#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181559	2	F	C02HBa0007F24.2	1	131559	+
S.lycopersicum-chr2	181560	231559	3	N	50000	contig	no	
S.lycopersicum-chr2	231560	393756	4	F	C02HBa0323C04.1	1	162197	+
S.lycopersicum-chr2	393757	1300000	5	N	906244	contig	no	
S.lycopersicum-chr2	1300001	1433012	6	F	C02HBa0303I24.1	1	133012	+
S.lycopersicum-chr2	1433013	1600000	7	N	166988	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119263	12	F	C02HBa0025N15.1	1	125151	+
S.lycopersicum-chr2	2119264	2169263	13	N	50000	contig	no	
S.lycopersicum-chr2	2169264	2283771	14	F	C02HBa0280E02.1	1	114508	+
S.lycopersicum-chr2	2283772	2500000	15	N	216229	contig	no	
S.lycopersicum-chr2	2500001	2634560	16	F	C02HBa0209K17.1	1	134560	+
S.lycopersicum-chr2	2634561	3300000	17	N	665440	contig	no	
S.lycopersicum-chr2	3300001	3417193	18	F	C02HBa0025A22.1	1	117193	+
S.lycopersicum-chr2	3417194	3600000	19	N	182807	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072170	24	F	C02HBa0155C04.2	1	118331	+
S.lycopersicum-chr2	4072171	4103652	25	F	C02HBa0168N10.1	75871	107352	-
S.lycopersicum-chr2	4103653	4164636	26	F	C02SLm0045L06.2	10412	71395	+
S.lycopersicum-chr2	4164637	4600000	27	N	435364	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138270	31	F	C02HBa0329G05.2	1	138270	+
S.lycopersicum-chr2	7138271	7188270	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188271	7268589	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268590	7318589	34	N	50000	contig	no	
S.lycopersicum-chr2	7318590	7365475	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365476	7415475	36	N	50000	contig	no	
S.lycopersicum-chr2	7415476	7658103	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658104	7708103	38	N	50000	contig	no	
S.lycopersicum-chr2	7708104	7836437	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836438	7886437	40	N	50000	contig	no	
S.lycopersicum-chr2	7886438	8066307	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066308	8116307	42	N	50000	contig	no	
S.lycopersicum-chr2	8116308	8272209	43	F	C02HBa0320D04.1	1	155902	+
S.lycopersicum-chr2	8272210	8322209	44	N	50000	contig	no	
S.lycopersicum-chr2	8322210	8462142	45	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8462143	8512142	46	N	50000	contig	no	
S.lycopersicum-chr2	8512143	8648381	47	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	8648382	8698381	48	N	50000	contig	no	
S.lycopersicum-chr2	8698382	8848820	49	F	C02HBa0060J03.1	1	150439	+
S.lycopersicum-chr2	8848821	8898820	50	N	50000	clone	yes	
S.lycopersicum-chr2	8898821	9028417	51	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9028418	9078417	52	N	50000	contig	no	
S.lycopersicum-chr2	9078418	9190505	53	F	C02HBa0009K06.1	1	112088	+
S.lycopersicum-chr2	9190506	9240505	54	N	50000	contig	no	
S.lycopersicum-chr2	9240506	9286101	55	F	C02HBa0213A01.1	1	45596	+
S.lycopersicum-chr2	9286102	9336101	56	N	50000	contig	no	
S.lycopersicum-chr2	9336102	9471393	57	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9471394	9521393	58	N	50000	clone	yes	
S.lycopersicum-chr2	9521394	9626701	59	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	9626702	9630490	60	F	C02SLm0097L01.1	33784	37572	-
S.lycopersicum-chr2	9630491	9680490	61	N	50000	clone	yes	
S.lycopersicum-chr2	9680491	9782586	62	F	C02HBa0030A21.1	1	102096	-
S.lycopersicum-chr2	9782587	9840021	63	F	C02HBa0074A14.1	53002	110436	+
S.lycopersicum-chr2	9840022	9931914	64	F	C02HBa0215M12.1	67874	159766	+
S.lycopersicum-chr2	9931915	9981914	65	N	50000	contig	no	
S.lycopersicum-chr2	9981915	10095643	66	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10095644	10145643	67	N	50000	contig	no	
S.lycopersicum-chr2	10145644	10293846	68	F	C02HBa0180C05.1	1	148203	-
S.lycopersicum-chr2	10293847	10396759	69	F	C02HBa0134G09.1	20927	123839	+
S.lycopersicum-chr2	10396760	10446759	70	N	50000	contig	no	
S.lycopersicum-chr2	10446760	10582590	71	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	10582591	10632590	72	N	50000	contig	no	
S.lycopersicum-chr2	10632591	10712095	73	F	C02SLm0014P22.1	1	79505	+
S.lycopersicum-chr2	10712096	10762095	74	N	50000	clone	yes	
S.lycopersicum-chr2	10762096	10859254	75	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	10859255	10954290	76	F	C02HBa0016A12.1	19554	114589	+
S.lycopersicum-chr2	10954291	11100000	77	N	145710	contig	no	
S.lycopersicum-chr2	11100001	11235577	78	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	11235578	11285577	79	N	50000	contig	no	
S.lycopersicum-chr2	11285578	11420690	80	F	C02HBa0108N03.2	1	135113	+
S.lycopersicum-chr2	11420691	11470690	81	N	50000	clone	yes	
S.lycopersicum-chr2	11470691	11578191	82	F	C02HBa0111M10.1	1	107501	+
S.lycopersicum-chr2	11578192	11688218	83	F	C02SLm0066K03.2	13050	123076	-
S.lycopersicum-chr2	11688219	12000000	84	N	311782	contig	no	
