: 0.715 (s: 0) Exon 7 183577 183570 ( 8 n); cDNA 712 719 ( 8 n); score: 0.625 MATCH C01HBa0216G16.1- SGN-U335075+ 0.798 368 0.247 C PGS_C01HBa0216G16.1-_SGN-U335075+ (192130 191876,191204 191200,190367 190316,186037 186022,185328 185312,183722 183708,183577 183570) Alignment (genomic DNA sequence = upper lines): CAGCAAACGT AGCGTCGTCT TCAACTCAAC CGCAACTCTA GCCAGTCTTC GTCACGTCAG 192071 |||||||||| |||| ||| |||||||||| |||||||||| |||||||||| | || ||| CAGCAAACGT GCCGTCATCT TCAACTCAAC CGCAACTCTA GCCAGTCTTC ATTACACCAG 414 ATTTCAGGGT GAGCTATTGT TTCTAGCTTG GACTGGGTCT TGTTCTTCAC GTCTTGATGC 192011 |||||||||| |||||| || |||||||||| |||||| ||| | |||||| |||||||||| ATTTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCCTCTTCAT GTCTTGATGC 474 CTTGAAGTTC TGGCATGGAC TATCTGTTTA GTTATTTTAG CTTCTTAGAT ACTCTAAGAC 191951 |||||| ||| ||||||||| || || |||| ||||| ||| ||||||||| ||||| || | CTTGAACTTC CGGCATGGAC TAGCTTTTTA CTTATTCTAG ATTCTTAGAT ACTCTTAG-C 533 TTAGTAATTT GAGGATAGAT GTTCTTGTGA TGGTGACTTC CAGATTTTGG GGATAGTAAT 191891 | | |||| |||||||||| |||||||||| || ||||||| |||||||||| | ||| | || -T--T-ATTT GAGGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GAATAATGAT 589 -TG-ATAAAT TTTAGAAGTT AGTTATTGGT TATATTAATG AGTTTTAAGT CTTCCGCATT 191833 | | | | ||||||| AAGTTTGAGT TTTAGAA... .......... .......... .......... .......... 606 ATTTTCTGTT TATTATGATT GAATTGTTGG GGTTTAAATC GATTGGTTCG CTCACATAGG 191773 .......... .......... .......... .......... .......... .......... 606 AGGTTAAGTG TGGGTGCCAC TCGTGGCTCG TTTTGGGTCG TGACAGTCAA ATGGAAAAGT 191713 .......... .......... .......... .......... .......... .......... 606 AGGCCCTACA TGCCAGTTAT ATGTTTTGTT TGATAATTTT TAAAAAAAAG TATTTCTTGC 191653 .......... .......... .......... .......... .......... .......... 606 TTCATCCCTA AAATTTATAC TACATTCAAA ATTGACCTTT TTTTTACCAA CTACATAACA 191593 .......... .......... .......... .......... .......... .......... 606 GCCATAAAAT ATGAATAATT TAGGTAAATT AGAGCAATGC GCTTTTGATG TATGAGCCCC 191533 .......... .......... .......... .......... .......... .......... 606 TTCTGTTATT TTTGTGTCTA TTGTTTAATA GTTTTAGAAT ATGTTCAAAT TGATTTAGTT 191473 .......... .......... .......... .......... .......... .......... 606 TAAGTCTTTT TAAGTTAAAA TAATGGTTTA GTATTTTTTT TTAAGGAATT TGAGTAAATT 191413 .......... .......... .......... .......... .......... .......... 606 TAAAATTATT TATAATTAAT GCATTGAATT TTAAGCTAAA ATTTCTTCAT TATTTTCTTC 191353 .......... .......... .......... .......... .......... .......... 606 TTTCTTTACT TGTGTTGAGG ATTTTTGGAA ACATCATCTT TATTTTCATG AGATAATGAT 191293 .......... .......... .......... .......... .......... .......... 606 AATGTCTACA TATACTTTAC TATCCTCAGA TTCCACCTAC TAGAATTTTA GTGAATGTGT 191233 .......... .......... .......... .......... .......... .......... 606 TTGTTATTTT TAAATATCAA CTAAAAAGGT TGAAGTCATG AGAAAATGTG GAAAGAATAT 191173 || ||| .......... .......... ........GT TGA....... .......... .......... 611 AGCTAGGGGA ATGCAAATAA CATAACATGA TTTTTCTTGC ATGATCCATG TGTATTGGTA 191113 .......... .......... .......... .......... .......... .......... 611 GCTCCCTTTA TCGTAGGGAA GAAAAAATGT GTGAGACAAA TCTGCAAAAA TCAATGAAGA 191053 .......... .......... .......... .......... .......... .......... 611 CTCTAATTTT GTCCCGCAAA GTAATATTTT ATTTTCAGCC CGCTCTTAAT GCATAATTTT 190993 .......... .......... .......... .......... .......... .......... 611 TTAACAAATC TGTATTTTAC AGAATTTAAT AACAACTAAC TCAAATAATT ATCTTAATCA 190933 .......... .......... .......... .......... .......... .......... 611 ATCTCATACA TAATGTTAGT TTTTTTCACT ATATTTTATT ATTTTACTTT GTTTTGTTTT 190873 .......... .......... .......... .......... .......... .......... 611 ATAACAGTAA TATCTTTTCA TATTTTTGTG ACTTTTCAAT ATATTTGTAA TATATATTAT 190813 .......... .......... .......... .......... .......... .......... 611 CTACTAATTT CTCTTTTAAA AAATAAAATG AAGATTTTTT CTTGTATATA AGGGATACTA 190753 .......... .......... .......... .......... .......... .......... 611 AGTGTTCCAA CTATTATAAT GTTGAATATT ATAATTTGTC TCACTGTTAA ATTCGTCTAT 190693 .......... .......... .......... .......... .......... .......... 611 TCAATACAAA CATAATGTTA AGCTAGAATT TTCATATTAT GGCTTATAAA TTTATTTTTA 190633 .......... .......... .......... .......... .......... .......... 611 TAATTTTAGC TTATAATTCA ACGCTTTAGT TATAAATAAT TTTAAATTTA CTCAAATTCC 190573 .......... .......... .......... .......... .......... .......... 611 TAAAAACATT ATTTTATCTT AAAAATACTT CACTAAATCA ATCTAAATAT ATTCTAAAAC 190513 .......... .......... .......... .......... .......... .......... 611 TATTAAGCAA TAGACACAAA AATAACAGAA GGGGCTCAAA CATGAAAGCA CATTGCTCTA 190453 .......... .......... .......... .......... .......... .......... 611 ATTTATCAAA ATCATCAATA TTTTGTAAGT GTGATGTAGT TGGTAAAAAA AGAAAGATTA 190393 .......... .......... .......... .......... .......... .......... 611 ATTTTGAATG TATCATATAT TTTAGGGATG AAGAAAGAAA TAATATTTTA AAAAGTATCA 190333 | || ||| ||| || | | |||| | | .......... .......... .....TTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 646 AACAAAACAT ATAAGTGGCA TGTAGGGCCT ACTTTTTCAT TTGACAATTT ATTAAGGGAA 190273 || ||||| || | AAAAAAACGN NCAAAGG... .......... .......... .......... .......... 663 AATTATATAT AATAGCAAAC TAACAGCCTA AATTAAATGG AATAGCTAGG GTTTGATTTA 190213 .......... .......... .......... .......... .......... .......... 663 ATTGTGCTCC ATAGCAAACA TTAGTTAAAA TTTGTCAGCG TCTCTCTCTC AAAAATCTCG 190153 .......... .......... .......... .......... .......... .......... 663 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAGAAGTG TATAATTCTG 190093 .......... .......... .......... .......... .......... .......... 663 TTTCTGTTTT ATATAAAGCG AGAGAAAATT GTATATACAC ATGCAAAAAT GTATATCTTC 190033 .......... .......... .......... .......... .......... .......... 663 GTGTTATACA CTTAATTATA CAATTTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA 189973 .......... .......... .......... .......... .......... .......... 663 GGCCAACGAA TTATACAATT GTGAATTATA CAATTGTAGT GAAATACAAT TTTCTCTAGC 189913 .......... .......... .......... .......... .......... .......... 663 TTTATACAAC AGAAGTGTAT ATATTGTGTT TCTGTTTTTG TGTAAAGCGA GAAAAACATA 189853 .......... .......... .......... .......... .......... .......... 663 TATCTTCTTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT CGATTCAACT 189793 .......... .......... .......... .......... .......... .......... 663 GTATGCAAAA CAAATTATAC AATTGCGGCG AAATAGGCCA GCGAATTATA CAATTTAGGC 189733 .......... .......... .......... .......... .......... .......... 663 CAGCGAATTA TACAATTTAG GCCAACGAAT TATACAATTA TATATGTATA GCAAATTATA 189673 .......... .......... .......... .......... .......... .......... 663 CAATTTTATG TTTGCTATGG AGCGCAATTA TACAAAGTTT GCTATAGCAT AAAAATATAA 189613 .......... .......... .......... .......... .......... .......... 663 ATTTTTTATT TGCTATACGT AAAAGTTGCC CATTTATTAA TGGCACCCAT ATAACTACTG 189553 .......... .......... .......... .......... .......... .......... 663 TCCCCTAGAT TCACGAAAAT CTTGTGACAA AATAAAAAGT AAATGACACA AAGAAAGAAA 189493 .......... .......... .......... .......... .......... .......... 663 GAAATTTGAC ACAAGCAATG ATTAAAAGAA CAGACACAAA TCTTAAATAA AAATAAAAAA 189433 .......... .......... .......... .......... .......... .......... 663 ACTTCATAAT CACTGATACA TGTATCTTTC GTGTAAGTTA GTTATGATCG TATTTTGTAC 189373 .......... .......... .......... .......... .......... .......... 663 TTTTTGTGTT TTGGTGTCTT AAATGCATGA TATTTTCTAA TGGAGATTAA TTAAAATATT 189313 .......... .......... .......... .......... .......... .......... 663 ATATATCAAA ATTTTTTCTA TTATGAATCG AACTCAAGAT CTTTAGTTAA AAAGAATAAT 189253 .......... .......... .......... .......... .......... .......... 663 TGCATCGTAT ACATCATATT TTCTTACTTA ACACTATTAA TTATGCTTTA CTGTTGTATT 189193 .......... .......... .......... .......... .......... .......... 663 AATCAATTTA ATCTTAACAG TTGTGTGTAT ATCTAGTTTT CACACTAAAT AAATTTGATA 189133 .......... .......... .......... .......... .......... .......... 663 TAAATAACTA GAGGGATAAT ATTTACTGAT TTTGGATATA AATATAAAAA AAAATAACTT 189073 .......... .......... .......... .......... .......... .......... 663 TTTTTCGTAC CAAATACATC CTAAATGATA AAATATAAAT TTTTAAATTT CCATGAGCTT 189013 .......... .......... .......... .......... .......... .......... 663 TTTTTTATTT CTCTAATATG CATTACTATT TCAAGATTAG TCACTAATTC ATAACAATAT 188953 .......... .......... .......... .......... .......... .......... 663 CGTGGTTTAG AAAATAAGAG AGATAATTCA TAATTAACTA AACAAAAAAT CTTAAGCATT 188893 .......... .......... .......... .......... .......... .......... 663 TTAAGATTTC TCTCGAATGA GTAAATCGTG ATTTGTTCAC ACAACAATAT TAAAACAACA 188833 .......... .......... .......... .......... .......... .......... 663 ATGTACTAAG ATTCTATTCA AGCAGAAAAC ATGTGATGTT TTCACACAAG ACAATATTCA 188773 .......... .......... .......... .......... .......... .......... 663 GACACAAGTA AAATTGAAAA TCTATAAAAA CAAGTAATAT GTGTTGTCAA ATTAATTTTA 188713 .......... .......... .......... .......... .......... .......... 663 ATATCATATT AATAATTACC ATAAATAAAA AATTATAATT TTATCTTAAA ATATATTTTA 188653 .......... .......... .......... .......... .......... .......... 663 CGAGAAAGGG AGTTATCACT TACTTGAGAT GACAAGCACT ATTATTGGTA AGCAAATCAA 188593 .......... .......... .......... .......... .......... .......... 663 TGTATATTGT TTAAATTTGA ATGGTATTAA ATTTTCATTG ATAATGTTGA ATAGAGCTTA 188533 .......... .......... .......... .......... .......... .......... 663 GGCTAAAAGT ATTGCTTCAA TTTTTTTTTT TTTATAATGT CATTCATTAA TCCATATTTT 188473 .......... .......... .......... .......... .......... .......... 663 ACTTTAAATA AAAATAAAAT ATGTACGTCT ATTAAACGGT AGATATTTAC TCAAAAAGTA 188413 .......... .......... .......... .......... .......... .......... 663 TACGTTGATA AAAAGTATCA TTTAATCGTG TTAGACCATA AATGTGTACG TAAAATATCA 188353 .......... .......... .......... .......... .......... .......... 663 ATGTTGCACT TAATTAATTT GGTGTAACTA CAAGAGGAAT ATAAGTATTT ATTGTTTTAA 188293 .......... .......... .......... .......... .......... .......... 663 TTACTTACTA GATTTTTCAC TTTAAGCTTT GTGTATTTAA TTTCATTAGG TTATATTATT 188233 .......... .......... .......... .......... .......... .......... 663 TCAGTGTTAC AGAGTTTTAT AAGAATAATA ATTTCTTCTC TTTTTTTTAG AATAATAATT 188173 .......... .......... .......... .......... .......... .......... 663 TCTTCTTTTT TTTATTATTT TTATAAGAAC AATAATGAAT TCATTATTGT TGTTAAATTC 188113 .......... .......... .......... .......... .......... .......... 663 TTATTCTTAT ATTTTTAAGG CCTTTGAAAA AAAAGTTTTA AAATGGCATC TTTGCCATTA 188053 .......... .......... .......... .......... .......... .......... 663 TGATATAAAA GTAATTTTAA TATTATAATA TAAATATTTT AGAGTTGTCA ATTTTAAAAT 187993 .......... .......... .......... .......... .......... .......... 663 TAAAATGCAA GCAAACATAG ATAATATGAT TTAGTATTTT CTTGAAATTA TTATCTTTTA 187933 .......... .......... .......... .......... .......... .......... 663 TTCTACAAAT AAAAATATAC CCTATTTATG TTAGATAAGA TTTAGTCCCT ATTTAAAATC 187873 .......... .......... .......... .......... .......... .......... 663 ACTAGTAATT TATATCATGT TTTGGTTGAA ATTGGAAAAA ATAATTATAC TTAAAAGTTA 187813 .......... .......... .......... .......... .......... .......... 663 GTATTACCAA CGTTTGGTTG TTAGTTTTTA TTTACAAGAT ATATAACAAT TTATAAGTTA 187753 .......... .......... .......... .......... .......... .......... 663 CCATATATCT ATGTATAATT TTACATACAG TAAAATGTGG AACAAATATA AAAATCTTAG 187693 .......... .......... .......... .......... .......... .......... 663 CAATACGTGA GCTTTTTTTT AAAATAATAC CCTAATAATA TTAAATAACT TTTTCATATT 187633 .......... .......... .......... .......... .......... .......... 663 TTATTAAAGG AACACACACA TCTTTAAATT GTACATTATA CTATTTTATA CTAAATTGAT 187573 .......... .......... .......... .......... .......... .......... 663 CATTTAATAA AAAATATCTT TGTAATACTA ATCAATGTAT TACTAATAGC TATTACAATT 187513 .......... .......... .......... .......... .......... .......... 663 TTCACGCTAC TAATCTTTCT CTAAAGTTAA ATGACTACAT TATACATAAT AAGTTGATAC 187453 .......... .......... .......... .......... .......... .......... 663 GAATAATTTT ATAATAAAAA AAATAAATCA AACTAAATAT GTATGCTTAG TGATTTATTT 187393 .......... .......... .......... .......... .......... .......... 663 ATGTCATTAT TGTTCTTTTT TTTTCCAGCT TCCAACAAAT AAATGATATA GTCAAAATCA 187333 .......... .......... .......... .......... .......... .......... 663 ACAATAATAT GTTTAGGTCC CATCAAATCA ACCTATAATG AATCAATATA ACATGTGTCC 187273 .......... .......... .......... .......... .......... .......... 663 TGCCTCAAGT ATATATTTAA TATATAATAA TAATCTGCCC TAACTAAATA TTGTATGTTT 187213 .......... .......... .......... .......... .......... .......... 663 TTAGTGATTT TATTTGTATC TTTTTTCTTC TTTATTTTTT CACCTTCCAA CAAACAAATG 187153 .......... .......... .......... .......... .......... .......... 663 AATATAGTCA AATTCAACAA TCACTTGTTC AAGTCTCAAC AAATCAATCT ATGATGAATC 187093 .......... .......... .......... .......... .......... .......... 663 AATATAAAAT GTATCATGCC CCAAGGTATT TATTTGAGAC ATAATAATAT ACCCTCAACT 187033 .......... .......... .......... .......... .......... .......... 663 TTTGTGACTA ATTAATGCAT ATTTCTAATT TAATTTTATT AATATATCAT TTTAAATTTA 186973 .......... .......... .......... .......... .......... .......... 663 TATTCTATAA AATATTTAAC TTTATGTCAA GCCCAAGTTG AATTCTTTTG TTGAACCCTC 186913 .......... .......... .......... .......... .......... .......... 663 ACTTAATATG AACCAGAATT TATCTCCAGA TGTATTTTAT TCTAGTGAAA TCTTATTATT 186853 .......... .......... .......... .......... .......... .......... 663 CTTTTATTTT TCAATTATCT AGATAAATGT AATTGAGAAA GACAATTAAG ATTTTTTTTT 186793 .......... .......... .......... .......... .......... .......... 663 TGAATTTATT AATTTTACAT ATAACTAAAT AAACAAATTT TAAAATTATT TATTTTAATT 186733 .......... .......... .......... .......... .......... .......... 663 AAAAATTCTA ATTCAACTTT AAAATTTCAC ATTTTAAAAT TGATCATTCA ACAATTCATC 186673 .......... .......... .......... .......... .......... .......... 663 AGTATAATCA CGCGAGCAAT CCATATCATC TTCAACATTC AACTTGATAT CTCATTCTCC 186613 .......... .......... .......... .......... .......... .......... 663 ATGATTGATC CATCTAGTAT AATCTTTAAC AAATCCATAG CATGTTAGAT GATCATACAC 186553 .......... .......... .......... .......... .......... .......... 663 TACATTCCTT CGAGTCCAAC GAATATTACA CCATTTTGCA CATGGACACT GAATTTCCTC 186493 .......... .......... .......... .......... .......... .......... 663 TCCATGAGGA TTTCCATAAG AATAAGCAAA ATCTTGGAAT AATTCCACAC CATCAATATA 186433 .......... .......... .......... .......... .......... .......... 