#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	212185	2	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	212186	262185	3	N	50000	contig	no	
S.lycopersicum-chr2	262186	393732	4	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119239	12	F	C02HBa0190N21.3	1	144100	+
S.lycopersicum-chr2	2119240	2169239	13	N	50000	contig	no	
S.lycopersicum-chr2	2169240	2283735	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283736	2333735	15	N	50000	contig	no	
S.lycopersicum-chr2	2333736	2455494	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455495	2505494	17	N	50000	contig	no	
S.lycopersicum-chr2	2505495	2640043	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640044	3300000	19	N	659957	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717504	22	F	C02HBa0101G09.2	1	117504	+
S.lycopersicum-chr2	3717505	3767504	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767505	3903828	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903829	3953828	25	N	50000	contig	no	
S.lycopersicum-chr2	3953829	4072140	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072141	4122140	27	N	50000	contig	no	
S.lycopersicum-chr2	4122141	4245324	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245325	4369975	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369976	4419975	30	N	50000	contig	no	
S.lycopersicum-chr2	4419976	4527307	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527308	4600000	32	N	72693	contig	no	
S.lycopersicum-chr2	4600001	4720889	33	F	C02HBa0072A04.2	1	120889	-
S.lycopersicum-chr2	4720890	4832831	34	F	C02HBa0066C13.2	24227	136168	+
S.lycopersicum-chr2	4832832	7000000	35	N	2167169	contig	no	
S.lycopersicum-chr2	7000001	7080319	36	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7080320	7130319	37	N	50000	clone	yes	
S.lycopersicum-chr2	7130320	7268579	38	F	C02HBa0329G05.3	1	138260	-
S.lycopersicum-chr2	7268580	7394000	39	F	C02HBa0161P02.2	13324	138744	+
S.lycopersicum-chr2	7394001	7444000	40	N	50000	contig	no	
S.lycopersicum-chr2	7444001	7490886	41	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7490887	7540886	42	N	50000	contig	no	
S.lycopersicum-chr2	7540887	7783514	43	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7783515	7833514	44	N	50000	contig	no	
S.lycopersicum-chr2	7833515	7948522	45	F	C02HBa0059M17.3	1	115008	+
S.lycopersicum-chr2	7948523	8019805	46	F	C02HBa0323A14.2	57047	128329	+
S.lycopersicum-chr2	8019806	8069805	47	N	50000	contig	no	
S.lycopersicum-chr2	8069806	8249675	48	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8249676	8299675	49	N	50000	contig	no	
S.lycopersicum-chr2	8299676	8381074	50	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8381075	8394705	51	F	C02SLm0021D12.1	76800	90430	+
S.lycopersicum-chr2	8394706	8443709	52	F	C02SLm0073G04.1	40082	89085	-
S.lycopersicum-chr2	8443710	8493709	53	N	50000	contig	no	
S.lycopersicum-chr2	8493710	8629504	54	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8629505	8708853	55	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8708854	8758853	56	N	50000	clone	yes	
S.lycopersicum-chr2	8758854	8914743	57	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8914744	9026727	58	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	9026728	9050415	59	F	C02HBa0175O20.1	122540	146227	-
S.lycopersicum-chr2	9050416	9127865	60	F	C02HBa0144P17.1	15143	92592	+
S.lycopersicum-chr2	9127866	9177865	61	N	50000	contig	no	
S.lycopersicum-chr2	9177866	9317798	62	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9317799	9367798	63	N	50000	contig	no	
S.lycopersicum-chr2	9367799	9504037	64	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9504038	9554037	65	N	50000	contig	no	
S.lycopersicum-chr2	9554038	9704463	66	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9704464	9754463	67	N	50000	clone	yes	
S.lycopersicum-chr2	9754464	9884048	68	F	C02HBa0159F19.3	1	129585	+
S.lycopersicum-chr2	9884049	9934048	69	N	50000	contig	no	
S.lycopersicum-chr2	9934049	10046122	70	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	10046123	10096122	71	N	50000	contig	no	
