#Draft Tomato chromosome 9
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr9	1	1300000	1	N	1300000	contig	no	
S.lycopersicum-chr9	1300001	1344036	2	F	C09SLe0019J03.3	1	44036	+
S.lycopersicum-chr9	1344037	1400000	3	N	55964	contig	no	
S.lycopersicum-chr9	1400001	1509872	4	F	C09HBa0116C14.2	1	109872	+
S.lycopersicum-chr9	1509873	2300000	5	N	790128	contig	no	
S.lycopersicum-chr9	2300001	2411868	6	F	C09HBa0203J14.1	1	111868	+
S.lycopersicum-chr9	2411869	3750000	7	N	1338132	contig	no	
S.lycopersicum-chr9	3750001	3866478	8	F	C09HBa0168F14.3	1	116478	+
S.lycopersicum-chr9	3866479	5560000	9	N	1693522	contig	no	
S.lycopersicum-chr9	5560001	5686955	10	F	C09SLm0094A22.1	1	126955	+
S.lycopersicum-chr9	5686956	6000000	11	N	313045	contig	no	
S.lycopersicum-chr9	6000001	6125286	12	F	C09HBa0099P03.2	1	125286	+
S.lycopersicum-chr9	6125287	10700000	13	N	4574714	contig	no	
S.lycopersicum-chr9	10700001	10811462	14	F	C09HBa0165P17.1	1	111462	+
S.lycopersicum-chr9	10811463	11050000	15	N	238538	contig	no	
S.lycopersicum-chr9	11050001	11164526	16	F	C09HBa0109D11.1	1	114526	+
S.lycopersicum-chr9	11164527	11187593	17	F	C09HBa0226D21.1	90515	113581	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr9	11187594	60000000	18	N	48812407	contig	no	
S.lycopersicum-chr9	60000001	60057577	19	F	C09HBa0194K19.1	1	57577	+
S.lycopersicum-chr9	60057578	60107577	20	N	50000	contig	no	
S.lycopersicum-chr9	60107578	60177945	21	F	C09SLm0006M22.1	1	70368	+
S.lycopersicum-chr9	60177946	60227945	22	N	50000	contig	no	
S.lycopersicum-chr9	60227946	60328384	23	F	C09SLe0085A10.1	1	100439	+
S.lycopersicum-chr9	60328385	60378384	24	N	50000	contig	no	
S.lycopersicum-chr9	60378385	60482239	25	F	C09HBa0130D14.1	1	103855	+
S.lycopersicum-chr9	60482240	60532239	26	N	50000	contig	no	
S.lycopersicum-chr9	60532240	60633049	27	F	C09HBa0047I13.1	1	100810	+
S.lycopersicum-chr9	60633050	60683049	28	N	50000	contig	no	
S.lycopersicum-chr9	60683050	60773885	29	F	C09SLe0103M07.1	1	90836	+
S.lycopersicum-chr9	60773886	60823885	30	N	50000	contig	no	
S.lycopersicum-chr9	60823886	60858098	31	F	C09SLf0096M01.1	1	34213	+
S.lycopersicum-chr9	60858099	60908098	32	N	50000	contig	no	
S.lycopersicum-chr9	60908099	61017120	33	F	C09HBa0037P10.1	1	109022	+
S.lycopersicum-chr9	61017121	61067120	34	N	50000	contig	no	
S.lycopersicum-chr9	61067121	61197804	35	F	C09HBa0179M08.1	1	130684	+
S.lycopersicum-chr9	61197805	61247804	36	N	50000	contig	no	
S.lycopersicum-chr9	61247805	61288728	37	F	C09HBa0142I14.1	1	40924	+
S.lycopersicum-chr9	61288729	61338728	38	N	50000	contig	no	
S.lycopersicum-chr9	61338729	61490047	39	F	C09HBa0067J16.1	1	151319	+
S.lycopersicum-chr9	61490048	61540047	40	N	50000	contig	no	
S.lycopersicum-chr9	61540048	61669154	41	F	C09HBa0135N15.1	1	129107	+
S.lycopersicum-chr9	61669155	61719154	42	N	50000	contig	no	
S.lycopersicum-chr9	61719155	61838139	43	F	C09HBa0166O16.1	1	118985	-
S.lycopersicum-chr9	61838140	61930141	44	F	C09HBa0043M08.1	29738	121739	+
S.lycopersicum-chr9	61930142	61980141	45	N	50000	contig	no	
S.lycopersicum-chr9	61980142	62082515	46	F	C09HBa0080D01.1	1	102374	+
S.lycopersicum-chr9	62082516	62196261	47	F	C09HBa0170H21.1	14707	128452	-