663 GGGTTGGAGG AATGATTCCA CACCATCAAT ATAGGGTTGG CTATACCTTG CTAAATACAT 186373 .......... .......... .......... .......... .......... .......... 663 CCAATCCTTG GATGGATATT TGAATTCCTA TAAGAAGATA TAAATATTTG ATATTTCAAT 186313 .......... .......... .......... .......... .......... .......... 663 AAGAATCATC AAATTCATGA TTAAGTTACC AAAATCAGGT GTTATGAGAT GATAATATTT 186253 .......... .......... .......... .......... .......... .......... 663 TCTTACGTAG TCCTGACACT TGTGTTATGC CAAATCAAAC TTTGAATCCT CCACAAATGT 186193 .......... .......... .......... .......... .......... .......... 663 TTTTGAATGT TGATTTTTGT TATAAGGGAA AATAAGTAAA ATTAGTAGGA TAGAAAGAAT 186133 .......... .......... .......... .......... .......... .......... 663 TAAATAAGGC AGTGAATTAT AGGATAGACA AAATTTAATG AACTAATCAA GAATAAGGAA 186073 .......... .......... .......... .......... .......... .......... 663 ATTTTTCAAG AATCTTGAAG TGTTCAAAGC TTAACAGAAT CCTGTGATAA GGTCTACTGG 186013 | |||| || || .......... .......... .......... .....GGGCC CCTGGGAAAA T......... 679 AAACCTAATT TTAAAGAGTT CATTATATTT TACTTCAATT GTTATGTAGC CTTCCAAAAT 185953 .......... .......... .......... .......... .......... .......... 679 CTAAAAATGG AAGAAAACCA TTAAAATGAT CTAAAGCAAG CAAGTTGAAC TAGCTTTTAA 185893 .......... .......... .......... .......... .......... .......... 679 GTCTAATCAG AACCTACCAG GACTACAAAA CAAGTCAATT TACTTCATCA AAAACTCATT 185833 .......... .......... .......... .......... .......... .......... 679 CAGAAAAATA AGGGGAGCTA ACATAGAAGA CTTTATATAT AGCTTAATCT ATCTGTGAAG 185773 .......... .......... .......... .......... .......... .......... 679 GGATTTTCTT GATTTCTATT CCTAGTTCTT GTTCAATTCT ATATGTCACA ATCAGATATA 185713 .......... .......... .......... .......... .......... .......... 679 TACTTTTAGT AGTAGTAGAA ATCAACACAT AGAGCTTAAT GATCTAGTAC AAAGTAAATG 185653 .......... .......... .......... .......... .......... .......... 679 AACATAATTA GTCCATACAA AGTGAAGTGA TCCTCAAAAG TAACATGGCT AACAACTAAA 185593 .......... .......... .......... .......... .......... .......... 679 CCAAACTTCA CAAATCTCCC TAATTGTCCA ACCTGCAAAA TAAATTACCA AAGATGAAAT 185533 .......... .......... .......... .......... .......... .......... 679 AGCAAAAAAA TATATAAGCC AATAAGCAAG ATCAAATATA TGTTATACAT ACCCTGTGCA 185473 .......... .......... .......... .......... .......... .......... 679 AATACGTTTC TGTGTTCTTA GGAAAATCAG AATTGATAAC AACGTTAACT GCTTGAATAT 185413 .......... .......... .......... .......... .......... .......... 679 CAATTCCTCT AGTAAACAAA TCTAATCTAT TAATAAAGAA CACAAAATTA TGAAATTTAA 185353 .......... .......... .......... .......... .......... .......... 679 CAATTAATCA ATTTTAAATT TCAGTTGTAA GAGCCCCAAA AGTAATCAAT TTCTTCTAAA 185293 ||| | || ||||||| | .......... .......... ....TTGAAG GACCCCCAAA A......... .......... 696 CACAAAATAA AAATTTCTTC TAAAAACAAA CTACTGATCC AAACAAGTTC ATCAAAAGAA 185233 .......... .......... .......... .......... .......... .......... 696 TAAATCCTAG TAGTATAAAC AAATTGGCTA CTTAATGTAG TATCGATGAG TACTACGAAT 185173 .......... .......... .......... .......... .......... .......... 696 GATTAGCACT ATAAACCAAA GAATCCATTA GCTTCTAGGT TCCAAGAAAC AAATAAATAA 185113 .......... .......... .......... .......... .......... .......... 696 TGGAATGCTA TCCAAAACCG AAACAAGACG GAACTATAAA TATATTGAAG CATGCTGGAA 185053 .......... .......... .......... .......... .......... .......... 696 ATGGATCTAT TGAACTTTAA ATTGTTACAA ACTTACTCAC TTAGAAGCAA ATATGGACAG 184993 .......... .......... .......... .......... .......... .......... 696 AAATTTGAAA CATCTGAAAA TATGAAGCTA TGTTCTGGTT TAAGAGCAGA ACTATGAAGA 184933 .......... .......... .......... .......... .......... .......... 696 ATTATTATCA TACACTCTCA CCACATTCTT TTCATATTTT GAATGTCCAA AACAACTTGA 184873 .......... .......... .......... .......... .......... .......... 696 CAGAACTGAT ATTACTCAAG GACAAATGCA ACCAGTAAAT AAAATTACAG TAGTAAAATG 184813 .......... .......... .......... .......... .......... .......... 696 AAGACACATA CTGAGAATTA TTCATCAATA CTCAGCAATC ATGAAGTAAA ATTACAGAAT 184753 .......... .......... .......... .......... .......... .......... 696 GTCACTGGAA ATGCAACATC TAGTACAAAA GTTCCAGCAA CTCATTTGTA GGTTTGAATT 184693 .......... .......... .......... .......... .......... .......... 696 CTTTGGGTGC AAACATATTT ATAGGGAAGA AAACTAAACA ACTAACTAAC TATCCAAATG 184633 .......... .......... .......... .......... .......... .......... 696 AAGCCACATA TTGGACATTA TTGATCAATA ATATACAGAA AAACAATACC CTCTACTGCT 184573 .......... .......... .......... .......... .......... .......... 696 AAGGGTAGCT ATTTTTTAGA AAAAAACATA GATGAAAAAC TTCAGGATAA GGAAGCTCAA 184513 .......... .......... .......... .......... .......... .......... 696 GAGAATGAAG AACACACCTT AAGAATCCAC CTTGAACCCT CAAATAATCA GAATCAGAAT 184453 .......... .......... .......... .......... .......... .......... 696 CATATGTTAT GGGATGATCA TAATTATTGT GAGTTTTGAG TTTCGAGTAC CTTGTTACTA 184393 .......... .......... .......... .......... .......... .......... 696 TTCTTGATTC TAATAAATAC ATAATAATAA CTACAAAATT GTATGTCATT ATTTCATGGA 184333 .......... .......... .......... .......... .......... .......... 696 TGAAATATAG TCATTTTACT GTTAAGAGAT CAGAAATACC TTGATTTTTG ATGTCTACAT 184273 .......... .......... .......... .......... .......... .......... 696 AATGTTAGTT TCCTCTCAGC AAAACCTGAA ATAGCAGAGA ATATTTCATG GTTTAGAAAA 184213 .......... .......... .......... .......... .......... .......... 696 AAGTTTGATC GAAGTGTTCG TATGCAAAAG TAAAAAATTA CAGAAATAGT ATCTTTATAC 184153 .......... .......... .......... .......... .......... .......... 696 AGACAACAAG AGATTTTATT TCTTTTAGAG GAAAAATAAA AACTGTAGCA TGCTATTTCG 184093 .......... .......... .......... .......... .......... .......... 696 GAAGGCTAAT GAACAGTGAG ACATCTCTTC TTACATTGCA ACTTTACTAG GCAACTGCAA 184033 .......... .......... .......... .......... .......... .......... 696 TGTAATACAA ATGTTTTTCA GTACTACCTA AGTACTATTT GAAATAAAAA TGTTACTAGT 183973 .......... .......... .......... .......... .......... .......... 696 TTAAAAATAA TTTTATAGAA AACATATCTT TTACTATATA TTCTAGTAGA TTGCAGATTC 183913 .......... .......... .......... .......... .......... .......... 696 TGTGAAGTAT TTCTATTAAT CGAGATCCAT ATGATATGCT TGGAACATAA AAAACAGAAA 183853 .......... .......... .......... .......... .......... .......... 696 TATAATAAAG CATATAAATT GAGTTGATAA GGATAAACAA AATAAGAAAA CATAAAAAAT 183793 .......... .......... .......... .......... .......... .......... 696 CAGAAATATA TTAAAGCATA TAAGCTTTTT CAGTTCGTTA GTCATCATTA TATCTCCAAT 183733 .......... .......... .......... .......... .......... .......... 696 ATCAATGTAG AAAAGGGGGA AGATGACACA CATTGATCAA AGTACTCCAA ATTTACAAAA 183673 ||| ||||| | | | .......... AAAGCGGGGA AAAGG..... .......... .......... .......... 711 ACATAGAACA TGATGAATCA TTGTCTACTC CCAAGGCTGA AACATCTTCC TACACTATTA 183613 .......... .......... .......... .......... .......... .......... 711 TCCAATCATT TTCTGCTTGA TTAAGAAAAA ATCAGGCTCA AAA 183570 | | ||| .......... .......... .......... .....GGGGA AAA 719 hqPGS_C01HBa0216G16.1-_SGN-U335075+ (192130 191876) ******************************************************************************** EST sequence 4 -strand 920 n (File: SGN-U335071-) 1 AAGGCTAGAT AATTATATAA TGAGAAGATG ATGCCTTGTG TAAAAGAAGC CTGATGGATT 61 GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGAATGAT TATGAGGATC GGAGTGTCAC 121 GTTCCGACCC CAGGATAGAT ATGGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATAT 181 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAAAAT GGATCGGGTG CCACGTTCCG 241 GTACCAGGAT AGAATGAGGA TCGGAGTGCC ACGTTCCGGC ACCAGGATAG AAATAGAGGA 301 TCGGAGTGTC ACGTACCGAC ACAAGAGGAA GAAAGATAAT GAATCTTGAA AGATAATGAA 361 TATACTCAAT CTAATGAACT TAATTCCCAA ATGAGTATGG TATTGAGGCT TGAGTCCTCA 421 TGTGTGAACT CGGTTGTAGT TATTGATGAA TTCATGGTGT TATTGCTACA TGTTGAGTAT 481 TGTAGTTGAT TTACATTATT ATTGATATAT ACTGTTCCCT ATTTTGAGTT GGCCGATGAT 541 ATCTACTCAG TACGTGTGGT TGTACTGACC CCTACTTTCA TGTTTTCCTC TTTGTTATTT 601 GTGTAATGCA GCAAACGTTC CGTCAACTTC AACTCAACAG TAGATCTAGC CAGTCTTCAC 661 TTCATCGGAA AATTCAGGGT GAGCTAATGC GTCTAGCTTG GACTGGGTCT TCTTCTTCAA 721 GTCTTGATGC CTTGAATTTC CGGCATGGAC TAGCTTTTTA GTTATTTTGT TCTTAGACAT 781 TCCTAGTTAA GTAATTTGAG ATAGATGTTC TTGTGATGAT GACTTCCAGA TTTTGGGGAT 841 AATAATAATA GTATTGAATT GTTTTTATTA AAAAAAAAAA AAAAAAAAAA AAAAACTCGA 901 GGGGGGGCCC GGTCCCAATG Predicted gene structure (within gDNA segment 196870 to 190506): Exon 1 192625 192523 ( 103 n); cDNA 175 282 ( 108 n); score: 0.597 Intron 1 192522 192456 ( 67 n); Pd: 0.000 (s: 0.54), Pa: 0.000 (s: 0.68) Exon 2 192455 191896 ( 560 n); cDNA 283 841 ( 559 n); score: 0.774 PPA cDNA 870 896 MATCH C01HBa0216G16.1- SGN-U335071- 0.747 663 0.721 C PGS_C01HBa0216G16.1-_SGN-U335071- (192625 192523,192455 191896) Alignment (genomic DNA sequence = upper lines): GAGGTTAGGG GATCGG-GTG TCACGAACCG ACACGTAG-T A-ATAATGGA TTGGGTGTCA 192569 || | | | |||||| ||| ||||| ||| |||| | | | | |||||| | ||||| || GAATAT-GAG GATCGGAGTG TCACGTTCCG ACACCAGGAT AGAAAATGGA TCGGGTGCCA 233 CGAACCGACA CGCAGTAT-T AAT--GGATC GG-GTGTCAC GAACCGACAC GTAGTATTAG 192513 || ||| | | ||| || ||| ||||| || ||| ||| | ||| ||| CGTTCCGGTA C-CAGGATAG AATGAGGATC GGAGTGCCAC GTTCCGGCAC .......... 282 GGGATCGGGT GTCACAAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 192453 || .......... .......... .......... .......... .......... .......CAG 285 G-TAGTATTA GGGGATTGGA GTGTCACGTT CCAACACCAG GATAGTAAAA AGAATGAAT- 192395 | ||| | || | |||| ||| ||||||||| || |||| || | ||| | ||||||| GATAGAAATA GAGGATCGGA GTGTCACGTA CCGACACAAG AGGAAGAAAG ATAATGAATC 345 TTGAATTAT- GTTACTGTAC TCAATTTAAT GAACCTGTTT CCCAAATGGG TATGGTGTGG 192336 ||||| || | | | ||| ||||| |||| |||| | || |||||||| | |||||| | | TTGAAAGATA ATGAATATAC TCAATCTAAT GAACTTAATT CCCAAATGAG TATGGTATTG 405 AGGCTTGAGT CCTCATGGAT GTGCTTGGGT TGTGCCCAAT G-GCCATGGT ACTTGTTGTT 192277 |||||||||| ||||||| | | | | ||| ||| | | | || |||| || AGGCTTGAGT CCTCATGTGT GAAC-TCGGT TGTAGTTATT GATGAATTCA TGGTGTTATT 464 GACACCTGTT AAGTGTTATG TTTGATTTTA TGTTATTATT CGATATATAT TGTTTTCTAT 192217 | || |||| ||| || | |||| |||| |||||||| |||||||| |||| |||| GCTACATGTT GAGTATTGTA GTTGA-TTTA CATTATTATT -GATATATAC TGTTCCCTAT 522 TTTGAGTTGG CCGATGATAT CTACTCAGTA CTCGTGTTTT GTACTGACCC CTACTTGTAT 192157 |||||||||| |||||||||| |||||||||| | ||| || |||||||||| |||||| || TTTGAGTTGG CCGATGATAT CTACTCAGTA CGTGTG-GTT GTACTGACCC CTACTTTCAT 581 GTTTT-CTTT TTGTTAATTG TGGAGTGCAG CAAACGTAGC GTCGTCTTCA ACTCAACCGC 192098 ||||| || | |||||| ||| || | ||||| ||||||| | ||| ||||| ||||||| | GTTTTCCTCT TTGTTATTTG TGTAATGCAG CAAACGTTCC GTCAACTTCA ACTCAACAGT 641 AACTCTAGCC AGTCTT--CG TCACGTCAGA TTTCAGGGTG AGCTATTGTT TCTAGCTTGG 192040 | ||||||| |||||| | ||| | | ||||||||| ||||| || |||||||||| AGATCTAGCC AGTCTTCACT TCATCGGAAA ATTCAGGGTG AGCTAATGCG TCTAGCTTGG 701 ACTGGGTCTT GTTCTTCACG TCTTGATGCC TTGAAGTTCT GGCATGGACT ATCTGTTTAG 191980 |||||||||| ||||||| | |||||||||| ||||| ||| |||||||||| | || ||||| ACTGGGTCTT CTTCTTCAAG TCTTGATGCC TTGAATTTCC GGCATGGACT AGCTTTTTAG 761 TTATTTTAGC TTCTTAGATA CTCTAAGACT TAGTAATTTG AGGATAGATG TTCTTGTGAT 191920 ||||||| | |||||||| | || || | ||||||||| | |||||||| |||||||||| TTATTTT-G- TTCTTAGACA TTCCTAG-TT AAGTAATTTG A-GATAGATG TTCTTGTGAT 817 GGTGACTTCC AGATTTTGGG GATA 191896 | |||||||| |||||||||| |||| GATGACTTCC AGATTTTGGG GATA 841 hqPGS_C01HBa0216G16.1-_SGN-U335071- (192455 191896) ******************************************************************************** EST sequence 32 +strand 647 n (File: SGN-U315283+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG TTATTGAATT GGTTTTTATA AAAAAAA Predicted gene structure (within gDNA segment 196870 to 190930): Exon 1 192126 192118 ( 9 n); cDNA 453 461 ( 9 n); score: 0.778 Intron 1 192117 192051 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 192050 191900 ( 151 n); cDNA 462 611 ( 150 n); score: 0.907 MATCH C01HBa0216G16.1- SGN-U315283+ 0.907 160 0.247 C PGS_C01HBa0216G16.1-_SGN-U315283+ (192126 192118,192050 191900) Alignment (genomic DNA sequence = upper lines): AAACGTAGCG TCGTCTTCAA CTCAACCGCA ACTCTAGCCA GTCTTCGTCA CGTCAGATTT 192067 |||| ||| AAACAAAGC. .......... .......... .......... .......... .......... 461 CAGGGTGAGC TATTGTTTCT AGCTTGGACT GGGTCTTGTT CTTCACGTCT TGATGCCTTG 192007 |||| |||||||||| || |||| || ||||| |||| |||||||||| .......... ......TTCT AGCTTGGACT GGATCTTCTT CTTCATGTCT TGATGCCTTG 505 AAGTTCTGGC ATGGACTATC TGTTTAGTTA TTTTAGCTTC TTAGATACTC TAAGACTTAG 191947 |||||| ||| |||||||| | |||||| || |||||||||| |||||||||| | ||| |||| AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC TTAGATACTC TTAGATTTAG 565 TAATTTGAGG ATAGATGTTC TTGTGATGGT GACTTCCAGA TTTTGGG 191900 ||||| || | ||||||||| |||||||| | ||||||||| ||||||| TAATTCGAAG -TAGATGTTC TTGTGATGAT AACTTCCAGA TTTTGGG 611 hqPGS_C01HBa0216G16.1-_SGN-U315283+ (192050 191900) ******************************************************************************** EST sequence 5 -strand 969 n (File: SGN-U335080-) 1 GTGGAGGTAG GTAATGGTTT AAGTATTTCC ATAGTAACTT TTAATAGCAA TTGATATGTA 61 TTGGGTAGTA TTGTAAAGTC TTTTATATGC TTAATTGTAT GCTTGCATGA TGTGATTATG 121 AAATTGTAAT GGGTTGGAAA GATAAGGTTG TGAAGCTTAA AACCTAAAAC CCTCTTTGTT 181 AATGATGATG TCTTGGTATA AAAGAAGGCT TGATGAACTA AAAGAATGAG GTTAGGGGAT 241 CGGGTGTCAC GAACCGACAC GTAGTATTAA TGGATCGGGT GTCACGAACC GACACATAGT 301 ATTAATGGAT CGGGTGTCAC GAATCGGCAC GTAGTATTAG GAGATCGGGT GTAACGAACC 361 GACACGTAGT ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGCATTAG GGGATCGGAG 421 TATCACGTTC CGACACCACG ATAGTAAAAA GAATGAATCT TGAATTATGT TAATGTACTC 481 AATTTAATGA ACCTGTTTCC CAAATGAGTA TGGTGTGGAG GCTTGAGTCC TCATAGATGT 541 TCTTGGGTTG TGCCCAATGG TTATGGTACT TGTTGTTGTC ACCTGTTAAG TGTTATGGTT 601 GATTTTATTT TATTATTTGA TATATATTGT TCTCTATTCT GAGTTGGCCG ATGATATCTA 661 CTCAGTACTC GTGTTTGTAC TGACCCCTAC TTTTATGTTT TCTTTTTGTT AATTGTGGAG 721 TGCAGCAAAC GTACCGTCGT CTTCAACTCA ACCGCAACTC TAACCAGTCT TCATCACGTC 781 AGATTTCAGG GTGAGCTATT GTTCCTAGCT CGGACTGGAT TCTCTCTCAT TCATGTCTTG 841 ATGTCCTTGA AGATCAGACA TGCTGGTGCC GAATTCCTGC AGCCCGGGGG ATCCACTAGT 901 TCTAGAGCGG CAGCCACCGC GGTGANGCCG ATCGCATTGC ATTTCATTNN NNNNNNNGNA 961 NACTCTCGT Predicted gene structure (within gDNA segment 194893 to 189790): Exon 1 192693 192001 ( 693 n); cDNA 160 855 ( 696 n); score: 0.922 MATCH C01HBa0216G16.1- SGN-U335080- 0.922 693 0.715 C PGS_C01HBa0216G16.1-_SGN-U335080- (192693 192001) Alignment (genomic DNA sequence = upper lines): AAACCTAAAA CCCTCTTTGT TAATAATGAT GCCTTGGTAT AAAAGAAGGT TTGATGAACT 192634 |||||||||| |||||||||| |||| ||||| | |||||||| ||||||||| |||||||||| AAACCTAAAA CCCTCTTTGT TAATGATGAT GTCTTGGTAT AAAAGAAGGC TTGATGAACT 219 AAAAGAATGA GGTTAGGGGA TCGGGTGTCA CGAACCGACA