S.lycopersicum-chr2	12000001	12131021	85	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	12131022	13950000	86	N	1818979	contig	no	
S.lycopersicum-chr2	13950001	14082217	87	F	C02HBa0064B17.2	1	132217	+
S.lycopersicum-chr2	14082218	14164799	88	F	C02SLm0055O24.1	12207	94788	-
S.lycopersicum-chr2	14164800	14214799	89	N	50000	contig	no	
S.lycopersicum-chr2	14214800	14337460	90	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337461	14447468	91	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447469	14497468	92	N	50000	contig	no	
S.lycopersicum-chr2	14497469	14610770	93	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610771	14660770	94	N	50000	clone	yes	
S.lycopersicum-chr2	14660771	14811248	95	F	C02HBa0177F12.2	1	150478	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811249	60000000	96	N	45188752	contig	no	
S.lycopersicum-chr2	60000001	60075133	97	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60075134	60125133	98	N	50000	contig	no	
S.lycopersicum-chr2	60125134	60164000	99	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	60164001	60214000	100	N	50000	contig	no	
S.lycopersicum-chr2	60214001	60329597	101	F	C02HBa0155D20.1	1	115597	+
S.lycopersicum-chr2	60329598	60379597	102	N	50000	contig	no	
S.lycopersicum-chr2	60379598	60504121	103	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	60504122	60554121	104	N	50000	contig	no	
S.lycopersicum-chr2	60554122	60663388	105	F	C02HBa0228I09.1	1	109267	+
S.lycopersicum-chr2	60663389	60713388	106	N	50000	contig	no	
S.lycopersicum-chr2	60713389	60828436	107	F	C02SLm0049G16.1	1	115048	+
S.lycopersicum-chr2	60828437	60878436	108	N	50000	contig	no	
S.lycopersicum-chr2	60878437	61024368	109	F	C02HBa0090O01.1	1	145932	+
S.lycopersicum-chr2	61024369	61074368	110	N	50000	contig	no	
S.lycopersicum-chr2	61074369	61225530	111	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61225531	61275530	112	N	50000	contig	no	
S.lycopersicum-chr2	61275531	61359561	113	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61359562	61409561	114	N	50000	contig	no	
S.lycopersicum-chr2	61409562	61500912	115	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	61500913	61550912	116	N	50000	contig	no	
S.lycopersicum-chr2	61550913	61634251	117	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	61634252	61684251	118	N	50000	contig	no	
S.lycopersicum-chr2	61684252	61801980	119	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	61801981	61851980	120	N	50000	contig	no	
S.lycopersicum-chr2	61851981	61992248	121	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	61992249	62042248	122	N	50000	contig	no	
S.lycopersicum-chr2	62042249	62155040	123	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	62155041	62205040	124	N	50000	contig	no	
S.lycopersicum-chr2	62205041	62333803	125	F	C02SLm0020N19.1	1	128763	+
S.lycopersicum-chr2	62333804	62383803	126	N	50000	contig	no	
S.lycopersicum-chr2	62383804	62508539	127	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	62508540	62558539	128	N	50000	contig	no	
S.lycopersicum-chr2	62558540	62666284	129	F	C02SLe0033D19.1	1	107745	+
S.lycopersicum-chr2	62666285	62716284	130	N	50000	contig	no	
S.lycopersicum-chr2	62716285	62835785	131	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	62835786	62885785	132	N	50000	contig	no	
S.lycopersicum-chr2	62885786	62994580	133	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	62994581	63044580	134	N	50000	contig	no	
S.lycopersicum-chr2	63044581	63154791	135	F	C02SLe0042D07.1	1	110211	+
S.lycopersicum-chr2	63154792	63204791	136	N	50000	contig	no	
S.lycopersicum-chr2	63204792	63277060	137	F	C02HBa0257H21.1	1	72269	+
S.lycopersicum-chr2	63277061	63327060	138	N	50000	contig	no	
S.lycopersicum-chr2	63327061	63442343	139	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63442344	63492343	140	N	50000	contig	no	
S.lycopersicum-chr2	63492344	63615539	141	F	C02HBa0162I09.1	1	123196	+
S.lycopersicum-chr2	63615540	63665539	142	N	50000	contig	no	
S.lycopersicum-chr2	63665540	63780299	143	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	63780300	63830299	144	N	50000	contig	no	
S.lycopersicum-chr2	63830300	63928791	145	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	63928792	64084006	146	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	64084007	64134006	147	N	50000	contig	no	
S.lycopersicum-chr2	64134007	64232064	148	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	64232065	64346751	149	F	C02HBa0160F05.1	8001	122687	+
S.lycopersicum-chr2	64346752	64396751	150	N	50000	contig	no	
S.lycopersicum-chr2	64396752	64535531	151	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	64535532	64567937	152	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	64567938	64617937	153	N	50000	clone	yes	
S.lycopersicum-chr2	64617938	64712447	154	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	64712448	64822520	155	F	C02HBa0059M17.2	4964	115036	+