CGTAGTAATA ATGGATTGGG 192574 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| AAAAGAATGA GGTTAGGGGA TCGGGTGTCA CGAACCGACA CGTAGTATTA ATGGATCGGG 279 TGTCACGAAC CGACACGCAG TATTAATGGA TCGGGTGTCA CGAACCGACA CGTAGTATTA 192514 |||||||||| |||||| || |||||||||| |||||||||| |||| || || |||||||||| TGTCACGAAC CGACACATAG TATTAATGGA TCGGGTGTCA CGAATCGGCA CGTAGTATTA 339 GGGGATCGGG TGTCACAAAC CGACACGTAG TATTAATGGA TCGGGTGTCA CGAACCGACA 192454 || ||||||| ||| || ||| |||||||||| ||||| ||| |||||||||| |||||||||| GGAGATCGGG TGTAACGAAC CGACACGTAG TATTAGGGGA TCGGGTGTCA CGAACCGACA 399 CGTAGTATTA GGGGATTGGA GTGTCACGTT CCAACACCAG GATAGTAAAA AGAATGAAT- 192395 ||||| |||| |||||| ||| || ||||||| || |||||| |||||||||| ||||||||| CGTAGCATTA GGGGATCGGA GTATCACGTT CCGACACCAC GATAGTAAAA AGAATGAATC 459 TTGAATTATG TTACTGTACT CAATTTAATG AACCTGTTTC CCAAATGGGT ATGGTGTGGA 192335 |||||||||| ||| |||||| |||||||||| |||||||||| ||||||| || |||||||||| TTGAATTATG TTAATGTACT CAATTTAATG AACCTGTTTC CCAAATGAGT ATGGTGTGGA 519 GGCTTGAGTC CTCATGGATG TGCTTGGGTT GTGCCCAATG GCCATGGTAC TTGTTGTTGA 192275 |||||||||| ||||| |||| | |||||||| |||||||||| | ||||||| ||||||||| GGCTTGAGTC CTCATAGATG TTCTTGGGTT GTGCCCAATG GTTATGGTAC TTGTTGTTGT 579 CACCTGTTAA GTGTTATGTT TGATTTTATG TTATTATTCG ATATATATTG TTTTCTATTT 192215 |||||||||| |||||||| | ||||||||| |||||||| | |||||||||| || |||||| CACCTGTTAA GTGTTATGGT TGATTTTATT TTATTATTTG ATATATATTG TTCTCTATTC 639 TGAGTTGGCC GATGATATCT ACTCAGTACT CGTGTTTTGT ACTGACCCCT ACTTGTATGT 192155 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||| ||||| TGAGTTGGCC GATGATATCT ACTCAGTACT CGTG-TTTGT ACTGACCCCT ACTTTTATGT 698 TTTCTTTTTG TTAATTGTGG AGTGCAGCAA ACGTAGCGTC GTCTTCAACT CAACCGCAAC 192095 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTCTTTTTG TTAATTGTGG AGTGCAGCAA ACGTACCGTC GTCTTCAACT CAACCGCAAC 758 TCTAGCCAGT CTTCGTCACG TCAGATTTCA GGGTGAGCTA TTGTTTCTAG CTTGGACTGG 192035 |||| ||||| |||| ||||| |||||||||| |||||||||| ||||| |||| || ||||||| TCTAACCAGT CTTCATCACG TCAGATTTCA GGGTGAGCTA TTGTTCCTAG CTCGGACTGG 818 -GTCT-TGTT CTTCACGTCT TGATG-CCTT GAAGTTC 192001 ||| | | |||| |||| ||||| |||| |||| || ATTCTCTCTC ATTCATGTCT TGATGTCCTT GAAGATC 855 hqPGS_C01HBa0216G16.1-_SGN-U335080- (192693 192001) ******************************************************************************** EST sequence 28 +strand 809 n (File: SGN-U335078+) 1 NTTGAAAACA AAAGCTGGAG CTCCACCGCG GTGGCGGCCG CTCTAGAACT AGTGGATCCC 61 CCGGGCTGCA GGAATTCGGC ACCAGCCCTA ATCTACTTTG TTAATAATGA TGCCTTGGTA 121 TAAAAGAAGG CTTGATGAAC GAAAGTGGTG AGATTAGGGG ATCGGGTGCC ACGTTCCGGT 181 ACCAGGATAG AATATGGATC GGGTGTCACG TTCCGACACC AGGATAGAAT ATGGATCGGG 241 TGCCACGTTC CGGTACCAGG ATAGAATATG GATCGGGTGT CACGTTCCGA CACCAGGATA 301 GAATATGGAT CGGGTGTCAC GTTCTGACAC CAGGATAGAA TATGGATCGG GTGCCACGTT 361 CCGGTGCCAG GATAGTATAT TGAGGAGTGG AGTGTCACGT AAGGACACGA GGGGAATAAA 421 TATGATGAAT CTTGAAATAT GTTAATATAT GCAATCCAAT GAACTAAATT CCCAAATAAG 481 TATGATGAGG AGGTGTGAGT CCTCATTGAT GTGCTTGGTG ATGCAACCAA GGGTTATGGT 541 AATTGCAAAT GCTGCATGCT AAGGATATTA GTTAATTTTA TGATATTGCT TAATACATAC 601 TGGTATCTAT TTTGAGTTGG CCGACGATGT CTACTCAATA CCCGTGTTTT GTACTGACCC 661 CTACTTTTAT TGTTACTTCC TGGGTATTTG GGGAGAGCAG CAAACGTGCC GTCACCTTAT 721 ACTTCACCGT AACTCAAGGC TGGCTTTACT ACAATGGAAA ATTCAGGGGG GGCTGATGTT 781 TCCTACTGGG ACTTGGACAT TTTTTTTTG Predicted gene structure (within gDNA segment 194229 to 190121): Exon 1 192624 192093 ( 532 n); cDNA 189 735 ( 547 n); score: 0.675 MATCH C01HBa0216G16.1- SGN-U335078+ 0.675 532 0.658 C PGS_C01HBa0216G16.1-_SGN-U335078+ (192624 192093) Alignment (genomic DNA sequence = upper lines): AGGTTAGGGG ATCGGGTGTC ACGAACCGAC ACGTAG-TA- ATAATGGATT GGGTGTCACG 192567 || || || |||||||||| ||| ||||| || | || | |||||| ||||| |||| AGAATA-TGG ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG 247 AACCGACACG CAG-TATTA- ATGGATCGGG TGTCACGAAC CGACACGTAG -TATTA-GGG 192511 ||| || | || | |||||||||| ||||||| | |||||| | || | | TTCCGGTACC AGGATAGAAT ATGGATCGGG TGTCACGTTC CGACACCAGG ATAGAATATG 307 GATCGGGTGT CACAAACCGA CACGTAG-TA TTA-ATGGAT CGGGTGTCAC GAACC-GA-- 192456 |||||||||| ||| | || ||| | || | |||||| |||||| ||| | || | GATCGGGTGT CACGTTCTGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTGC 367 CACG-TAGTA T-TAGGGGAT TGGAGTGTCA CGTTCCAACA CCAGGATAGT AAAAAGAATG 192398 || | ||||| | | | ||| |||||||||| ||| ||| | ||| | | ||| | ||| CAGGATAGTA TATTGAGGAG TGGAGTGTCA CGTAAGGACA CGAGGGGAAT AAATATGATG 427 AAT-TTGAAT TATGTTACTG TACTCAATTT AATGAACCTG TTTCCCAAAT GGGTATGGTG 192339 ||| ||||| ||||||| | || |||| ||||||| ||||||||| ||||| || AATCTTGAAA TATGTTAATA TATGCAATCC AATGAACTAA ATTCCCAAAT AAGTATGATG 487 TGGAGGCTTG AGTCCTCATG GATGTGCTTG G-GTTGTGCC CAATGGCCAT GGTACTTGTT 192280 ||||| || ||||||||| |||||||||| | | || | ||| || || |||| ||| AGGAGGTGTG AGTCCTCATT GATGTGCTTG GTGATGCAAC CAAGGGTTAT GGTAATTGCA 547 GTTGACACCT GTTAAGTGTT ATGTTTGATT TTATGTTATT ATTCGATATA TATTGTTTTC 192220 || | | | |||| | | || ||| ||||| |||| | ||| | || || | || AATGCTGCAT GCTAAGGATA TTAGTTAATT TTATGATATT GCTTAATACA TACTGGTATC 607 TATTTTGAGT TGGCCGATGA TATCTACTCA GTACTCGTGT TTTGTACTGA CCCCTACTTG 192160 |||||||||| ||||||| || | |||||||| ||| ||||| |||||||||| ||||||||| TATTTTGAGT TGGCCGACGA TGTCTACTCA ATACCCGTGT TTTGTACTGA CCCCTACTTT 667 TATGTTTTCT T-TTTGTTAA TTGTGGAGTG CAGCAAACGT AGCGTCGTCT TCAACTCAAC 192101 ||| || || | | | || ||| |||| | |||||||||| |||| || | ||| || TATTGTTACT TCCTGGGTAT TTGGGGAGAG CAGCAAACGT GCCGTCACCT TATACTTCAC 727 CGCAACTC 192093 || ||||| CGTAACTC 735 hqPGS_C01HBa0216G16.1-_SGN-U335078+ (192624 192093) Total number of EST alignments reported: 41 ________________________________________________________________________________ Predicted gene locations (15) in segment 1 to 196870: PGL 1 (- strand): 22347 22044 AGS-1 (22347 22044) SCR (e 0.852) Exon 1 22347 22044 ( 304 n); score: 0.852 PGS (22347 22044) SGN-U336946- PGS (22347 22044) SGN-U340944- PGS (22347 22046) SGN-U319860- PGS (22343 22046) SGN-U319858- PGS (22346 22100) SGN-U341660- 3-phase translation of AGS-1 (-strand): . . . . . . 22347 AAAAGTGGTGGTTTAATTGGAGCAGCCCATCAGGCGTTATTGTACTTAGGAGGGTACCGA K S G G L I G A A H Q A L L Y L G G Y R K V V V - L E Q P I R R Y C T - E G T D K W W F N W S S P S G V I V L R R V P . . . . . . 22287 CTCGTTATCCTTCCACTGCATAAAGCGGGAACTGTTCGTTGCTCTGTGAAACCAGCCTCA L V I L P L H K A G T V R C S V K P A S S L S F H C I K R E L F V A L - N Q P H T R Y P S T A - S G N C S L L C E T S L . . . . . . 22227 CGCAGTCCGCTCAACTTTAGGAACCCAACAGCCCATTCCTTCGATTGGGTAGCAAGGCCC R S P L N F R N P T A H S F D W V A R P A V R S T L G T Q Q P I P S I G - Q G P T Q S A Q L - E P N S P F L R L G S K A . . . . . . 22167 AGCTCTATGTTTGGACAGGGCAGGCCAGAAATTAGCCCACCAGGCCCAACCATCTGGAAC S S M F G Q G R P E I S P P G P T I W N A L C L D R A G Q K L A H Q A Q P S G T Q L Y V W T G Q A R N - P T R P N H L E . . . . . . 22107 AGCCCAACATTCCACCATACTAATGCCCCCGCTTGGGTTACAAGCCCATGTTACTAAGCT S P T F H H T N A P A W V T S P C Y - A A Q H S T I L M P P L G L Q A H V T K L Q P N I P P Y - C P R L G Y K P M L L S . 22047 CGGC R G S Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-1_AGS-1_PPS_1 (22347 22051) (frame '1'; 294 bp, 98 residues) 1 KSGGLIGAAH QALLYLGGYR LVILPLHKAG TVRCSVKPAS RSPLNFRNPT AHSFDWVARP 61 SSMFGQGRPE ISPPGPTIWN SPTFHHTNAP AWVTSPCY- 3-phase translation of AGS-1 (+strand): . . . . . . 22044 GCCGAGCTTAGTAACATGGGCTTGTAACCCAAGCGGGGGCATTAGTATGGTGGAATGTTG A E L S N M G L - P K R G H - Y G G M L P S L V T W A C N P S G G I S M V E C W R A - - H G L V T Q A G A L V W W N V . . . . . . 22104 GGCTGTTCCAGATGGTTGGGCCTGGTGGGCTAATTTCTGGCCTGCCCTGTCCAAACATAG G C S R W L G L V G - F L A C P V Q T - A V P D G W A W W A N F W P A L S K H R G L F Q M V G P G G L I S G L P C P N I . . . . . . 22164 AGCTGGGCCTTGCTACCCAATCGAAGGAATGGGCTGTTGGGTTCCTAAAGTTGAGCGGAC S W A L L P N R R N G L L G S - S - A D A G P C Y P I E G M G C W V P K V E R T E L G L A T Q S K E W A V G F L K L S G . . . . . . 22224 TGCGTGAGGCTGGTTTCACAGAGCAACGAACAGTTCCCGCTTTATGCAGTGGAAGGATAA C V R L V S Q S N E Q F P L Y A V E G - A - G W F H R A T N S S R F M Q W K D N L R E A G F T E Q R T V P A L C S G R I . . . . . . 22284 CGAGTCGGTACCCTCCTAAGTACAATAACGCCTGATGGGCTGCTCCAATTAAACCACCAC R V G T L L S T I T P D G L L Q L N H H E S V P S - V Q - R L M G C S N - T T T T S R Y P P K Y N N A - W A A P I K P P . 22344 TTTT F F L Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-1_AGS-1_PPS_1 (22058 22318) (frame '0'; 258 bp, 86 residues) 1 HGLVTQAGAL VWWNVGLFQM VGPGGLISGL PCPNIELGLA TQSKEWAVGF LKLSGLREAG 61 FTEQRTVPAL CSGRITSRYP PKYNNA- PGL 2 (+ strand): 33155 34762 AGS-1 (33155 33375) SCR (e 0.889) Exon 1 33155 33375 ( 221 n); score: 0.889 PGS (33155 33375) SGN-U313960+ 3-phase translation of AGS-1 (+strand): . . . . . . 33155 GCAAGAAGGGTGGACCTCGAACTCATAAAGAACAAGTTATGGACACCACCAATTATCCTA A R R V D L E L I K N K L W T P P I I L Q E G W T S N S - R T S Y G H H Q L S Y K K G G P R T H K E Q V M D T T N Y P . . . . . . 33215 CTCCAAAATTTCGTATCAGGAAATAGAAATCTTCATGGCACAATGTACATTTTTTTGAAT L Q N F V S G N R N L H G T M Y I F L N S K I S Y Q E I E I F M A Q C T F F - M T P K F R I R K - K S S W H N V H F F E . . . . . . 33275 GAATTGTTTTTTTAAAAACTTATGAACAATTTATGTATTTTTCCAGTTTTTTTATTATGA E L F F - K L M N N L C I F P V F L L - N C F F K N L - T I Y V F F Q F F Y Y D - I V F L K T Y E Q F M Y F S S F F I M . . . . . 33335 CCACTGATGGTTTTATATAAATTATTACTGATTATTACTAA P L M V L Y K L L L I I T H - W F Y I N Y Y - L L L T T D G F I - I I T D Y Y - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 33375 TTAGTAATAATCAGTAATAATTTATATAAAACCATCAGTGGTCATAATAAAAAAACTGGA L V I I S N N L Y K T I S G H N K K T G - - - S V I I Y I K P S V V I I K K L E S N N Q - - F I - N H Q W S - - K N W . . . . . . 33315 AAAATACATAAATTGTTCATAAGTTTTTAAAAAAACAATTCATTCAAAAAAATGTACATT K I H K L F I S F - K N N S F K K M Y I K Y I N C S - V F K K T I H S K K C T L K N T - I V H K F L K K Q F I Q K N V H . . . . . . 33255 GTGCCATGAAGATTTCTATTTCCTGATACGAAATTTTGGAGTAGGATAATTGGTGGTGTC V P - R F L F P D T K F W S R I I G G V C H E D F Y F L I R N F G V G - L V V S C A M K I S I S - Y E I L E - D N W W C . . . . . 33195 CATAACTTGTTCTTTATGAGTTCGAGGTCCACCCTTCTTGC H N L F F M S S R S T L L I T C S L - V R G P P F L P - L V L Y E F E V H P S C Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (33489 33596,33780 34310,34731 34762) SCR (e 0.782 d 0.000 a 0.000,e 0.756 d 0.000 a 0.000,e 0.781) Exon 1 33489 33596 ( 108 n); score: 0.782 Intron 1 33597 33779 ( 183 n); Pd: 0.000 Pa: 0.000 Exon 2 33780 34310 ( 531 n); score: 0.756 Intron 2 34311 34730 ( 420 n); Pd: 0.000 Pa: 0.000 Exon 3 34731 34762 ( 32 n); score: 0.781 PGS (33489 33596,33780 34310,34731 34762) SGN-U346995- 3-phase translation of AGS-2 (+strand): . . . . . . 33489 CCATAAATTTATTTTGCATGAATACTATACACTTTCAAATACAAACAGAAACAGATATTA P - I Y F A - I L Y T F K Y K Q K Q I L H K F I L H E Y Y T L S N T N R N R Y - I N L F C M N T I H F Q I Q T E T D I . . . . . : . 33549 ATTATATTACTGGTATAAATAATGTATGAAAAATGTATGAATTATATC : ATATTATATTTT I I L L V - I M Y E K C M N Y I : I L Y F L Y Y W Y K - C M K N V - I I S : Y Y I L N Y I T G I N N V - K M Y E L Y : H I I F . . . . . . 33792 AATATTTATAACATAAACATACATTATTTTTTTATATGCAAGTATTGAATTTGTATAAAT N I Y N I N I H Y F F I C K Y - I C I N I F I T - T Y I I F L Y A S I E F V - M - Y L - H K H T L F F Y M Q V L N L Y K . . . . . . 33852 GTATAAATTTTGTATGTAGTCTCCATTATGAATGCAATAATTGAATAAATGTTATATGAT V - I L Y V V S I M N A I I E - M L Y D Y K F C M - S P L - M Q - L N K C Y M I C I N F V C S L H Y E C N N - I N V I - . . . . . . 33912 TATATGAATTATTATTGTTAAAATTTGTTAATATATGAACAGTTGTATATACAACGTATG Y M N Y Y C - N L L I Y E Q L Y I Q R M I - I I I V K I C - Y M N S C I Y N V - L Y E L L L L K F V N I - T V V Y T T Y . . . . . . 33972 ACATTTGTATGAAAAGTAATATTATTCAATAAAAAATATTTTATAACAATGTAAACCCTC T F V - K V I L F N K K Y F I T M - T L H L Y E K - Y Y S I K N I L - Q C K P S D I C M K S N I I Q - K I F Y N N V N P . . . . . . 34032 AAAAACACATATTTAACAGTACGACATCATTGTTTTTGTACAGGATAATTTGAACAAGTC K N T Y L T V R H H C F C T G - F E Q V K T H I - Q Y D I I V F V Q D N L N K S Q K H I F N S T T S L F L Y R I I - T S . . . . . . 34092 TTCCTCTTGTGTCCAACCTGATGGCATCTACTGGATGTGCTTTTTGTCCTCTTGAATTTC F L L C P T - W H L L D V L F V L L N F S S C V Q P D G I Y W M C F L S S - I S L P L V S N L M A S T G C A F C P L E F . . . . . . 34152 ACATCTGCGAACCCCTTCCACCGTTCAAGTTTGGGTCTTCCTTCTGCTCTTTTTGGACCA T S A N P F H R S S L G L P S A L F G P H L R T P S T V Q V W V F L L L F L D Q H I C E P L P P F K F G S S F C S F W T . . . . . . 34212 GGCGGCATCAATTTAGGATTTGAAATATAACTTGGTATATCCCATGTACTCTCGCACGGG G G I N L G F E I - L G I S H V L S H G A A S I - D L K Y N L V Y P M Y S R T G R R H Q F R I - N I T W Y I P C T L A R . . . . : . . 34272 ATAGGCTCGACAAGAATGGCATAAGCATCTTTGAAATTC : ATACATAATTAATACACACTT I G S T R M A - A S L K F : I H N - Y T L - A R Q E W H K H L - N S : Y I I N T H F D R L D K N G I S I F E I : H T - L I H T . . 34752 CATACACAATT H T Q I H N S Y T I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 37838 37551 AGS-1 (37838 37551) SCR (e 0.852) Exon 1 37838 37551 ( 288 n); score: 0.852 PGS (37838 37551) SGN-U342371+ 3-phase translation of AGS-1 (-strand): . . . . . . 37838 AAGACTTTAACATGGAGGCCAATATGCAAGACAACAAAAGAGTTCTTACTCCTATGTCCG K T L T W R P I C K T T K E F L L L C P R L - H G G Q Y A R Q Q K S S Y S Y V R D F N M E A N M Q D N K R V L T P M S . . . . . . 37778 TCTCTAATGTTCTGAGTGTAGACCAAGTTGATCTTATTGCTCATAGATCTTTCTTATGGA S L M F - V - T K L I L L L I D L S Y G L - C S E C R P S - S Y C S - I F L M D V S N V L S V D Q V D L I A H R S F L W . . . . . . 37718 CAATTGTGACAAGCTACAATATTTGTCCTTCACCATACCTTACATTGCGTTTGCGAAGAG Q L - Q A T I F V L H H T L H C V C E E N C D K L Q Y L S F T I P Y I A F A K S T I V T S Y N I C P S P Y L T L R L R R . . . . . . 37658 TGAAGTGACGTGGACAGAATTCCTTTCCAAAAGTTAAGTTTGTCCCCATTTCACTATTTT - S D V D R I P F Q K L S L S P F H Y F E V T W T E F L S K S - V C P H F T I L V K - R G Q N S F P K V K F V P I S L F . . . . . 37598 GAACCTTGAGAGCTCGGTAGAGGCGATTTTAAAGAGGTTCTTTGAGAT E P - E L G R G D F K E V L - D N L E S S V E A I L K R F F E - T L R A R - R R F - R G S L R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 37551 ATCTCAAAGAACCTCTTTAAAATCGCCTCTACCGAGCTCTCAAGGTTCAAAATAGTGAAA I S K N L F K I A S T E L S R F K I V K S Q R T S L K S P L P S S Q G S K - - N L K E P L - N R L Y R A L K V Q N S E . . . . . . 37611 TGGGGACAAACTTAACTTTTGGAAAGGAATTCTGTCCACGTCACTTCACTCTTCGCAAAC W G Q T - L L E R N S V H V T S L F A N G D K L N F W K G I L S T S L H S S Q T M G T N L T F G K E F C P R H F T L R K . . . . . . 37671 GCAATGTAAGGTATGGTGAAGGACAAATATTGTAGCTTGTCACAATTGTCCATAAGAAAG A M - G M V K D K Y C S L S Q L S I R K Q C K V W - R T N I V A C H N C P - E R R N V R Y G E G Q I L - L V T I V H K K . . . . . . 37731 ATCTATGAGCAATAAGATCAACTTGGTCTACACTCAGAACATTAGAGACGGACATAGGAG I Y E Q - D Q L G L H S E H - R R T - E S M S N K I N L V Y T Q N I R D G H R S D L - A I R S T W S T L R T L E T D I G . . . . . 37791 TAAGAACTCTTTTGTTGTCTTGCATATTGGCCTCCATGTTAAAGTCTT - E L F C C L A Y W P P C - S L K N S F V V L H I G L H V K V V R T L L L S C I L A S M L K S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 63151 50635 AGS-1 (63151 63003,62398 62334,62240 62165,61916 61716,61317 61223,54250 54145,54060 54014,53826 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50635) SCR (e 1.000 d 1.000 a 0.996,e 1.000 d 0.724 a 0.992,e 1.000 d 0.989 a 0.974,e 1.000 d 0.959 a 0.998,e 1.000 d 0.472 a 0.842,e 1.000 d 0.794 a 0.999,e 1.000 d 0.934 a 0.943,e 0.992 d 0.674 a 0.998,e 1.000 d 0.888 a 0.987,e 1.000 d 0.911 a 0.956,e 1.000 d 0.977 a 0.964,e 1.000 d 0.582 a 1.000,e 1.000 d 0.917 a 0.876,e 1.000) Exon 1 63151 63003 ( 149 n); score: 1.000 Intron 1 63002 62399 ( 604 n); Pd: 1.000 Pa: 0.996 Exon 2 62398 62334 ( 65 n); score: 1.000 Intron 2 62333 62241 ( 93 n); Pd: 0.724 Pa: 0.992 Exon 3 62240 62165 ( 76 n); score: 1.000 Intron 3 62164 61917 ( 248 n); Pd: 0.989 Pa: 0.974 Exon 4 61916 61716 ( 201 n); score: 1.000 Intron 4 61715 61318 ( 398 n); Pd: 0.959 Pa: 0.998 Exon 5 61317 61223 ( 95 n); score: 1.000 Intron 5 61222 54251 (6972 n); Pd: 0.472 Pa: 0.842 Exon 6 54250 54145 ( 106 n); score: 1.000 Intron 6 54144 54061 ( 84 n); Pd: 0.794 Pa: 0.999 Exon 7 54060 54014 ( 47 n); score: 1.000 Intron 7 54013 53827 ( 187 n); Pd: 0.934 Pa: 0.943 Exon 8 53826 53499 ( 328 n); score: 0.992 Intron 8 53498 53341 ( 158 n); Pd: 0.674 Pa: 0.998 Exon 9 53340 53251 ( 90 n); score: 1.000 Intron 9 53250 53151 ( 100 n); Pd: 0.888 Pa: 0.987 Exon 10 53150 53088 ( 63 n); score: 1.000 Intron 10 53087 52595 ( 493 n); Pd: 0.911 Pa: 0.956 Exon 11 52594 52520 ( 75 n); score: 1.000 Intron 11 52519 51782 ( 738 n); Pd: 0.977 Pa: 0.964 Exon 12 51781 51719 ( 63 n); score: 1.000 Intron 12 51718 51505 ( 214 n); Pd: 0.582 Pa: 1.000 Exon 13 51504 51452 ( 53 n); score: 1.000 Intron 13 51451 51031 ( 421 n); Pd: 0.917 Pa: 0.876 Exon 14 51030 50635 ( 396 n); score: 1.000 PGS (53581 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50635) SGN-U322730+ PGS (53578 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50742) SGN-U337675+ PGS (63151 63003,62398 62334,62240 62165,61916 61716,61317 61223,54250 54145,54060 54014,53826 53575) SGN-U323817+ 3-phase translation of AGS-1 (-strand): . . . . . . 63151 TTCTTCCTTAAATCGCCGGAAAATCTCTCCCCGGGGCAATGAGGCGGCCAGCGACCATGA F F L K S P E N L S P G Q - G G Q R P - S S L N R R K I S P R G N E A A S D H E L P - I A G K S L P G A M R R P A T M . . . . . . 63091 ATATCGACGCCATGGCGCGGAAAGTCGACGTCGACAATCGAATTCCTCTTCGCAATTACT I S T P W R G K S T S T I E F L F A I T Y R R H G A E S R R R Q S N S S S Q L L N I D A M A R K V D V D N R I P L R N Y . . . : . . . 63031 ACAGGATCGCCAATAATCTCCTCCGACAG : GCTAGTATTCATCGTGGAGAGAAGAATATCA T G S P I I S S D R : L V F I V E R R I S Q D R Q - S P P T : G - Y S S W R E E Y H Y R I A N N L L R Q : A S I H R G E K N I . . . . : . . 62367 TAGACTTGTATATAATACTTCTGAGATATTCAAG : TTTGGTTACTGAAACAATACCCTCTC - T C I - Y F - D I Q : V W L L K Q Y P L R L V Y N T S E I F K : F G Y - N N T L S I D L Y I I L L R Y S S : L V T E T I P S . . . . . : . 62214 ATCGAGATTACCAGGCTTTGCATCCTAAAGAAAGAGCATTATCCAAAAAG : ATGCTGTTAA I E I T R L C I L K K E H Y P K R : C C - S R L P G F A S - R K S I I Q K : D A V N H R D Y Q A L H P K E R A L S K K : M L L . . . . . . 61906 CTGTGCTAGATGAACTAGAGGGTTTAAAACCTGAATTCCAGCGCCAGTTTCAAGCAATCG L C - M N - R V - N L N S S A S F K Q S C A R - T R G F K T - I P A P V S S N R T V L D E L E G L K P E F Q R Q F Q A I . . . . . . 61846 GTGAAGTTCAAGTAACAGCTCAGCCTTACCAAGTCAATAATTTGGAGAACCATCGATATA V K F K - Q L S L T K S I I W R T I D I - S S S N S S A L P S Q - F G E P S I - G E V Q V T A Q P Y Q V N N L E N H R Y . . . . . . 61786 GACCAGTTGGGAATTCTTTTGGACAACCTTCTACCAGCAATAAAGCATCTTCATATTATG D Q L G I L L D N L L P A I K H L H I M T S W E F F W T T F Y Q Q - S I F I L - R P V G N S F G Q P S T S N K A S S Y Y . . : . . . . 61726 ATAATCAATGG : GCCATAACAAATGCACCTTCATCTACATGGAAACAGAACAATGAATATT I I N G : P - Q M H L H L H G N R T M N I - S M : G H N K C T F I Y M E T E Q - I F D N Q W : A I T N A P S S T W K Q N N E Y . . . . . : . 61268 CTCATATTTCATCCCCAAGTTCATTTGACAAGCAATTCCAGAAGCT : ATCTTTCAATTTTT L I F H P Q V H L T S N S R S : Y L S I F S Y F I P K F I - Q A I P E A : I F Q F F S H I S S P S S F D K Q F Q K L : S F N F . . . . . . 54236 CTGTTCCAAAGCAAGAAACGTTATCAAGGCACTCTTTTTTTGGCCCCAATGGTCTTCGTG L F Q S K K R Y Q G T L F L A P M V F V C S K A R N V I K A L F F W P Q W S S W S V P K Q E T L S R H S F F G P N G L R . . . . : . . 54176 GTCAATGGCCAGGACCTAGTTCTGAGATAAAG : GTTAATTACCCAGTACATGATGATCTAG V N G Q D L V L R - R : L I T Q Y M M I - S M A R T - F - D K : G - L P S T - - S S G Q W P G P S S E I K : V N Y P V H D D L . . : . . . . 54032 CTCCAAATGAGATTTGGAG : CCTTAATCCAGTTGAAGATAGACCTTTGGTGTCCAAGGACA L Q M R F G : A L I Q L K I D L W C P R T S K - D L E : P - S S - R - T F G V Q G H A P N E I W S : L N P V E D R P L V S K D . . . . . . 53785 CTAGCTTGATAGTGGATAAGTCTTCTATGGAATCGGTTCTTTCTTTGGATGATGGGCGAT L A - - W I S L L W N R F F L W M M G D - L D S G - V F Y G I G S F F G - W A M T S L I V D K S S M E S V L S L D D G R . . . . . . 53725 GGTTACATCCTACTGAGGATTCCAATTTTCAATTTCTTGACGATGTGCGGAGTGATAACA G Y I L L R I P I F N F L T M C G V I T V T S Y - G F Q F S I S - R C A E - - H W L H P T E D S N F Q F L D D V R S D N . . . . . . 53665 TTCCTTTGAGTAACTTAAGGCAACCTTCGCCTCCTCCAGTTTTGGCACAACTACAACAGG F L - V T - G N L R L L Q F W H N Y N R S F E - L K A T F A S S S F G T T T T G I P L S N L R Q P S P P P V L A Q L Q Q . . . . . . 53605 AGTTTCGTCCTATATCTCCGTCCAAAGTTGCAGATCCAAGACCTGGGCCCGCTAAGTGCA S F V L Y L R P K L Q I Q D L G P L S A V S S Y I S V Q S C R S K T W A R - V H E F R P I S P S K V A D P R P G P A K C . . . . . : . 53545 TTCAGGATGTACCGTCTAGTTCAAATTCTTTTCAACATTTGCATGTT : CCAGTGAGACTGA F R M Y R L V Q I L F N I C M F : Q - D - S G C T V - F K F F S T F A C : S S E T D I Q D V P S S S N S F Q H L H V : P V R L . . . . . . 53327 TGGAAGATTTCTTGAGGTTAGCTCGAGAAAATACAAAAAAGAATTTAGAAACTTGTGGAG W K I S - G - L E K I Q K R I - K L V E G R F L E V S S R K Y K K E F R N L W S M E D F L R L A R E N T K K N L E T C G . . : . . . . 53267 TTCTTGCTGGTTCACTG : AAAAACCGTGTTTTTCACATCACTACTCTTATAGTTCCAAAGC F L L V H - : K T V F F T S L L L - F Q S S C W F T : E K P C F S H H Y S Y S S K A V L A G S L : K N R V F H I T T L I V P K . . : . . . . 53107 AGGAGTCAACTTCAGATTCA : TGCCAGACATTAAATGAAGAGGAGATTTTTGATGTTCAAG R S Q L Q I H : A R H - M K R R F L M F K G V N F R F : M P D I K - R G D F - C S R Q E S T S D S : C Q T L N E E E I F D V Q . . . . : . . 52554 ACAAGCGCTCTCTCTTTCCTCTTGGTTGGATCCAT : ACACATCCATCACAAACATGTTTTA T S A L S F L L V G S I : H I H H K H V L Q A L S L S S W L D P : Y T S I T N M F Y D K R S L F P L G W I H : T H P S Q T C F . . . . : . . 51756 TGTCATCAGTTGATCTGCATACTCATTATTCTTATCAG : ATTATGTTGCCGGAAGCAATTG C H Q L I C I L I I L I R : L C C R K Q L V I S - S A Y S L F L S : D Y V A G S N C M S S V D L H T H Y S Y Q : I M L P E A I . . . . : . . 51482 CAATTGTGATGGCTCCTACAGACACAGCCAG : CCCTCATGGCATATTCCACTTGTCTGATC Q L - W L L Q T Q P : A L M A Y S T C L I N C D G S Y R H S Q : P S W H I P L V - S A I V M A P T D T A S : P H G I F H L S D . . . . . . 51001 CTGCTGGTGTATCTGTTATTCGGAAATGTCAACAACGTGGTTTTCATCCTCACGAGGAGC L L V Y L L F G N V N N V V F I L T R S C W C I C Y S E M S T T W F S S S R G A P A G V S V I R K C Q Q R G F H P H E E . . . . . . 50941 CCGAGGATGGAAGTCCAATATATGAACACTGTTCTCATGTCTACATGAATGCAAACATGA P R M E V Q Y M N T V L M S T - M Q T - R G W K S N I - T L F S C L H E C K H E P E D G S P I Y E H C S H V Y M N A N M . . . . . . 50881 AGTTTGATATTGTTGACCTTCGGTAAGCTCACAGTTTATAAAAACCTTGGAAAGTGCGCA S L I L L T F G K L T V Y K N L G K C A V - Y C - P S V S S Q F I K T L E S A H K F D I V D L R - A H S L - K P W K V R . . . . . . 50821 TTTAGGAGTTTCAATGATGGTTGTATAGTATTATATCTTGGACGTTAAGGTATACTGCAC F R S F N D G C I V L Y L G R - G I L H L G V S M M V V - Y Y I L D V K V Y C T I - E F Q - W L Y S I I S W T L R Y T A . . . . . . 50761 TTTTATGTACATTCTCAGGGATCTGAGAATACAGTTTATTTGAAATGAGCGATTGTGTAT F Y V H S Q G S E N T V Y L K - A I V Y F M Y I L R D L R I Q F I - N E R L C I L L C T F S G I - E Y S L F E M S D C V . . . . . . 50701 TTCCCTTGTTTTCTTTTCTAGTCCAATAATATTTATGTTGTACATCAAATGAAAACTTTT F P C F L F - S N N I Y V V H Q M K T F S L V F F S S P I I F M L Y I K - K L L F P L F S F L V Q - Y L C C T S N E N F . 50641 GGTTGTC G C V V W L Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-4_AGS-1_PPS_1 (63140 63003,62398 62334,62240 62165,61916 61716,61317 61223,54250 54145,54060 54014,53826 53499,53340 53251,53150 53088,52594 52520,51781 51719,51504 51452,51030 50856) (frame '0'; 1572 bp, 524 residues) 1 IAGKSLPGAM RRPATMNIDA MARKVDVDNR IPLRNYYRIA NNLLRQASIH RGEKNIIDLY 61 IILLRYSSLV TETIPSHRDY QALHPKERAL SKKMLLTVLD ELEGLKPEFQ RQFQAIGEVQ 121 VTAQPYQVNN LENHRYRPVG NSFGQPSTSN KASSYYDNQW AITNAPSSTW KQNNEYSHIS 181 SPSSFDKQFQ KLSFNFSVPK QETLSRHSFF GPNGLRGQWP GPSSEIKVNY PVHDDLAPNE 241 IWSLNPVEDR PLVSKDTSLI VDKSSMESVL SLDDGRWLHP TEDSNFQFLD DVRSDNIPLS 301 NLRQPSPPPV LAQLQQEFRP ISPSKVADPR PGPAKCIQDV PSSSNSFQHL HVPVRLMEDF 361 LRLARENTKK NLETCGVLAG SLKNRVFHIT TLIVPKQEST SDSCQTLNEE EIFDVQDKRS 421 LFPLGWIHTH PSQTCFMSSV DLHTHYSYQI MLPEAIAIVM APTDTASPHG IFHLSDPAGV 481 SVIRKCQQRG FHPHEEPEDG SPIYEHCSHV YMNANMKFDI VDLR- AGS-2 (57338 56422) SCR (e 0.869) Exon 1 57338 56422 ( 917 n); score: 0.869 PGS (57338 56422) SGN-U325076- PGS (57243 56440) SGN-U338143+ 3-phase translation of AGS-2 (-strand): . . . . . . 57338 CTGTGCCTCACAAAAAGTATAAAACACCACAAATATCTTCTGTTTCAGCTAATAGTTTTT L C L T K S I K H H K Y L L F Q L I V F C A S Q K V - N T T N I F C F S - - F L V P H K K Y K T P Q I S S V S A N S F . . . . . . 57278 GCTCACACCAAAAATAAAAAAGGCCTAAACAATTCATTCTGAATGTTGTTCTGAGTCCCC A H T K N K K G L N N S F - M L F - V P L T P K I K K A - T I H S E C C S E S P C S H Q K - K R P K Q F I L N V V L S P . . . . . . 57218 TCAAAGCACCTTTTGTTCCTCTCAATCCAAATTGACCACCAAATGCATGCTGGGACGATC S K H L L F L S I Q I D H Q M H A G T I Q S T F C S S Q S K L T T K C M L G R S L K A P F V P L N P N - P P N A C W D D . . . . . . 57158 TTCCATTTTTCTTCCTTCTTGCTCACATTACCATCCATATTCCAGCATCTAAGAACGTCT F H F S S F L L T L P S I F Q H L R T S S I F L P S C S H Y H P Y S S I - E R L L P F F F L L A H I T I H I P A S K N V . . . . . . 57098 GCTATGCTTCCAGGTTTCACCCAACTAATCCCTTTCAAACTGATGAACATCCTCCAAAGT A M L P G F T Q L I P F K L M N I L Q S L C F Q V S P N - S L S N - - T S S K V C Y A S R F H P T N P F Q T D E H P P K . . . . . . 57038 TGGTCTGTCCATTTGCAATGCAAAAAAATATGGTTGATTGTCTCAGCTTGTTCCCCACAG W S V H L Q C K K I W L I V S A C S P Q G L S I C N A K K Y G - L S Q L V P H R L V C P F A M Q K N M V D C L S L F P T . . . . . . 56978 AAAAAACGCCCGGCGATTAGTTGGTCACCCCTTTTGTTCAGATTATCATGAGTTAACACT K K R P A I S W S P L L F R L S - V N T K N A R R L V G H P F C S D Y H E L T L E K T P G D - L V T P F V Q I I M S - H . . . . . . 56918 GTTTCTTTGGCCAAAAGCCAGATGAAACAGTTAACTTTGTAGTGAATTTTTGTTTTGCAT V S L A K S Q M K Q L T L - - I F V L H F L W P K A R - N S - L C S E F L F C I C F F G Q K P D E T V N F V V N F C F A . . . . . . 56858 ATCTTCCAAGGCCAATCTCTTTCCTTCACCACTCCTACATTTAGCATGCAGATTCGATGG I F Q G Q S L S F T T P T F S M Q I R W S S K A N L F P S P L L H L A C R F D G Y L P R P I S F L H H S Y I - H A D S M . . . . . . 56798 AATTTTTTTTTACTGTTTCTATTCCATTCTAGTCTGTCCACTTCTTCAGTTAAATTGTTG N F F L L F L F H S S L S T S S V K L L I F F Y C F Y S I L V C P L L Q L N C - E F F F T V S I P F - S V H F F S - I V . . . . . . 56738 AATCTTGCTACTAAGTTATAGAATTCTGTTATCCTCCTGATCTCCCAATCATTCAAATAT N L A T K L - N S V I L L I S Q S F K Y I L L L S Y R I L L S S - S P N H S N I E S C Y - V I E F C Y P P D L P I I Q I . . . . . . 56678 CTCCTTCGATATAGATTCCATCCTTGTCCAGTCCACATCATGGCAACTGGGGCTTGTTGT L L R Y R F H P C P V H I M A T G A C C S F D I D S I L V Q S T S W Q L G L V V S P S I - I P S L S S P H H G N W G L L . . . . . . 56618 TGCTGGCTTAGAGTGTATAGCTCCGGATGTTGTTGTTTCCTTGTTAAAAGTGCTGCCCAC C W L R V Y S S G C C C F L V K S A A H A G L E C I A P D V V V S L L K V L P T L L A - S V - L R M L L F P C - K C C P . . . . . . 56558 TTGTCATGCCAAAAAGAGGTTTTCTGCCCATTTCCTATCCTCACCTTAGTTCTGATCTGC L S C Q K E V F C P F P I L T L V L I C C H A K K R F S A H F L S S P - F - S A L V M P K R G F L P I S Y P H L S S D L . . . . . . 56498 ATCATTGGCCAATGATTCCTAATAGCTCTCCAGTCTGAACATCCATAGGGTGTTGTGACA I I G Q - F L I A L Q S E H P - G V V T S L A N D S - - L S S L N I H R V L - H H H W P M I P N S S P V - T S I G C C D . . 56438 TTCTTAGTCATCCAATT F L V I Q S - S S N I L S H P I Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-4_AGS-2_PPS_1 (57224 56928) (frame '1'; 294 bp, 98 residues) 1 VPSKHLLFLS IQIDHQMHAG TIFHFSSFLL TLPSIFQHLR TSAMLPGFTQ LIPFKLMNIL 61 QSWSVHLQCK KIWLIVSACS PQKKRPAISW SPLLFRLS- >C01HBa0216G16.1-_PGL-4_AGS-2_PPS_2 (56717 56484) (frame '1'; 231 bp, 77 residues) 1 NSVILLISQS FKYLLRYRFH PCPVHIMATG ACCCWLRVYS SGCCCFLVKS AAHLSCQKEV 61 FCPFPILTLV LICIIGQ- 3-phase translation of AGS-2 (+strand): . . . . . . 56422 AATTGGATGACTAAGAATGTCACAACACCCTATGGATGTTCAGACTGGAGAGCTATTAGG N W M T K N V T T P Y G C S D W R A I R I G - L R M S Q H P M D V Q T G E L L G L D D - E C H N T L W M F R L E S Y - . . . . . . 56482 AATCATTGGCCAATGATGCAGATCAGAACTAAGGTGAGGATAGGAAATGGGCAGAAAACC N H W P M M Q I R T K V R I G N G Q K T I I G Q - C R S E L R - G - E M G R K P E S L A N D A D Q N - G E D R K W A E N . . . . . . 56542 TCTTTTTGGCATGACAAGTGGGCAGCACTTTTAACAAGGAAACAACAACATCCGGAGCTA S F W H D K W A A L L T R K Q Q H P E L L F G M T S G Q H F - Q G N N N I R S Y L F L A - Q V G S T F N K E T T T S G A . . . . . . 56602 TACACTCTAAGCCAGCAACAACAAGCCCCAGTTGCCATGATGTGGACTGGACAAGGATGG Y T L S Q Q Q Q A P V A M M W T G Q G W T L - A S N N K P Q L P - C G L D K D G I H S K P A T T S P S C H D V D W T R M . . . . . . 56662 AATCTATATCGAAGGAGATATTTGAATGATTGGGAGATCAGGAGGATAACAGAATTCTAT N L Y R R R Y L N D W E I R R I T E F Y I Y I E G D I - M I G R S G G - Q N S I E S I S K E I F E - L G D Q E D N R I L . . . . . . 56722 AACTTAGTAGCAAGATTCAACAATTTAACTGAAGAAGTGGACAGACTAGAATGGAATAGA N L V A R F N N L T E E V D R L E W N R T - - Q D S T I - L K K W T D - N G I E - L S S K I Q Q F N - R S G Q T R M E - . . . . . . 56782 AACAGTAAAAAAAAATTCCATCGAATCTGCATGCTAAATGTAGGAGTGGTGAAGGAAAGA N S K K K F H R I C M L N V G V V K E R T V K K N S I E S A C - M - E W - R K E K Q - K K I P S N L H A K C R S G E G K . . . . . . 56842 GATTGGCCTTGGAAGATATGCAAAACAAAAATTCACTACAAAGTTAACTGTTTCATCTGG D W P W K I C K T K I H Y K V N C F I W I G L G R Y A K Q K F T T K L T V S S G R L A L E D M Q N K N S L Q S - L F H L . . . . . . 56902 CTTTTGGCCAAAGAAACAGTGTTAACTCATGATAATCTGAACAAAAGGGGTGACCAACTA L L A K E T V L T H D N L N K R G D Q L F W P K K Q C - L M I I - T K G V T N - A F G Q R N S V N S - - S E Q K G - P T . . . . . . 56962 ATCGCCGGGCGTTTTTTCTGTGGGGAACAAGCTGAGACAATCAACCATATTTTTTTGCAT I A G R F F C G E Q A E T I N H I F L H S P G V F S V G N K L R Q S T I F F C I N R R A F F L W G T S - D N Q P Y F F A . . . . . . 57022 TGCAAATGGACAGACCAACTTTGGAGGATGTTCATCAGTTTGAAAGGGATTAGTTGGGTG C K W T D Q L W R M F I S L K G I S W V A N G Q T N F G G C S S V - K G L V G - L Q M D R P T L E D V H Q F E R D - L G . . . . . . 57082 AAACCTGGAAGCATAGCAGACGTTCTTAGATGCTGGAATATGGATGGTAATGTGAGCAAG K P G S I A D V L R C W N M D G N V S K N L E A - Q T F L D A G I W M V M - A R E T W K H S R R S - M L E Y G W - C E Q . . . . . . 57142 AAGGAAGAAAAATGGAAGATCGTCCCAGCATGCATTTGGTGGTCAATTTGGATTGAGAGG K E E K W K I V P A C I W W S I W I E R R K K N G R S S Q H A F G G Q F G L R G E G R K M E D R P S M H L V V N L D - E . . . . . . 57202 AACAAAAGGTGCTTTGAGGGGACTCAGAACAACATTCAGAATGAATTGTTTAGGCCTTTT N K R C F E G T Q N N I Q N E L F R P F T K G A L R G L R T T F R M N C L G L F E Q K V L - G D S E Q H S E - I V - A F . . . . . . 57262 TTATTTTTGGTGTGAGCAAAAACTATTAGCTGAAACAGAAGATATTTGTGGTGTTTTATA L F L V - A K T I S - N R R Y L W C F I Y F W C E Q K L L A E T E D I C G V L Y F I F G V S K N Y - L K Q K I F V V F Y . . 57322 CTTTTTGTGAGGCACAG L F V R H F L - G T T F C E A Q Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-4_AGS-2_PPS_1 (56422 57276) (frame '1'; 852 bp, 284 residues) 1 NWMTKNVTTP YGCSDWRAIR NHWPMMQIRT KVRIGNGQKT SFWHDKWAAL LTRKQQHPEL 61 YTLSQQQQAP VAMMWTGQGW NLYRRRYLND WEIRRITEFY NLVARFNNLT EEVDRLEWNR 121 NSKKKFHRIC MLNVGVVKER DWPWKICKTK IHYKVNCFIW LLAKETVLTH DNLNKRGDQL 181 IAGRFFCGEQ AETINHIFLH CKWTDQLWRM FISLKGISWV KPGSIADVLR CWNMDGNVSK 241 KEEKWKIVPA CIWWSIWIER NKRCFEGTQN NIQNELFRPF LFLV- PGL 5 (+ strand): 70474 70989 AGS-1 (70474 70989) SCR (e 1.000) Exon 1 70474 70989 ( 516 n); score: 1.000 PGS (70474 70989) SGN-U330196- 3-phase translation of AGS-1 (+strand): . . . . . . 70474 TCAACAATTCATCTTGAAGTATTCACATTAGTGAAATATTACATTTGACAGAACATACTG S T I H L E V F T L V K Y Y I - Q N I L Q Q F I L K Y S H - - N I T F D R T Y - N N S S - S I H I S E I L H L T E H T . . . . . . 70534 AATTTGCTAATACATGTTAGTAATTCACACTAAAACAATTTTCCAAGAGAAACATGCTAT N L L I H V S N S H - N N F P R E T C Y I C - Y M L V I H T K T I F Q E K H A I E F A N T C - - F T L K Q F S K R N M L . . . . . . 70594 TGTTCCTCATACAAGCATTTAGTAACAGAAATACATTGATACAGGGGCTTGTGTCTTGAT C S S Y K H L V T E I H - Y R G L C L D V P H T S I - - Q K Y I D T G A C V L M L F L I Q A F S N R N T L I Q G L V S - . . . . . . 70654 GATTAGTGATTACTTAGCTAGGAGGGCTTCTGGAAATATCGAAATATGGCAAAGACCAAT D - - L L S - E G F W K Y R N M A K T N I S D Y L A R R A S G N I E I W Q R P I - L V I T - L G G L L E I S K Y G K D Q . . . . . . 70714 CTCAGATTCCAAATAAAATGTTAAAAAGGGACAGCATCACTTCCTCGTAATCCTTCCTTT L R F Q I K C - K G T A S L P R N P S F S D S K - N V K K G Q H H F L V I L P F S Q I P N K M L K R D S I T S S - S F L . . . . . . 70774 TGCGAATCTGCTAGGCTAAGTACTCAGTAGTGGTTGGACTTGTCATTACACATTACTCCT C E S A R L S T Q - W L D L S L H I T P A N L L G - V L S S G W T C H Y T L L L L R I C - A K Y S V V V G L V I T H Y S . . . . . . 70834 TTTAACCCCAAAAGAATAACCACCCCAGCCTCAACGGGCCAACTTAGAACAGAACATCGA F N P K R I T T P A S T G Q L R T E H R L T P K E - P P Q P Q R A N L E Q N I D F - P Q K N N H P S L N G P T - N R T S . . . . . . 70894 CACTTTTTTTTTAATCATGCATGCTGAGATAAAAGTTCTCAACCAACACAGACAATCAGA H F F F N H A C - D K S S Q P T Q T I R T F F L I M H A E I K V L N Q H R Q S D T L F F - S C M L R - K F S T N T D N Q . . . . 70954 TATCTCCATATCCTACATTACGAGGGCCTTAAGGCA Y L H I L H Y E G L K A I S I S Y I T R A L R I S P Y P T L R G P - G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 70989 TGCCTTAAGGCCCTCGTAATGTAGGATATGGAGATATCTGATTGTCTGTGTTGGTTGAGA C L K A L V M - D M E I S D C L C W L R A L R P S - C R I W R Y L I V C V G - E P - G P R N V G Y G D I - L S V L V E . . . . . . 70929 ACTTTTATCTCAGCATGCATGATTAAAAAAAAAGTGTCGATGTTCTGTTCTAAGTTGGCC T F I S A C M I K K K V S M F C S K L A L L S Q H A - L K K K C R C S V L S W P N F Y L S M H D - K K S V D V L F - V G . . . . . . 70869 CGTTGAGGCTGGGGTGGTTATTCTTTTGGGGTTAAAAGGAGTAATGTGTAATGACAAGTC R - G W G G Y S F G V K R S N V - - Q V V E A G V V I L L G L K G V M C N D K S P L R L G W L F F W G - K E - C V M T S . . . . . . 70809 CAACCACTACTGAGTACTTAGCCTAGCAGATTCGCAAAAGGAAGGATTACGAGGAAGTGA Q P L L S T - P S R F A K G R I T R K - N H Y - V L S L A D S Q K E G L R G S D P T T T E Y L A - Q I R K R K D Y E E V . . . . . . 70749 TGCTGTCCCTTTTTAACATTTTATTTGGAATCTGAGATTGGTCTTTGCCATATTTCGATA C C P F L T F Y L E S E I G L C H I S I A V P F - H F I W N L R L V F A I F R Y M L S L F N I L F G I - D W S L P Y F D . . . . . . 70689 TTTCCAGAAGCCCTCCTAGCTAAGTAATCACTAATCATCAAGACACAAGCCCCTGTATCA F P E A L L A K - S L I I K T Q A P V S F Q K P S - L S N H - S S R H K P L Y Q I S R S P P S - V I T N H Q D T S P C I . . . . . . 70629 ATGTATTTCTGTTACTAAATGCTTGTATGAGGAACAATAGCATGTTTCTCTTGGAAAATT M Y F C Y - M L V - G T I A C F S W K I C I S V T K C L Y E E Q - H V S L G K L N V F L L L N A C M R N N S M F L L E N . . . . . . 70569 GTTTTAGTGTGAATTACTAACATGTATTAGCAAATTCAGTATGTTCTGTCAAATGTAATA V L V - I T N M Y - Q I Q Y V L S N V I F - C E L L T C I S K F S M F C Q M - Y C F S V N Y - H V L A N S V C S V K C N . . . . 70509 TTTCACTAATGTGAATACTTCAAGATGAATTGTTGA F H - C E Y F K M N C - F T N V N T S R - I V I S L M - I L Q D E L L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 81045 81118 AGS-1 (81045 81118) SCR (e 1.000) Exon 1 81045 81118 ( 74 n); score: 1.000 PGS (81045 81118) SGN-U320874+ 3-phase translation of AGS-1 (+strand): . . . . . . 81045 CGGCAAAACTGGGATAAAGTTGAGCCAAAAGATCTCGATTCAAGATAAATTCATGAGGAA R Q N W D K V E P K D L D S R - I H E E G K T G I K L S Q K I S I Q D K F M R K A K L G - S - A K R S R F K I N S - G . . 81105 GTGGTATCTCTTTA V V S L W Y L F S G I S L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 81118 TAAAGAGATACCACTTCCTCATGAATTTATCTTGAATCGAGATCTTTTGGCTCAACTTTA - R D T T S S - I Y L E S R S F G S T L K E I P L P H E F I L N R D L L A Q L Y K R Y H F L M N L S - I E I F W L N F . . 81058 TCCCAGTTTTGCCG S Q F C P S F A I P V L P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 96604 95033 AGS-1 (96313 96244,95297 95033) SCR (e 0.714 d 0.983 a 0.866,e 0.804) Exon 1 96313 96244 ( 70 n); score: 0.714 Intron 1 96243 95298 ( 946 n); Pd: 0.983 Pa: 0.866 Exon 2 95297 95033 ( 265 n); score: 0.804 PGS (96313 96244,95297 95033) SGN-U324462- 3-phase translation of AGS-1 (-strand): . . . . . . 96313 ATTGCTTTGAGTTCAAAGTTCAATAAAATGGAAATGCTCAAATTTCGTAGTGAATTGTTC I A L S S K F N K M E M L K F R S E L F L L - V Q S S I K W K C S N F V V N C S C F E F K V Q - N G N A Q I S - - I V . : . . . . . 96253 ACTTATTGAG : GTTACTAGCGCAGACCTTTGTCATATCTCTTCTTTTCTAAGGCTTCTTGA T Y - : G Y - R R P L S Y L F F S K A S - L I E : V T S A D L C H I S S F L R L L E H L L R : L L A Q T F V I S L L F - G F L . . . . . . 95247 AGATTTATGGGGTAGATGTTTGTCATCTCAACAAACCTTCTTACTTCTGTTTATGATTTT R F M G - M F V I S T N L L T S V Y D F D L W G R C L S S Q Q T F L L L F M I L K I Y G V D V C H L N K P S Y F C L - F . . . . . . 95187 GTTCTACTCTAGAAACAATGTCATATGAGACTTACATTTTTCTTTTAATTCACTTGTAAT V L L - K Q C H M R L T F F F - F T C N F Y S R N N V I - D L H F S F N S L V I C S T L E T M S Y E T Y I F L L I H L - . . . . . . 95127 ACTTTAGAGTTTTGTACACGTGACAACCAGGTTTTGGGGGTATAACTTAAGTTGATAGTA T L E F C T R D N Q V L G V - L K L I V L - S F V H V T T R F W G Y N L S - - - Y F R V L Y T - Q P G F G G I T - V D S . . . . 95067 AATTTTCTATATTTTATTATAATAATTGAGTTTTA N F L Y F I I I I E F I F Y I L L - - L S F K F S I F Y Y N N - V L Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-7_AGS-1_PPS_1 (96303 96244,95297 95160) (frame '2'; 195 bp, 65 residues) 1 VQSSIKWKCS NFVVNCSLIE VTSADLCHIS SFLRLLEDLW GRCLSSQQTF LLLFMILFYS 61 RNNVI- AGS-2 (95873 95089) SCR (e 0.688) Exon 1 95873 95089 ( 785 n); score: 0.688 PGS (95873 95089) SGN-U337987- 3-phase translation of AGS-2 (-strand): . . . . . . 95873 TATCACGCGCTCCGAAGGATATTATATTTCGAGAGACGCGCGCACCAGAATGGTTACTTT Y H A L R R I L Y F E R R A H Q N G Y F I T R S E G Y Y I S R D A R T R M V T F S R A P K D I I F R E T R A P E W L L . . . . . . 95813 TATTGAGGGTCGAATCGCGCACGCGATAGATGCATGGACAGATATGTCCCCAATGGGTTC Y - G S N R A R D R C M D R Y V P N G F I E G R I A H A I D A W T D M S P M G S L L R V E S R T R - M H G Q I C P Q W V . . . . . . 95753 TGAACTGAGAAACAGCGGGTGTGTATCACTAGGTCAGACATGCACCATTATACTTAACAT - T E K Q R V C I T R S D M H H Y T - H E L R N S G C V S L G Q T C T I I L N I L N - E T A G V Y H - V R H A P L Y L T . . . . . . 95693 TGTGTTCCATTACATTGCACATAGTTATCATTAGTGAATTTGATATGTGTTTTGCGGATC C V P L H C T - L S L V N L I C V L R I V F H Y I A H S Y H - - I - Y V F C G S L C S I T L H I V I I S E F D M C F A D . . . . . . 95633 TTTTGAATGTCTTTCTTTGAGACTCGTGATTGATGAATACTGAGGTTGTTGTTGAGGATA F - M S F F E T R D - - I L R L L L R I F E C L S L R L V I D E Y - G C C - G Y L L N V F L - D S - L M N T E V V V E D . . . . . . 95573 TGTAATTTGTTGAAGTAGTATTGTTGAGGACATGTAATTTGTCAAAGTGGTGTTGTTGAG C N L L K - Y C - G H V I C Q S G V V E V I C - S S I V E D M - F V K V V L L R M - F V E V V L L R T C N L S K W C C - . . . . . . 95513 GATATGCAATTTTGTCTAAGTGTTGTTGTTGAGTTATGTTCTATGTAAACTGCGAGCTGT D M Q F C L S V V V E L C S M - T A S C I C N F V - V L L L S Y V L C K L R A V G Y A I L S K C C C - V M F Y V N C E L . . . . . . 95453 TAAGTTGGACTGATTTTTATGCAGGTCGTAATTGTAGAGGTTCAGTTAGAGTGGTAGGAG - V G L I F M Q V V I V E V Q L E W - E K L D - F L C R S - L - R F S - S G R S L S W T D F Y A G R N C R G S V R V V G . . . . . . 95393 TACCCTTATTTCATCCAATTTGCTTGTGTTTAGAGGTTTACTTATTAAGTACCGTGTGGT Y P Y F I Q F A C V - R F T Y - V P C G T L I S S N L L V F R G L L I K Y R V V V P L F H P I C L C L E V Y L L S T V W . . . . . . 95333 TTGGTAGTCACTACTTGCTTCTACAATTTTTTGTAGGTTACTAGCGCAGACCTTTGTCAT L V V T T C F Y N F L - V T S A D L C H W - S L L A S T I F C R L L A Q T F V I F G S H Y L L L Q F F V G Y - R R P L S . . . . . . 95273 ATCTCTTCTTTTCTAAGGCTTCTTGAAGATTTATGGGGTAGATGTTTGTCATCTCAACAA I S S F L R L L E D L W G R C L S S Q Q S L L F - G F L K I Y G V D V C H L N K Y L F F S K A S - R F M G - M F V I S T . . . . . . 95213 ACCTTCTTACTTCTGTTTATGATTTTGTTCTACTCTAGAAACAATGTCATATGAGACTTA T F L L L F M I L F Y S R N N V I - D L P S Y F C L - F C S T L E T M S Y E T Y N L L T S V Y D F V L L - K Q C H M R L . . . . . . 95153 CATTTTTCTTTTAATTCACTTGTAATACTTTAGAGTTTTGTACACGTGACAACCAGGTTT H F S F N S L V I L - S F V H V T T R F I F L L I H L - Y F R V L Y T - Q P G F T F F F - F T C N T L E F C T R D N Q V . 95093 TGGGG W G L G Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-7_AGS-2_PPS_1 (95872 95660) (frame '2'; 210 bp, 70 residues) 1 ITRSEGYYIS RDARTRMVTF IEGRIAHAID AWTDMSPMGS ELRNSGCVSL GQTCTIILNI 61 VFHYIAHSYH - 3-phase translation of AGS-2 (+strand): . . . . . . 95089 CCCCAAAACCTGGTTGTCACGTGTACAAAACTCTAAAGTATTACAAGTGAATTAAAAGAA P Q N L V V T C T K L - S I T S E L K E P K T W L S R V Q N S K V L Q V N - K K P K P G C H V Y K T L K Y Y K - I K R . . . . . . 95149 AAATGTAAGTCTCATATGACATTGTTTCTAGAGTAGAACAAAATCATAAACAGAAGTAAG K C K S H M T L F L E - N K I I N R S K N V S L I - H C F - S R T K S - T E V R K M - V S Y D I V S R V E Q N H K Q K - . . . . . . 95209 AAGGTTTGTTGAGATGACAAACATCTACCCCATAAATCTTCAAGAAGCCTTAGAAAAGAA K V C - D D K H L P H K S S R S L R K E R F V E M T N I Y P I N L Q E A L E K K E G L L R - Q T S T P - I F K K P - K R . . . . . . 95269 GAGATATGACAAAGGTCTGCGCTAGTAACCTACAAAAAATTGTAGAAGCAAGTAGTGACT E I - Q R S A L V T Y K K L - K Q V V T R Y D K G L R - - P T K N C R S K - - L R D M T K V C A S N L Q K I V E A S S D . . . . . . 95329 ACCAAACCACACGGTACTTAATAAGTAAACCTCTAAACACAAGCAAATTGGATGAAATAA T K P H G T - - V N L - T Q A N W M K - P N H T V L N K - T S K H K Q I G - N K Y Q T T R Y L I S K P L N T S K L D E I . . . . . . 95389 GGGTACTCCTACCACTCTAACTGAACCTCTACAATTACGACCTGCATAAAAATCAGTCCA G Y S Y H S N - T S T I T T C I K I S P G T P T T L T E P L Q L R P A - K S V Q R V L L P L - L N L Y N Y D L H K N Q S . . . . . . 95449 ACTTAACAGCTCGCAGTTTACATAGAACATAACTCAACAACAACACTTAGACAAAATTGC T - Q L A V Y I E H N S T T T L R Q N C L N S S Q F T - N I T Q Q Q H L D K I A N L T A R S L H R T - L N N N T - T K L . . . . . . 95509 ATATCCTCAACAACACCACTTTGACAAATTACATGTCCTCAACAATACTACTTCAACAAA I S S T T P L - Q I T C P Q Q Y Y F N K Y P Q Q H H F D K L H V L N N T T S T N H I L N N T T L T N Y M S S T I L L Q Q . . . . . . 95569 TTACATATCCTCAACAACAACCTCAGTATTCATCAATCACGAGTCTCAAAGAAAGACATT L H I L N N N L S I H Q S R V S K K D I Y I S S T T T S V F I N H E S Q R K T F I T Y P Q Q Q P Q Y S S I T S L K E R H . . . . . . 95629 CAAAAGATCCGCAAAACACATATCAAATTCACTAATGATAACTATGTGCAATGTAATGGA Q K I R K T H I K F T N D N Y V Q C N G K R S A K H I S N S L M I T M C N V M E S K D P Q N T Y Q I H - - - L C A M - W . . . . . . 95689 ACACAATGTTAAGTATAATGGTGCATGTCTGACCTAGTGATACACACCCGCTGTTTCTCA T Q C - V - W C M S D L V I H T R C F S H N V K Y N G A C L T - - Y T P A V S Q N T M L S I M V H V - P S D T H P L F L . . . . . . 95749 GTTCAGAACCCATTGGGGACATATCTGTCCATGCATCTATCGCGTGCGCGATTCGACCCT V Q N P L G T Y L S M H L S R A R F D P F R T H W G H I C P C I Y R V R D S T L S S E P I G D I S V H A S I A C A I R P . . . . . . 95809 CAATAAAAGTAACCATTCTGGTGCGCGCGTCTCTCGAAATATAATATCCTTCGGAGCGCG Q - K - P F W C A R L S K Y N I L R S A N K S N H S G A R V S R N I I S F G A R S I K V T I L V R A S L E I - Y P S E R . 95869 TGATA - D V I Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-7_AGS-2_PPS_1 (95474 95725) (frame '2'; 249 bp, 83 residues) 1 NITQQQHLDK IAYPQQHHFD KLHVLNNTTS TNYISSTTTS VFINHESQRK TFKRSAKHIS 61 NSLMITMCNV MEHNVKYNGA CLT- AGS-3 (96604 96115) SCR (e 0.728) Exon 1 96604 96115 ( 490 n); score: 0.728 PGS (96354 96115) SGN-U345625- PGS (96604 96179) SGN-U331132+ 3-phase translation of AGS-3 (-strand): . . . . . . 96604 TCGTTATTATTTTTATTATAACATGATAATTATAAGTTTTGATATAATGAGATTGGTAAT S L L F L L - H D N Y K F - Y N E I G N R Y Y F Y Y N M I I I S F D I M R L V I V I I F I I T - - L - V L I - - D W - . . . . . . 96544 CAAATATTAATTGTATTACATTATATGAAAATTATTAGGATGATATTACTTGGAGAAATT Q I L I V L H Y M K I I R M I L L G E I K Y - L Y Y I I - K L L G - Y Y L E K L S N I N C I T L Y E N Y - D D I T W R N . . . . . . 96484 GAAACTTAACCCTAGGATTGAAACATGGAAAATATGATAATTGAAATGTTAATTGGCATC E T - P - D - N M E N M I I E M L I G I K L N P R I E T W K I - - L K C - L A S - N L T L G L K H G K Y D N - N V N W H . . . . . . 96424 AGAATTAGGAGTTTGAATATAAATTCGGATAAGTTTTGGGTGTAAGCTAGACCTATGGTA R I R S L N I N S D K F W V - A R P M V E L G V - I - I R I S F G C K L D L W - Q N - E F E Y K F G - V L G V S - T Y G . . . . . . 96364 ATATGGGGTGTTGTTTTTTAAAAATCTTATTGTGATTATTAATGTGAATAGATTGCTTTG I W G V V F - K S Y C D Y - C E - I A L Y G V L F F K N L I V I I N V N R L L - N M G C C F L K I L L - L L M - I D C F . . . . . . 96304 AGTTCAAAGTTCAATAAAATGGAAATGCTCAAATTTCGTAGTGAATTGTTCACTTATTGA S S K F N K M E M L K F R S E L F T Y - V Q S S I K W K C S N F V V N C S L I E E F K V Q - N G N A Q I S - - I V H L L . . . . . . 96244 GGCAAGTGGATTTCTAAACTCTTGTTTAGTGTATGAAATGTGTGTATTTCCTTGTGGTAT G K W I S K L L F S V - N V C I S L W Y A S G F L N S C L V Y E M C V F P C G I R Q V D F - T L V - C M K C V Y F L V V . . . . . . 96184 ATGTTTAGGAGTGATGGGACTTGGTGATGGGTTGACTTGTCCACATTGATTAATTCTAAT M F R S D G T W - W V D L S T L I N S N C L G V M G L G D G L T C P H - L I L I Y V - E - W D L V M G - L V H I D - F - . 96124 AATAAAAAAA N K K I K K - - K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 96115 TTTTTTTATTATTAGAATTAATCAATGTGGACAAGTCAACCCATCACCAAGTCCCATCAC F F Y Y - N - S M W T S Q P I T K S H H F F I I R I N Q C G Q V N P S P S P I T F L L L E L I N V D K S T H H Q V P S . . . . . . 96175 TCCTAAACATATACCACAAGGAAATACACACATTTCATACACTAAACAAGAGTTTAGAAA S - T Y T T R K Y T H F I H - T R V - K P K H I P Q G N T H I S Y T K Q E F R N L L N I Y H K E I H T F H T L N K S L E . . . . . . 96235 TCCACTTGCCTCAATAAGTGAACAATTCACTACGAAATTTGAGCATTTCCATTTTATTGA S T C L N K - T I H Y E I - A F P F Y - P L A S I S E Q F T T K F E H F H F I E I H L P Q - V N N S L R N L S I S I L L . . . . . . 96295 ACTTTGAACTCAAAGCAATCTATTCACATTAATAATCACAATAAGATTTTTAAAAAACAA T L N S K Q S I H I N N H N K I F K K Q L - T Q S N L F T L I I T I R F L K N N N F E L K A I Y S H - - S Q - D F - K T . . . . . . 96355 CACCCCATATTACCATAGGTCTAGCTTACACCCAAAACTTATCCGAATTTATATTCAAAC H P I L P - V - L T P K T Y P N L Y S N T P Y Y H R S S L H P K L I R I Y I Q T T P H I T I G L A Y T Q N L S E F I F K . . . . . . 96415 TCCTAATTCTGATGCCAATTAACATTTCAATTATCATATTTTCCATGTTTCAATCCTAGG S - F - C Q L T F Q L S Y F P C F N P R P N S D A N - H F N Y H I F H V S I L G L L I L M P I N I S I I I F S M F Q S - . . . . . . 96475 GTTAAGTTTCAATTTCTCCAAGTAATATCATCCTAATAATTTTCATATAATGTAATACAA V K F Q F L Q V I S S - - F S Y N V I Q L S F N F S K - Y H P N N F H I M - Y N G - V S I S P S N I I L I I F I - C N T . . . . . . 96535 TTAATATTTGATTACCAATCTCATTATATCAAAACTTATAATTATCATGTTATAATAAAA L I F D Y Q S H Y I K T Y N Y H V I I K - Y L I T N L I I S K L I I I M L - - K I N I - L P I S L Y Q N L - L S C Y N K . 96595 ATAATAACGA I I T - - R N N N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 123539 118790 AGS-1 (123539 123390,123235 123095,122824 122781,122114 122022,119944 119937,119020 118998,118828 118790) SCR (e 0.840 d 0.994 a 0.000,e 0.741 d 0.000 a 0.000,e 0.636 d 0.000 a 0.000,e 0.645 d 0.000 a 0.000,e 0.875 d 0.702 a 0.000,e 0.717 d 0.738 a 0.000,e 0.744) Exon 1 123539 123390 ( 150 n); score: 0.840 Intron 1 123389 123236 ( 154 n); Pd: 0.994 Pa: 0.000 Exon 2 123235 123095 ( 141 n); score: 0.741 Intron 2 123094 122825 ( 270 n); Pd: 0.000 Pa: 0.000 Exon 3 122824 122781 ( 44 n); score: 0.636 Intron 3 122780 122115 ( 666 n); Pd: 0.000 Pa: 0.000 Exon 4 122114 122022 ( 93 n); score: 0.645 Intron 4 122021 119945 (2077 n); Pd: 0.000 Pa: 0.000 Exon 5 119944 119937 ( 8 n); score: 0.875 Intron 5 119936 119021 ( 916 n); Pd: 0.702 Pa: 0.000 Exon 6 119020 118998 ( 23 n); score: 0.717 Intron 6 118997 118829 ( 169 n); Pd: 0.738 Pa: 0.000 Exon 7 118828 118790 ( 39 n); score: 0.744 PGS (123539 123390,123235 123095,122824 122781,122114 122022,119944 119937,119020 118998,118828 118790) SGN-U315404- 3-phase translation of AGS-1 (-strand): . . . . . . 123539 GGGAAAATCGTATATAATAGCAAACTGATAACCTAAAATAAATGGAGTATCCAGGGTTTG G K I V Y N S K L I T - N K W S I Q G L G K S Y I I A N - - P K I N G V S R V - E N R I - - Q T D N L K - M E Y P G F . . . . . . 123479 ATTTATTTGTGCTCCATAGCAAACGTTTGCCAAAAATTGTCAGGCGCCTCTCTCCCGAAT I Y L C S I A N V C Q K L S G A S L P N F I C A P - Q T F A K N C Q A P L S R I D L F V L H S K R L P K I V R R L S P E . . . : . . . 123419 ATCTCGCTTGCCACTCTCCTCCAATCTCTC : TCGTCTTTCTCACTTATACAAACAGACACG I S L A T L L Q S L : S S F S L I Q T D T S R L P L S S N L S : R L S H L Y K Q T R Y L A C H S P P I S : L V F L T Y T N R H . . . . . . 123205 AAATGTATAAATTGCATTTATGTTTGTATAAAGCGTGAGAAAATTATACATACACATGCA K C I N C I Y V C I K R E K I I H T H A N V - I A F M F V - S V R K L Y I H M Q E M Y K L H L C L Y K A - E N Y T Y T C . . . . . . : 123145 AGTACATATATTTTCGTCCTATACACTTATAATTATACAATAAAAATACTT : TTTTATACA S T Y I F V L Y T Y N Y T I K I L : F Y T V H I F S S Y T L I I I Q - K Y F : F I Q K Y I Y F R P I H L - L Y N K N T : F L Y . . . . : . . 122815 ATTTGCTTCACAGTATATGTATAGCGAATTATACA : ATTGGAAATTATATATATATATATA I C F T V Y V - R I I Q : L E I I Y I Y I F A S Q Y M Y S E L Y : N W K L Y I Y I Y N L L H S I C I A N Y T : I G N Y I Y I Y . . . . . . 122089 TATATATATATATATATATATATATATATATAACAAGTAGTCATGTATCATGTATGTTCT Y I Y I Y I Y I Y I - Q V V M Y H V C S I Y I Y I Y I Y I Y N K - S C I M Y V L I Y I Y I Y I Y I Y I T S S H V S C M F . : . : . . : . . 122029 TTTATTAT : AAAGTGAG : ACAAAAACAAAAAATTCTTACCT : TATATATATATATTATAGTAA F I I : K - : D K N K K F L P : Y I Y I L - - L L : - S E : T K T K N S Y L : I Y I Y Y S N F Y Y : K V R : Q K Q K I L T : L Y I Y I I V . . 118807 TTTAACATTCATATTAAT F N I H I N L T F I L I - H S Y - Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-8_AGS-1_PPS_1 (123503 123390,123235 123095,122824 122792) (frame '1'; 285 bp, 95 residues) 1 NKWSIQGLIY LCSIANVCQK LSGASLPNIS LATLLQSLSS FSLIQTDTKC INCIYVCIKR 61 EKIIHTHAST YIFVLYTYNY TIKILFYTIC FTVYV- AGS-2 (122802 122691) SCR (e 0.911) Exon 1 122802 122691 ( 112 n); score: 0.911 PGS (122802 122691) SGN-U335137+ 3-phase translation of AGS-2 (-strand): . . . . . . 122802 TATATGTATAGCGAATTATACAGTTTCTATGTTTGCTAGGGAACGCAATTATGCAAACTT Y M Y S E L Y S F Y V C - G T Q L C K L I C I A N Y T V S M F A R E R N Y A N F Y V - R I I Q F L C L L G N A I M Q T . . . . . . 122742 TGTTATAGCATACAAATATGAATTTTTTATTTGATATATGTGAAAGTTGCCC C Y S I Q I - I F Y L I Y V K V A V I A Y K Y E F F I - Y M - K L P L L - H T N M N F L F D I C E S C Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 122691 GGGCAACTTTCACATATATCAAATAAAAAATTCATATTTGTATGCTATAACAAAGTTTGC G Q L S H I S N K K F I F V C Y N K V C G N F H I Y Q I K N S Y L Y A I T K F A A T F T Y I K - K I H I C M L - Q S L . . . . . . 122751 ATAATTGCGTTCCCTAGCAAACATAGAAACTGTATAATTCGCTATACATATA I I A F P S K H R N C I I R Y T Y - L R S L A N I E T V - F A I H I H N C V P - Q T - K L Y N S L Y I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (- strand): 131781 129218 AGS-1 (131781 131664,131531 131484,129977 129915,129837 129790,129642 129580,129442 129218) SCR (e 1.000 d 0.999 a 0.986,e 1.000 d 1.000 a 0.990,e 0.984 d 1.000 a 1.000,e 0.979 d 0.986 a 0.995,e 1.000 d 0.995 a 0.961,e 1.000) Exon 1 131781 131664 ( 118 n); score: 1.000 Intron 1 131663 131532 ( 132 n); Pd: 0.999 Pa: 0.986 Exon 2 131531 131484 ( 48 n); score: 1.000 Intron 2 131483 129978 (1506 n); Pd: 1.000 Pa: 0.990 Exon 3 129977 129915 ( 63 n); score: 0.984 Intron 3 129914 129838 ( 77 n); Pd: 1.000 Pa: 1.000 Exon 4 129837 129790 ( 48 n); score: 0.979 Intron 4 129789 129643 ( 147 n); Pd: 0.986 Pa: 0.995 Exon 5 129642 129580 ( 63 n); score: 1.000 Intron 5 129579 129443 ( 137 n); Pd: 0.995 Pa: 0.961 Exon 6 129442 129218 ( 225 n); score: 1.000 PGS (131781 131664,131531 131484,129977 129915,129837 129790,129642 129580,129442 129218) SGN-U343309+ 3-phase translation of AGS-1 (-strand): . . . . . . 131781 TATCCTTTTCTCTTAACTCTCACCTTCTTCTTTCCCACCGTTTCTTTCTCAGCTTAAATA Y P F L L T L T F F F P T V S F S A - I I L F S - L S P S S F P P F L S Q L K Y S F S L N S H L L L S H R F F L S L N . . . . . . : 131721 TTTCTCTTCTTTTCTTTTTCTCCCTTTGCTTGCTTCTCTTTATCTCCTCTCCTTCAAG : AT F L F F S F S P F A C F S L S P L L Q : D F S S F L F L P L L A S L Y L L S F K : M I S L L F F F S L C L L L F I S S P S R : . . . . . : . 131529 GGCAGATAACAACACCACAACTCAAGATTTTGATGGTTCCTCTCAG : ACTACTTCTACTGG G R - Q H H N S R F - W F L S : D Y F Y W A D N N T T T Q D F D G S S Q : T T S T G W Q I T T P Q L K I L M V P L R : L L L L . . . . . : . 129963 TAACAAATATGGAGGACTTGCTCCAAAGAAGAAGCCTTTGATTTCAAAG : GATCATGAACG - Q I W R T C S K E E A F D F K : G S - T N K Y G G L A P K K K P L I S K : D H E R V T N M E D L L Q R R S L - F Q R : I M N . . . . : . . 129826 TGCCTTTTTTGACTCCGCAGACTGGGCTCTATGCAAG : CAAGGTGCAGGAGTTGATCAAAA C L F - L R R L G S M Q : A R C R S - S K A F F D S A D W A L C K : Q G A G V D Q K V P F L T P Q T G L Y A S : K V Q E L I K . . . . : . . 129619 ATCAACGGTGGCTATAGAAACATTGCGTCCCAAATTACAG : AGAACAACTCATCAACAATT I N G G Y R N I A S Q I T : E N N S S T I S T V A I E T L R P K L Q : R T T H Q Q L N Q R W L - K H C V P N Y R : E Q L I N N . . . . . . 129422 GCCTCCTAGAAGACCTGCTTGTACATCTTGATTCACATGTGGTACCTTCAAAATGCTGAT A S - K T C L Y I L I H M W Y L Q N A D P P R R P A C T S - F T C G T F K M L I C L L E D L L V H L D S H V V P S K C - . . . . . . 129362 TTTGTTATGTTATTTGCTGGCTAAGTAGACATAATATGTCACTATAAATACATGGTTCTT F V M L F A G - V D I I C H Y K Y M V L L L C Y L L A K - T - Y V T I N T W F F F C Y V I C W L S R H N M S L - I H G S . . . . . . 129302 TTCTTCGATATGGGACTTGGATGTAATCACCAATAACTCTTTAAGAACTTTTGTTGCTTA F F D M G L G C N H Q - L F K N F C C L S S I W D L D V I T N N S L R T F V A - F L R Y G T W M - S P I T L - E L L L L . . . 129242 AGCATTTATAAATTATTATTTCCCA S I Y K L L F P A F I N Y Y F P K H L - I I I S Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-9_AGS-1_PPS_1 (131765 131664,131531 131484,129977 129915,129837 129790,129642 129580,129442 129392) (frame '2'; 372 bp, 124 residues) 1 LSPSSFPPFL SQLKYFSSFL FLPLLASLYL LSFKMADNNT TTQDFDGSSQ TTSTGNKYGG 61 LAPKKKPLIS KDHERAFFDS ADWALCKQGA GVDQKSTVAI ETLRPKLQRT THQQLPPRRP 121 ACTS- PGL 10 (- strand): 143041 142865 AGS-1 (143041 142865) SCR (e 0.768) Exon 1 143041 142865 ( 177 n); score: 0.768 PGS (143041 142865) SGN-U313022+ 3-phase translation of AGS-1 (-strand): . . . . . . 143041 TGTTAAAGAATAAAAAAAATCTCAAATTGGTGGTTAATGAGATGGGTGGACTACTTATAA C - R I K K I S N W W L M R W V D Y L - V K E - K K S Q I G G - - D G W T T Y K L K N K K N L K L V V N E M G G L L I . . . . . . 142981 GGCTTGGACAATCCTCCTCCCTTTGAGATAGCATTCAAAGTTTGAGTTAGGCCTAAAACC G L D N P P P F E I A F K V - V R P K T A W T I L L P L R - H S K F E L G L K P R L G Q S S S L - D S I Q S L S - A - N . . . . . . 142921 TAATCTAACATACACAATGACATAAAAAGGAAAATGATAGACTTTTCATCTATCAAT - S N I H N D I K R K M I D F S S I N N L T Y T M T - K G K - - T F H L S L I - H T Q - H K K E N D R L F I Y Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 142865 ATTGATAGATGAAAAGTCTATCATTTTCCTTTTTATGTCATTGTGTATGTTAGATTAGGT I D R - K V Y H F P F Y V I V Y V R L G L I D E K S I I F L F M S L C M L D - V - - M K S L S F S F L C H C V C - I R . . . . . . 142925 TTTAGGCCTAACTCAAACTTTGAATGCTATCTCAAAGGGAGGAGGATTGTCCAAGCCTTA F R P N S N F E C Y L K G R R I V Q A L L G L T Q T L N A I S K G G G L S K P Y F - A - L K L - M L S Q R E E D C P S L . . . . . . 142985 TAAGTAGTCCACCCATCTCATTAACCACCAATTTGAGATTTTTTTTATTCTTTAACA - V V H P S H - P P I - D F F Y S L T K - S T H L I N H Q F E I F F I L - I S S P P I S L T T N L R F F L F F N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 147862 148227 AGS-1 (147862 148227) SCR (e 0.844) Exon 1 147862 148227 ( 366 n); score: 0.844 PGS (147862 148227) SGN-U340257- 3-phase translation of AGS-1 (+strand): . . . . . . 147862 CATAACTGTGGTGCCTACTCTGAGCTGTCCTGAATCTATCCTGAATCACTCTCACCTGGT H N C G A Y S E L S - I Y P E S L S P G I T V V P T L S C P E S I L N H S H L V - L W C L L - A V L N L S - I T L T W . . . . . . 147922 CCAAACCCTCCTGAATCAAATCCATACCCCGCGGCCTAGGGTCTATAGACTTGAACCATC P N P P E S N P Y P A A - G L - T - T I Q T L L N Q I H T P R P R V Y R L E P S S K P S - I K S I P R G L G S I D L N H . . . . . . 147982 CCACCAGAGAGCGATAACGCCTACCATACAAGGCCTCAAACGGGGCCATATTAATGCTAG P P E S D N A Y H T R P Q T G P Y - C - H Q R A I T P T I Q G L K R G H I N A R P T R E R - R L P Y K A S N G A I L M L . . . . . . 148042 AACGGTAGATGTTGTTATACGCAAACTCCGCCAAAGGCAAGAACTGATTTCAATGACCAC N G R C C Y T Q T P P K A R T D F N D H T V D V V I R K L R Q R Q E L I S M T T E R - M L L Y A N S A K G K N - F Q - P . . . . . . 148102 CAAACTGCAAAACACAAGCCCGTGGCATGTCCTCAAGGACCTGAATAATATGCTCTGACT Q T A K H K P V A C P Q G P E - Y A L T K L Q N T S P W H V L K D L N N M L - L P N C K T Q A R G M S S R T - I I C S D . . . . . . 148162 GAACATCAGTCTGCGGGAGGAAATCTATGATAAGGTCAACTCGGGTGTGCAATTTAGCTT E H Q S A G G N L - - G Q L G C A I - L N I S L R E E I Y D K V N S G V Q F S L - T S V C G R K S M I R S T R V C N L A . 148222 GATATT D I I - Y Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-11_AGS-1_PPS_1 (147863 148159) (frame '2'; 294 bp, 98 residues) 1 ITVVPTLSCP ESILNHSHLV QTLLNQIHTP RPRVYRLEPS HQRAITPTIQ GLKRGHINAR 61 TVDVVIRKLR QRQELISMTT KLQNTSPWHV LKDLNNML- 3-phase translation of AGS-1 (-strand): . . . . . . 148227 AATATCAAGCTAAATTGCACACCCGAGTTGACCTTATCATAGATTTCCTCCCGCAGACTG N I K L N C T P E L T L S - I S S R R L I S S - I A H P S - P Y H R F P P A D - Y Q A K L H T R V D L I I D F L P Q T . . . . . . 148167 ATGTTCAGTCAGAGCATATTATTCAGGTCCTTGAGGACATGCCACGGGCTTGTGTTTTGC M F S Q S I L F R S L R T C H G L V F C C S V R A Y Y S G P - G H A T G L C F A D V Q S E H I I Q V L E D M P R A C V L . . . . . . 148107 AGTTTGGTGGTCATTGAAATCAGTTCTTGCCTTTGGCGGAGTTTGCGTATAACAACATCT S L V V I E I S S C L W R S L R I T T S V W W S L K S V L A F G G V C V - Q H L Q F G G H - N Q F L P L A E F A Y N N I . . . . . . 148047 ACCGTTCTAGCATTAATATGGCCCCGTTTGAGGCCTTGTATGGTAGGCGTTATCGCTCTC T V L A L I W P R L R P C M V G V I A L P F - H - Y G P V - G L V W - A L S L S Y R S S I N M A P F E A L Y G R R Y R S . . . . . . 147987 TGGTGGGATGGTTCAAGTCTATAGACCCTAGGCCGCGGGGTATGGATTTGATTCAGGAGG W W D G S S L - T L G R G V W I - F R R G G M V Q V Y R P - A A G Y G F D S G G L V G W F K S I D P R P R G M D L I Q E . . . . . . 147927 GTTTGGACCAGGTGAGAGTGATTCAGGATAGATTCAGGACAGCTCAGAGTAGGCACCACA V W T R - E - F R I D S G Q L R V G T T F G P G E S D S G - I Q D S S E - A P Q G L D Q V R V I Q D R F R T A Q S R H H . 147867 GTTATG V M L S Y Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-11_AGS-1_PPS_1 (148090 147863) (frame '0'; 228 bp, 76 residues) 1 NQFLPLAEFA YNNIYRSSIN MAPFEALYGR RYRSLVGWFK SIDPRPRGMD LIQEGLDQVR 61 VIQDRFRTAQ SRHHSY >C01HBa0216G16.1-_PGL-11_AGS-1_PPS_2 (148185 147964) (frame '1'; 219 bp, 73 residues) 1 ISSRRLMFSQ SILFRSLRTC HGLVFCSLVV IEISSCLWRS LRITTSTVLA LIWPRLRPCM 61 VGVIALWWDG SSL- PGL 12 (- strand): 149295 148588 AGS-1 (149295 148588) SCR (e 0.660) Exon 1 149295 148588 ( 708 n); score: 0.660 PGS (149295 148588) SGN-U334737- 3-phase translation of AGS-1 (-strand): . . . . . . 149295 GAACAAATATCCTTGTACCCAAATGCATAATCACTATGGGAAAAATGAGGTTTTTTTTAA E Q I S L Y P N A - S L W E K - G F F - N K Y P C T Q M H N H Y G K N E V F F K T N I L V P K C I I T M G K M R F F L . . . . . . 149235 GTGAAGGGACTAGTTGCGGCATCGGAAAGTTGGTATCTTGGTGAGAGACAAAGTAGAAGA V K G L V A A S E S W Y L G E R Q S R R - R D - L R H R K V G I L V R D K V E E S E G T S C G I G K L V S W - E T K - K . . . . . . 149175 AGTGTGTGTTGCATGGTGAGTTTGTATCATGATGTGATCCACATGAGTAAGCTTGTCGAG S V C C M V S L Y H D V I H M S K L V E V C V A W - V C I M M - S T - V S L S S K C V L H G E F V S - C D P H E - A C R . . . . . . 149115 CCTAAGAGTGTAAGCCTACACTAAATCAAAGGAAGAGTCAGGATTGATAGCCATGTGATT P K S V S L H - I K G R V R I D S H V I L R V - A Y T K S K E E S G L I A M - L A - E C K P T L N Q R K S Q D - - P C D . . . . . . 149055 ACTATAGCTTAAAAGTGTATACTTTTGTACAAATGTTGTTTTGAGTCATAGTGCGTCGCT T I A - K C I L L Y K C C F E S - C V A L - L K S V Y F C T N V V L S H S A S L Y Y S L K V Y T F V Q M L F - V I V R R . . . . . . 148995 TGAGGACAAACAACAAATTTAAGTTGAGGGTGTTGATGTACCATGGTTTCATGGTATTTT - G Q T T N L S - G C - C T M V S W Y F E D K Q Q I - V E G V D V P W F H G I F L R T N N K F K L R V L M Y H G F M V F . . . . . . 148935 CAATGCATTTTACTTAAGATTTATGTGTGTCTAAAACCTTTTTGTAGTATTTTTTAACAA Q C I L L K I Y V C L K P F C S I F - Q N A F Y L R F M C V - N L F V V F F N K S M H F T - D L C V S K T F L - Y F L T . . . . . . 148875 GTTTTTGTTTTGTTTAGCAGGAAAGATGTCTAGGTTGAAAGCGCATAAGGGAGCAAAAAA V F V L F S R K D V - V E S A - G S K K F L F C L A G K M S R L K A H K G A K N S F C F V - Q E R C L G - K R I R E Q K . . . . . . 148815 TTGCAAAAGATGACCTACGAAGGTTATCGACGGTCAGTCGTTTGATCGACGGATCAAAGT L Q K M T Y E G Y R R S V V - S T D Q S C K R - P T K V I D G Q S F D R R I K V I A K D D L R R L S T V S R L I D G S K . . . . . . 148755 TGGTGATCGTCGGTGCAATTCACGCTTTAGGAGAAGATCAGAAAAATCTGACCAATTCTA W - S S V Q F T L - E K I R K I - P I L G D R R C N S R F R R R S E K S D Q F - L V I V G A I H A L G E D Q K N L T N S . . . . . . 148695 GAAGCACGATAGTAAACAACGGTCTGTCGATTGATCGACGGACCCAAACTGGTGAATCGT E A R - - T T V C R L I D G P K L V N R K H D S K Q R S V D - S T D P N W - I V R S T I V N N G L S I D R R T Q T G E S . . . . . 148635 CGATTGGTTCGGAGAAACTTCCAGTACCTTAATTTTCAAGATTCTAAG R L V R R N F Q Y L N F Q D S K D W F G E T S S T L I F K I L S I G S E K L P V P - F S R F - Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-12_AGS-1_PPS_1 (148837 148604) (frame '0'; 231 bp, 77 residues) 1 KRIREQKIAK DDLRRLSTVS RLIDGSKLVI VGAIHALGED QKNLTNSRST IVNNGLSIDR 61 RTQTGESSIG SEKLPVP- 3-phase translation of AGS-1 (+strand): . . . . . . 148588 CTTAGAATCTTGAAAATTAAGGTACTGGAAGTTTCTCCGAACCAATCGACGATTCACCAG L R I L K I K V L E V S P N Q S T I H Q L E S - K L R Y W K F L R T N R R F T S - N L E N - G T G S F S E P I D D S P . . . . . . 148648 TTTGGGTCCGTCGATCAATCGACAGACCGTTGTTTACTATCGTGCTTCTAGAATTGGTCA F G S V D Q S T D R C L L S C F - N W S L G P S I N R Q T V V Y Y R A S R I G Q V W V R R S I D R P L F T I V L L E L V . . . . . . 148708 GATTTTTCTGATCTTCTCCTAAAGCGTGAATTGCACCGACGATCACCAACTTTGATCCGT D F S D L L L K R E L H R R S P T L I R I F L I F S - S V N C T D D H Q L - S V R F F - S S P K A - I A P T I T N F D P . . . . . . 148768 CGATCAAACGACTGACCGTCGATAACCTTCGTAGGTCATCTTTTGCAATTTTTTGCTCCC R S N D - P S I T F V G H L L Q F F A P D Q T T D R R - P S - V I F C N F L L P S I K R L T V D N L R R S S F A I F C S . . . . . . 148828 TTATGCGCTTTCAACCTAGACATCTTTCCTGCTAAACAAAACAAAAACTTGTTAAAAAAT L C A F N L D I F P A K Q N K N L L K N Y A L S T - T S F L L N K T K T C - K I L M R F Q P R H L S C - T K Q K L V K K . . . . . . 148888 ACTACAAAAAGGTTTTAGACACACATAAATCTTAAGTAAAATGCATTGAAAATACCATGA T T K R F - T H I N L K - N A L K I P - L Q K G F R H T - I L S K M H - K Y H E Y Y K K V L D T H K S - V K C I E N T M . . . . . . 148948 AACCATGGTACATCAACACCCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGACGCACTA N H G T S T P S T - I C C L S S S D A L T M V H Q H P Q L K F V V C P Q A T H Y K P W Y I N T L N L N L L F V L K R R T . . . . . . 149008 TGACTCAAAACAACATTTGTACAAAAGTATACACTTTTAAGCTATAGTAATCACATGGCT - L K T T F V Q K Y T L L S Y S N H M A D S K Q H L Y K S I H F - A I V I T W L M T Q N N I C T K V Y T F K L - - S H G . . . . . . 149068 ATCAATCCTGACTCTTCCTTTGATTTAGTGTAGGCTTACACTCTTAGGCTCGACAAGCTT I N P D S S F D L V - A Y T L R L D K L S I L T L P L I - C R L T L L G S T S L Y Q S - L F L - F S V G L H S - A R Q A . . . . . . 149128 ACTCATGTGGATCACATCATGATACAAACTCACCATGCAACACACACTTCTTCTACTTTG T H V D H I M I Q T H H A T H T S S T L L M W I T S - Y K L T M Q H T L L L L C Y S C G S H H D T N S P C N T H F F Y F . . . . . . 149188 TCTCTCACCAAGATACCAACTTTCCGATGCCGCAACTAGTCCCTTCACTTAAAAAAAACC S L T K I P T F R C R N - S L H L K K T L S P R Y Q L S D A A T S P F T - K K P V S H Q D T N F P M P Q L V P S L K K N . . . . . 149248 TCATTTTTCCCATAGTGATTATGCATTTGGGTACAAGGATATTTGTTC S F F P - - L C I W V Q G Y L F H F S H S D Y A F G Y K D I C L I F P I V I M H L G T R I F V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 184248 185796 AGS-1 (184248 184825) SCR (e 0.824) Exon 1 184248 184825 ( 578 n); score: 0.824 PGS (184248 184825) SGN-U337472+ PGS (184248 184538) SGN-U321905+ 3-phase translation of AGS-1 (+strand): . . . . . . 184248 GTTTTGCTGAGAGGAAACTAACATTATGTAGACATCAAAAATCAAGGTATTTCTGATCTC V L L R G N - H Y V D I K N Q G I S D L F C - E E T N I M - T S K I K V F L I S F A E R K L T L C R H Q K S R Y F - S . . . . . . 184308 TTAACAGTAAAATGACTATATTTCATCCATGAAATAATGACATACAATTTTGTAGTTATT L T V K - L Y F I H E I M T Y N F V V I - Q - N D Y I S S M K - - H T I L - L L L N S K M T I F H P - N N D I Q F C S Y . . . . . . 184368 ATTATGTATTTATTAGAATCAAGAATAGTAACAAGGTACTCGAAACTCAAAACTCACAAT I M Y L L E S R I V T R Y S K L K T H N L C I Y - N Q E - - Q G T R N S K L T I Y Y V F I R I K N S N K V L E T Q N S Q . . . . . . 184428 AATTATGATCATCCCATAACATATGATTCTGATTCTGATTATTTGAGGGTTCAAGGTGGA N Y D H P I T Y D S D S D Y L R V Q G G I M I I P - H M I L I L I I - G F K V D - L - S S H N I - F - F - L F E G S R W . . . . . . 184488 TTCTTAAGGTGTGTTCTTCATTCTCTTGAGCTTCCTTATCCTGAAGTTTTTCATCTATGT F L R C V L H S L E L P Y P E V F H L C S - G V F F I L L S F L I L K F F I Y V I L K V C S S F S - A S L S - S F S S M . . . . . . 184548 TTTTTTCTAAAAAATAGCTACCCTTAGCAGTAGAGGGTATTGTTTTTCTGTATATTATTG F F L K N S Y P - Q - R V L F F C I L L F F - K I A T L S S R G Y C F S V Y Y - F F S K K - L P L A V E G I V F L Y I I . . . . . . 184608 ATCAATAATGTCCAATATGTGGCTTCATTTGGATAGTTAGTTAGTTGTTTAGTTTTCTTC I N N V Q Y V A S F G - L V S C L V F F S I M S N M W L H L D S - L V V - F S S D Q - C P I C G F I W I V S - L F S F L . . . . . . 184668 CCTATAAATATGTTTGCACCCAAAGAATTCAAACCTACAAATGAGTTGCTGGAACTTTTG P I N M F A P K E F K P T N E L L E L L L - I C L H P K N S N L Q M S C W N F C P Y K Y V C T Q R I Q T Y K - V A G T F . . . . . . 184728 TACTAGATGTTGCATTTCCAGTGACATTCTGTAATTTTACTTCATGATTGCTGAGTATTG Y - M L H F Q - H S V I L L H D C - V L T R C C I S S D I L - F Y F M I A E Y - V L D V A F P V T F C N F T S - L L S I . . . . 184788 ATGAATAATTCTCAGTATGTGTCTTCATTTTACTACTG M N N S Q Y V S S F Y Y - I I L S M C L H F T T D E - F S V C V F I L L L Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-13_AGS-1_PPS_1 (184323 184574) (frame '1'; 249 bp, 83 residues) 1 LYFIHEIMTY NFVVIIMYLL ESRIVTRYSK LKTHNNYDHP ITYDSDSDYL RVQGGFLRCV 61 LHSLELPYPE VFHLCFFLKN SYP- 3-phase translation of AGS-1 (-strand): . . . . . . 184825 CAGTAGTAAAATGAAGACACATACTGAGAATTATTCATCAATACTCAGCAATCATGAAGT Q - - N E D T Y - E L F I N T Q Q S - S S S K M K T H T E N Y S S I L S N H E V V V K - R H I L R I I H Q Y S A I M K . . . . . . 184765 AAAATTACAGAATGTCACTGGAAATGCAACATCTAGTACAAAAGTTCCAGCAACTCATTT K I T E C H W K C N I - Y K S S S N S F K L Q N V T G N A T S S T K V P A T H L - N Y R M S L E M Q H L V Q K F Q Q L I . . . . . . 184705 GTAGGTTTGAATTCTTTGGGTGCAAACATATTTATAGGGAAGAAAACTAAACAACTAACT V G L N S L G A N I F I G K K T K Q L T - V - I L W V Q T Y L - G R K L N N - L C R F E F F G C K H I Y R E E N - T T N . . . . . . 184645 AACTATCCAAATGAAGCCACATATTGGACATTATTGATCAATAATATACAGAAAAACAAT N Y P N E A T Y W T L L I N N I Q K N N T I Q M K P H I G H Y - S I I Y R K T I - L S K - S H I L D I I D Q - Y T E K Q . . . . . . 184585 ACCCTCTACTGCTAAGGGTAGCTATTTTTTAGAAAAAAACATAGATGAAAAACTTCAGGA T L Y C - G - L F F R K K H R - K T S G P S T A K G S Y F L E K N I D E K L Q D Y P L L L R V A I F - K K T - M K N F R . . . . . . 184525 TAAGGAAGCTCAAGAGAATGAAGAACACACCTTAAGAATCCACCTTGAACCCTCAAATAA - G S S R E - R T H L K N P P - T L K - K E A Q E N E E H T L R I H L E P S N N I R K L K R M K N T P - E S T L N P Q I . . . . . . 184465 TCAGAATCAGAATCATATGTTATGGGATGATCATAATTATTGTGAGTTTTGAGTTTCGAG S E S E S Y V M G - S - L L - V L S F E Q N Q N H M L W D D H N Y C E F - V S S I R I R I I C Y G M I I I I V S F E F R . . . . . . 184405 TACCTTGTTACTATTCTTGATTCTAATAAATACATAATAATAACTACAAAATTGTATGTC Y L V T I L D S N K Y I I I T T K L Y V T L L L F L I L I N T - - - L Q N C M S V P C Y Y S - F - - I H N N N Y K I V C . . . . . . 184345 ATTATTTCATGGATGAAATATAGTCATTTTACTGTTAAGAGATCAGAAATACCTTGATTT I I S W M K Y S H F T V K R S E I P - F L F H G - N I V I L L L R D Q K Y L D F H Y F M D E I - S F Y C - E I R N T L I . . . . 184285 TTGATGTCTACATAATGTTAGTTTCCTCTCAGCAAAAC L M S T - C - F P L S K - C L H N V S F L S A K F D V Y I M L V S S Q Q N Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-13_AGS-1_PPS_1 (184608 184414) (frame '2'; 192 bp, 64 residues) 1 SIIYRKTIPS TAKGSYFLEK NIDEKLQDKE AQENEEHTLR IHLEPSNNQN QNHMLWDDHN 61 YCEF- AGS-2 (185059 185454,185561 185591) SCR (e 0.891 d 0.000 a 0.999,e 0.581) Exon 1 185059 185454 ( 396 n); score: 0.891 Intron 1 185455 185560 ( 106 n); Pd: 0.000 Pa: 0.999 Exon 2 185561 185591 ( 31 n); score: 0.581 PGS (185059 185454,185561 185591) SGN-U337473- 3-phase translation of AGS-2 (+strand): . . . . . . 185059 CATGCTTCAATATATTTATAGTTCCGTCTTGTTTCGGTTTTGGATAGCATTCCATTATTT H A S I Y L - F R L V S V L D S I P L F M L Q Y I Y S S V L F R F W I A F H Y L C F N I F I V P S C F G F G - H S I I . . . . . . 185119 ATTTGTTTCTTGGAACCTAGAAGCTAATGGATTCTTTGGTTTATAGTGCTAATCATTCGT I C F L E P R S - W I L W F I V L I I R F V S W N L E A N G F F G L - C - S F V Y L F L G T - K L M D S L V Y S A N H S . . . . . . 185179 AGTACTCATCGATACTACATTAAGTAGCCAATTTGTTTATACTACTAGGATTTATTCTTT S T H R Y Y I K - P I C L Y Y - D L F F V L I D T T L S S Q F V Y T T R I Y S F - Y S S I L H - V A N L F I L L G F I L . . . . . . 185239 TGATGAACTTGTTTGGATCAGTAGTTTGTTTTTAGAAGAAATTTTTATTTTGTGTTTAGA - - T C L D Q - F V F R R N F Y F V F R D E L V W I S S L F L E E I F I L C L E L M N L F G S V V C F - K K F L F C V - . . . . . . 185299 AGAAATTGATTACTTTTGGGGCTCTTACAACTGAAATTTAAAATTGATTAATTGTTAAAT R N - L L L G L L Q L K F K I D - L L N E I D Y F W G S Y N - N L K L I N C - I K K L I T F G A L T T E I - N - L I V K . . . . . . 185359 TTCATAATTTTGTGTTCTTTATTAATAGATTAGATTTGTTTACTAGAGGAATTGATATTC F I I L C S L L I D - I C L L E E L I F S - F C V L Y - - I R F V Y - R N - Y S F H N F V F F I N R L D L F T R G I D I . . . . : . . 185419 AAGCAGTTAACGTTGTTATCAATTCTGATTTTCCTA : GTTGGACAATTAGGGAGATTTGTG K Q L T L L S I L I F L : V G Q L G R F V S S - R C Y Q F - F S - : L D N - G D L - Q A V N V V I N S D F P : S W T I R E I C . 185585 AAGTTTG K F S L E V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (185389 185480,185561 185640,185735 185796) SCR (e 0.978 d 0.992 a 0.999,e 0.788 d 0.000 a 0.926,e 0.855) Exon 1 185389 185480 ( 92 n); score: 0.978 Intron 1 185481 185560 ( 80 n); Pd: 0.992 Pa: 0.999 Exon 2 185561 185640 ( 80 n); score: 0.788 Intron 2 185641 185734 ( 94 n); Pd: 0.000 Pa: 0.926 Exon 3 185735 185796 ( 62 n); score: 0.855 PGS (185389 185480) SGN-U333250- PGS (185391 185480,185561 185640,185735 185796) SGN-U335893+ 3-phase translation of AGS-3 (+strand): . . . . . . 185389 TAGATTTGTTTACTAGAGGAATTGATATTCAAGCAGTTAACGTTGTTATCAATTCTGATT - I C L L E E L I F K Q L T L L S I L I R F V Y - R N - Y S S S - R C Y Q F - F D L F T R G I D I Q A V N V V I N S D . . . . : . . 185449 TTCCTAAGAACACAGAAACGTATTTGCACAGG : GTTGGACAATTAGGGAGATTTGTGAAGT F L R T Q K R I C T G : L D N - G D L - S S - E H R N V F A Q : G W T I R E I C E V F P K N T E T Y L H R : V G Q L G R F V K . . . . . . : 185589 TTGGTTTAGTTGTTAGCCATGTTACTTTTGAGGATCACTTCACTTTGTATGG : AATTGAAC L V - L L A M L L L R I T S L C M : E L N W F S C - P C Y F - G S L H F V W : N - T F G L V V S H V T F E D H F T L Y G : I E . . . . . . 185743 AAGAACTAGGAATAGAAATCAAGAAAATCCCTTCACAGATAGATTAAGCTATAT K N - E - K S R K S L H R - I K L Y R T R N R N Q E N P F T D R L S Y Q E L G I E I K K I P S Q I D - A I Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-13_AGS-3_PPS_1 (185391 185480,185561 185640,185735 185789) (frame '0'; 222 bp, 74 residues) 1 DLFTRGIDIQ AVNVVINSDF PKNTETYLHR VGQLGRFVKF GLVVSHVTFE DHFTLYGIEQ 61 ELGIEIKKIP SQID- PGL 14 (- strand): 190281 187344 AGS-1 (189969 189926,189712 189585,187364 187344) SCR (e 0.909 d 0.000 a 0.000,e 0.867 d 0.000 a 0.874,e 0.714) Exon 1 189969 189926 ( 44 n); score: 0.909 Intron 1 189925 189713 ( 213 n); Pd: 0.000 Pa: 0.000 Exon 2 189712 189585 ( 128 n); score: 0.867 Intron 2 189584 187365 (2220 n); Pd: 0.000 Pa: 0.874 Exon 3 187364 187344 ( 21 n); score: 0.714 PGS (189969 189926,189712 189585,187364 187344) SGN-U325194- 3-phase translation of AGS-1 (-strand): . . . . . : . 189969 CAACGAATTATACAATTGTGAATTATACAATTGTAGTGAAATAC : GCCAACGAATTATACA Q R I I Q L - I I Q L - - N T : P T N Y T N E L Y N C E L Y N C S E I : R Q R I I Q T N Y T I V N Y T I V V K Y : A N E L Y . . . . . . 189696 ATTATATATGTATAGCAAATTATACAATTTTATGTTTGCTATGGAGCGCAATTATACAAA I I Y V - Q I I Q F Y V C Y G A Q L Y K L Y M Y S K L Y N F M F A M E R N Y T K N Y I C I A N Y T I L C L L W S A I I Q . . . . . . : 189636 GTTTGCTATAGCATAAAAATATAAATTTTTTATTTGCTATACGTAAAAGTTG : CTTCCAAC V C Y S I K I - I F Y L L Y V K V : A S N F A I A - K Y K F F I C Y T - K L : L P T S L L - H K N I N F L F A I R K S C : F Q . . 187356 AAATAAATGATAT K - M I N K - Y Q I N D Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (190000 189941,189788 189727,189678 189571) SCR (e 0.800 d 0.000 a 0.000,e 0.903 d 0.000 a 0.000,e 0.898) Exon 1 190000 189941 ( 60 n); score: 0.800 Intron 1 189940 189789 ( 152 n); Pd: 0.000 Pa: 0.000 Exon 2 189788 189727 ( 62 n); score: 0.903 Intron 2 189726 189679 ( 48 n); Pd: 0.000 Pa: 0.000 Exon 3 189678 189571 ( 108 n); score: 0.898 PGS (190000 189941,189788 189727,189678 189571) SGN-U335137+ 3-phase translation of AGS-2 (-strand): . . . . . . : 190000 ATTTTACTTCAAATATTGCAGAGAAAAAGGCCAACGAATTATACAATTGTGAATTATACA : I L L Q I L Q R K R P T N Y T I V N Y T : F Y F K Y C R E K G Q R I I Q L - I I Q : F T S N I A E K K A N E L Y N C E L Y : . . . . . . 189788 GCAAAACAAATTATACAATTGCGGCGAAATAGGCCAGCGAATTATACAATTTAGGCCAGC A K Q I I Q L R R N R P A N Y T I - A S Q N K L Y N C G E I G Q R I I Q F R P A S K T N Y T I A A K - A S E L Y N L G Q . : . . . . . 189728 GA : ATTATACAATTTTATGTTTGCTATGGAGCGCAATTATACAAAGTTTGCTATAGCATAA E : L Y N F M F A M E R N Y T K F A I A - : N Y T I L C L L W S A I I Q S L L - H K R : I I Q F Y V C Y G A Q L Y K V C Y S I . . . . . 189620 AAATATAAATTTTTTATTTGCTATACGTAAAAGTTGCCCATTTATTAATG K Y K F F I C Y T - K L P I Y - N I N F L F A I R K S C P F I N K I - I F Y L L Y V K V A H L L M Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (190281 189735) SCR (e 0.888) Exon 1 190281 189735 ( 547 n); score: 0.888 PGS (190281 189735) SGN-U315404- 3-phase translation of AGS-3 (-strand): . . . . . . 190281 TTAAGGGAAAATTATATATAATAGCAAACTAACAGCCTAAATTAAATGGAATAGCTAGGG L R E N Y I - - Q T N S L N - M E - L G - G K I I Y N S K L T A - I K W N S - G K G K L Y I I A N - Q P K L N G I A R . . . . . . 190221 TTTGATTTAATTGTGCTCCATAGCAAACATTAGTTAAAATTTGTCAGCGTCTCTCTCTCA F D L I V L H S K H - L K F V S V S L S L I - L C S I A N I S - N L S A S L S Q V - F N C A P - Q T L V K I C Q R L S L . . . . . . 190161 AAAATCTCGCTCGCCACTCTCCATTCTCGCTCGCCTCTCTCGCTTTATACACAGAAGTGT K I S L A T L H S R S P L S L Y T Q K C K S R S P L S I L A R L S R F I H R S V K N L A R H S P F S L A S L A L Y T E V . . . . . . 190101 ATAATTCTGTTTCTGTTTTATATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATG I I L F L F Y I K R E K I V Y T H A K M - F C F C F I - S E R K L Y I H M Q K C Y N S V S V L Y K A R E N C I Y T C K N . . . . . . 190041 TATATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAATATTGC Y I F V L Y T - L Y N L Q T F Y F K Y C I S S C Y T L N Y T I Y K H F T S N I A V Y L R V I H L I I Q F T N I L L Q I L . . . . . . 189981 AGAGAAAAAGGCCAACGAATTATACAATTGTGAATTATACAATTGTAGTGAAATACAATT R E K G Q R I I Q L - I I Q L - - N T I E K K A N E L Y N C E L Y N C S E I Q F Q R K R P T N Y T I V N Y T I V V K Y N . . . . . . 189921 TTCTCTAGCTTTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTGTAAAGCGAG F S S F I Q Q K C I Y C V S V F V - S E S L A L Y N R S V Y I V F L F L C K A R F L - L Y T T E V Y I L C F C F C V K R . . . . . . 189861 AAAAACATATATCTTCTTGCTATACACTTATAATTATGCAATATACATACATTTTAATTC K N I Y L L A I H L - L C N I H T F - F K T Y I F L L Y T Y N Y A I Y I H F N S E K H I S S C Y T L I I M Q Y T Y I L I . . . . . . 189801 GATTCAACTGTATGCAAAACAAATTATACAATTGCGGCGAAATAGGCCAGCGAATTATAC D S T V C K T N Y T I A A K - A S E L Y I Q L Y A K Q I I Q L R R N R P A N Y T R F N C M Q N K L Y N C G E I G Q R I I . 189741 AATTTAG N L I - Q F Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-14_AGS-3_PPS_1 (190076 189735) (frame '2'; 339 bp, 113 residues) 1 SERKLYIHMQ KCISSCYTLN YTIYKHFTSN IAEKKANELY NCELYNCSEI QFSLALYNRS 61 VYIVFLFLCK ARKTYIFLLY TYNYAIYIHF NSIQLYAKQI IQLRRNRPAN YTI- 3-phase translation of AGS-3 (+strand): . . . . . . 189735 CTAAATTGTATAATTCGCTGGCCTATTTCGCCGCAATTGTATAATTTGTTTTGCATACAG L N C I I R W P I S P Q L Y N L F C I Q - I V - F A G L F R R N C I I C F A Y S K L Y N S L A Y F A A I V - F V L H T . . . . . . 189795 TTGAATCGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATA L N R I K M Y V Y C I I I S V - Q E D I - I E L K C M Y I A - L - V Y S K K I Y V E S N - N V C I L H N Y K C I A R R Y . . . . . . 189855 TGTTTTTCTCGCTTTACACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGC C F S R F T Q K Q K H N I Y T S V V - S V F L A L H K N R N T I Y T L L L Y K A M F F S L Y T K T E T Q Y I H F C C I K . . . . . . 189915 TAGAGAAAATTGTATTTCACTACAATTGTATAATTCACAATTGTATAATTCGTTGGCCTT - R K L Y F T T I V - F T I V - F V G L R E N C I S L Q L Y N S Q L Y N S L A F L E K I V F H Y N C I I H N C I I R W P . . . . . . 189975 TTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGA F L C N I - S K M F V N C I I K C I T R F S A I F E V K C L - I V - L S V - H E F S L Q Y L K - N V C K L Y N - V Y N T . . . . . . 190035 AGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATATAAAACAGAAACA R Y T F L H V Y I Q F S L A L Y K T E T D I H F C M C I Y N F L S L Y I K Q K Q K I Y I F A C V Y T I F S R F I - N R N . . . . . . 190095 GAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCG E L Y T S V Y K A R E A S E N G E W R A N Y T L L C I K R E R R A R M E S G E R R I I H F C V - S E R G E R E W R V A S . . . . . . 190155 AGATTTTTGAGAGAGAGACGCTGACAAATTTTAACTAATGTTTGCTATGGAGCACAATTA R F L R E R R - Q I L T N V C Y G A Q L D F - E R D A D K F - L M F A M E H N - E I F E R E T L T N F N - C L L W S T I . . . . . . 190215 AATCAAACCCTAGCTATTCCATTTAATTTAGGCTGTTAGTTTGCTATTATATATAATTTT N Q T L A I P F N L G C - F A I I Y N F I K P - L F H L I - A V S L L L Y I I F K S N P S Y S I - F R L L V C Y Y I - F . 190275 CCCTTAA P L P - S L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (- strand): 192693 191719 AGS-1 (192693 191719) SCR (e 0.756) Exon 1 192693 191719 ( 975 n); score: 0.756 PGS (192369 191719) SGN-U315286+ PGS (192645 191728) SGN-U315285+ PGS (192127 191728) SGN-U315280+ PGS (192130 191876) SGN-U335075+ PGS (192455 191896) SGN-U335071- PGS (192050 191900) SGN-U315283+ PGS (192693 192001) SGN-U335080- PGS (192624 192093) SGN-U335078+ 3-phase translation of AGS-1 (-strand): . . . . . . 192693 AAACCTAAAACCCTCTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGTTTGATGAACT K P K T L F V N N D A L V - K K V - - T N L K P S L L I M M P W Y K R R F D E L T - N P L C - - - C L G I K E G L M N . . . . . . 192633 AAAAGAATGAGGTTAGGGGATCGGGTGTCACGAACCGACACGTAGTAATAATGGATTGGG K R M R L G D R V S R T D T - - - W I G K E - G - G I G C H E P T R S N N G L G - K N E V R G S G V T N R H V V I M D W . . . . . . 192573 TGTCACGAACCGACACGCAGTATTAATGGATCGGGTGTCACGAACCGACACGTAGTATTA C H E P T R S I N G S G V T N R H V V L V T N R H A V L M D R V S R T D T - Y - V S R T D T Q Y - W I G C H E P T R S I . . . . . . 192513 GGGGATCGGGTGTCACAAACCGACACGTAGTATTAATGGATCGGGTGTCACGAACCGACA G D R V S Q T D T - Y - W I G C H E P T G I G C H K P T R S I N G S G V T N R H R G S G V T N R H V V L M D R V S R T D . . . . . . 192453 CGTAGTATTAGGGGATTGGAGTGTCACGTTCCAACACCAGGATAGTAAAAAGAATGAATT R S I R G L E C H V P T P G - - K E - I V V L G D W S V T F Q H Q D S K K N E F T - Y - G I G V S R S N T R I V K R M N . . . . . . 192393 TGAATTATGTTACTGTACTCAATTTAATGAACCTGTTTCCCAAATGGGTATGGTGTGGAG - I M L L Y S I - - T C F P N G Y G V E E L C Y C T Q F N E P V S Q M G M V W R L N Y V T V L N L M N L F P K W V W C G . . . . . . 192333 GCTTGAGTCCTCATGGATGTGCTTGGGTTGTGCCCAATGGCCATGGTACTTGTTGTTGAC A - V L M D V L G L C P M A M V L V V D L E S S W M C L G C A Q W P W Y L L L T G L S P H G C A W V V P N G H G T C C - . . . . . . 192273 ACCTGTTAAGTGTTATGTTTGATTTTATGTTATTATTCGATATATATTGTTTTCTATTTT T C - V L C L I L C Y Y S I Y I V F Y F P V K C Y V - F Y V I I R Y I L F S I L H L L S V M F D F M L L F D I Y C F L F . . . . . . 192213 GAGTTGGCCGATGATATCTACTCAGTACTCGTGTTTTGTACTGACCCCTACTTGTATGTT E L A D D I Y S V L V F C T D P Y L Y V S W P M I S T Q Y S C F V L T P T C M F - V G R - Y L L S T R V L Y - P L L V C . . . . . . 192153 TTCTTTTTGTTAATTGTGGAGTGCAGCAAACGTAGCGTCGTCTTCAACTCAACCGCAACT F F L L I V E C S K R S V V F N S T A T S F C - L W S A A N V A S S S T Q P Q L F L F V N C G V Q Q T - R R L Q L N R N . . . . . . 192093 CTAGCCAGTCTTCGTCACGTCAGATTTCAGGGTGAGCTATTGTTTCTAGCTTGGACTGGG L A S L R H V R F Q G E L L F L A W T G - P V F V T S D F R V S Y C F - L G L G S S Q S S S R Q I S G - A I V S S L D W . . . . . . 192033 TCTTGTTCTTCACGTCTTGATGCCTTGAAGTTCTGGCATGGACTATCTGTTTAGTTATTT S C S S R L D A L K F W H G L S V - L F L V L H V L M P - S S G M D Y L F S Y F V L F F T S - C L E V L A W T I C L V I . . . . . . 191973 TAGCTTCTTAGATACTCTAAGACTTAGTAATTTGAGGATAGATGTTCTTGTGATGGTGAC - L L R Y S K T - - F E D R C S C D G D S F L D T L R L S N L R I D V L V M V T L A S - I L - D L V I - G - M F L - W - . . . . . . 191913 TTCCAGATTTTGGGGATAGTAATTGATAAATTTTAGAAGTTAGTTATTGGTTATATTAAT F Q I L G I V I D K F - K L V I G Y I N S R F W G - - L I N F R S - L L V I L M L P D F G D S N - - I L E V S Y W L Y - . . . . . . 191853 GAGTTTTAAGTCTTCCGCATTATTTTCTGTTTATTATGATTGAATTGTTGGGGTTTAAAT E F - V F R I I F C L L - L N C W G L N S F K S S A L F S V Y Y D - I V G V - I - V L S L P H Y F L F I M I E L L G F K . . . . . . 191793 CGATTGGTTCGCTCACATAGGAGGTTAAGTGTGGGTGCCACTCGTGGCTCGTTTTGGGTC R L V R S H R R L S V G A T R G S F W V D W F A H I G G - V W V P L V A R F G S S I G S L T - E V K C G C H S W L V L G . . 191733 GTGACAGTCAAATGG V T V K W - Q S N R D S Q M Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1-_PGL-15_AGS-1_PPS_1 (192264 191980) (frame '1'; 282 bp, 94 residues) 1 VLCLILCYYS IYIVFYFELA DDIYSVLVFC TDPYLYVFFL LIVECSKRSV VFNSTATLAS 61 LRHVRFQGEL LFLAWTGSCS SRLDALKFWH GLSV- >C01HBa0216G16.1-_PGL-15_AGS-1_PPS_2 (192512 192252) (frame '2'; 258 bp, 86 residues) 1 GIGCHKPTRS INGSGVTNRH VVLGDWSVTF QHQDSKKNEF ELCYCTQFNE PVSQMGMVWR 61 LESSWMCLGC AQWPWYLLLT PVKCYV- 3-phase translation of AGS-1 (+strand): . . . . . . 191719 CCATTTGACTGTCACGACCCAAAACGAGCCACGAGTGGCACCCACACTTAACCTCCTATG P F D C H D P K R A T S G T H T - P P M H L T V T T Q N E P R V A P T L N L L C I - L S R P K T S H E W H P H L T S Y . . . . . . 191779 TGAGCGAACCAATCGATTTAAACCCCAACAATTCAATCATAATAAACAGAAAATAATGCG - A N Q S I - T P T I Q S - - T E N N A E R T N R F K P Q Q F N H N K Q K I M R V S E P I D L N P N N S I I I N R K - C . . . . . . 191839 GAAGACTTAAAACTCATTAATATAACCAATAACTAACTTCTAAAATTTATCAATTACTAT E D L K L I N I T N N - L L K F I N Y Y K T - N S L I - P I T N F - N L S I T I G R L K T H - Y N Q - L T S K I Y Q L L . . . . . . 191899 CCCCAAAATCTGGAAGTCACCATCACAAGAACATCTATCCTCAAATTACTAAGTCTTAGA P Q N L E V T I T R T S I L K L L S L R P K I W K S P S Q E H L S S N Y - V L E S P K S G S H H H K N I Y P Q I T K S - . . . . . . 191959 GTATCTAAGAAGCTAAAATAACTAAACAGATAGTCCATGCCAGAACTTCAAGGCATCAAG V S K K L K - L N R - S M P E L Q G I K Y L R S - N N - T D S P C Q N F K A S R S I - E A K I T K Q I V H A R T S R H Q . . . . . . 192019 ACGTGAAGAACAAGACCCAGTCCAAGCTAGAAACAATAGCTCACCCTGAAATCTGACGTG T - R T R P S P S - K Q - L T L K S D V R E E Q D P V Q A R N N S S P - N L T - D V K N K T Q S K L E T I A H P E I - R . . . . . . 192079 ACGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGACGCTACGTTTGCTGCACTCCAC T K T G - S C G - V E D D A T F A A L H R R L A R V A V E L K T T L R L L H S T D E D W L E L R L S - R R R Y V C C T P . . . . . . 192139 AATTAACAAAAAGAAAACATACAAGTAGGGGTCAGTACAAAACACGAGTACTGAGTAGAT N - Q K E N I Q V G V S T K H E Y - V D I N K K K T Y K - G S V Q N T S T E - I Q L T K R K H T S R G Q Y K T R V L S R . . . . . . 192199 ATCATCGGCCAACTCAAAATAGAAAACAATATATATCGAATAATAACATAAAATCAAACA I I G Q L K I E N N I Y R I I T - N Q T S S A N S K - K T I Y I E - - H K I K H Y H R P T Q N R K Q Y I S N N N I K S N . . . . . . 192259 TAACACTTAACAGGTGTCAACAACAAGTACCATGGCCATTGGGCACAACCCAAGCACATC - H L T G V N N K Y H G H W A Q P K H I N T - Q V S T T S T M A I G H N P S T S I T L N R C Q Q Q V P W P L G T T Q A H . . . . . . 192319 CATGAGGACTCAAGCCTCCACACCATACCCATTTGGGAAACAGGTTCATTAAATTGAGTA H E D S S L H T I P I W E T G S L N - V M R T Q A S T P Y P F G K Q V H - I E Y P - G L K P P H H T H L G N R F I K L S . . . . . . 192379 CAGTAACATAATTCAAATTCATTCTTTTTACTATCCTGGTGTTGGAACGTGACACTCCAA Q - H N S N S F F L L S W C W N V T L Q S N I I Q I H S F Y Y P G V G T - H S N T V T - F K F I L F T I L V L E R D T P . . . . . . 192439 TCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCATTAATACTACGTGTCGGTTTG S P N T T C R F V T P D P L I L R V G L P L I L R V G S - H P I H - Y Y V S V C I P - Y Y V S V R D T R S I N T T C R F . . . . . . 192499 TGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCATTAATACTGCG - H P I P - Y Y V S V R D T R S I N T A D T R S P N T T C R F V T P D P L I L R V T P D P L I L R V G S - H P I H - Y C . . . . . . 192559 TGTCGGTTCGTGACACCCAATCCATTATTACTACGTGTCGGTTCGTGACACCCGATCCCC C R F V T P N P L L L R V G S - H P I P V G S - H P I H Y Y Y V S V R D T R S P V S V R D T Q S I I T T C R F V T P D P . . . . . . 192619 TAACCTCATTCTTTTAGTTCATCAAACCTTCTTTTATACCAAGGCATCATTATTAACAAA - P H S F S S S N L L L Y Q G I I I N K N L I L L V H Q T F F Y T K A S L L T K L T S F F - F I K P S F I P R H H Y - Q . . 192679 GAGGGTTTTAGGTTT E G F R F R V L G R G F - V Maximal non-overlapping open reading frames (>= 64 codons): >C01HBa0216G16.1+_PGL-15_AGS-1_PPS_1 (192111 192323) (frame '0'; 210 bp, 70 residues) 1 RRRYVCCTPQ LTKRKHTSRG QYKTRVLSRY HRPTQNRKQY ISNNNIKSNI TLNRCQQQVP 61 WPLGTTQAHP - ... finished at: Tue Jul 25 10:57:06 2006