S.lycopersicum-chr2	10096123	10141706	72	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	10141707	10191706	73	N	50000	contig	no	
S.lycopersicum-chr2	10191707	10293478	74	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10293479	10351163	75	F	C02HBa0074A14.2	52672	110356	+
S.lycopersicum-chr2	10351164	10443129	76	F	C02HBa0215M12.1	67801	159766	+
S.lycopersicum-chr2	10443130	10493129	77	N	50000	contig	no	
S.lycopersicum-chr2	10493130	10606842	78	F	C02HBa0164H08.2	1	113713	+
S.lycopersicum-chr2	10606843	10656842	79	N	50000	contig	no	
S.lycopersicum-chr2	10656843	10768886	80	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10768887	10838136	81	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10838137	10965413	82	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	10965414	11015413	83	N	50000	contig	no	
S.lycopersicum-chr2	11015414	11218431	84	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11218432	11268431	85	N	50000	clone	yes	
S.lycopersicum-chr2	11268432	11404250	86	F	C02HBa0011A02.3	1	135819	+
S.lycopersicum-chr2	11404251	11454250	87	N	50000	clone	yes	
S.lycopersicum-chr2	11454251	11586026	88	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11586027	11652139	89	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	11652140	11702139	90	N	50000	clone	yes	
S.lycopersicum-chr2	11702140	11799290	91	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	11799291	11894324	92	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	11894325	11979942	93	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	11979943	12056466	94	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12056467	12106466	95	N	50000	contig	no	
S.lycopersicum-chr2	12106467	12194129	96	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12194130	12244129	97	N	50000	clone	yes	
S.lycopersicum-chr2	12244130	12386931	98	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12386932	12436931	99	N	50000	contig	no	
S.lycopersicum-chr2	12436932	12572496	100	F	C02HBa0046M08.3	1	135565	+
S.lycopersicum-chr2	12572497	12622496	101	N	50000	contig	no	
S.lycopersicum-chr2	12622497	12757595	102	F	C02HBa0108N03.3	1	135099	+
S.lycopersicum-chr2	12757596	12807595	103	N	50000	clone	yes	
S.lycopersicum-chr2	12807596	12954601	104	F	C02HBa0008G02.1	1	147006	+
S.lycopersicum-chr2	12954602	13030613	105	F	C02SLe0033D19.2	31722	107733	-
S.lycopersicum-chr2	13030614	13080613	106	N	50000	clone	yes	
S.lycopersicum-chr2	13080614	13188102	107	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	13188103	13298135	108	F	C02SLm0066K03.2	13044	123076	-
S.lycopersicum-chr2	13298136	13413025	109	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13413026	13463025	110	N	50000	contig	no	
S.lycopersicum-chr2	13463026	13520349	111	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13520350	13570349	112	N	50000	contig	no	
S.lycopersicum-chr2	13570350	13701370	113	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13701371	13950000	114	N	248630	contig	no	
S.lycopersicum-chr2	13950001	14082204	115	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	116	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	117	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	118	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447451	119	F	C02HBa0072B02.3	5378	115379	+
S.lycopersicum-chr2	14447452	14497451	120	N	50000	contig	no	
S.lycopersicum-chr2	14497452	14606045	121	F	C02HBa0032J10.4	1	108594	+
S.lycopersicum-chr2	14606046	14656045	122	N	50000	clone	yes	
S.lycopersicum-chr2	14656046	14806473	123	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14806474	60000000	124	N	45193527	contig	no	
S.lycopersicum-chr2	60000001	60087832	125	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	60087833	60137832	126	N	50000	contig	no	
S.lycopersicum-chr2	60137833	60235882	127	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	60235883	60285882	128	N	50000	contig	no	
S.lycopersicum-chr2	60285883	60396081	129	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60396082	60446081	130	N	50000	contig	no	
S.lycopersicum-chr2	60446082	60586337	131	F	C02HBa0172G12.2	1	140256	+
S.lycopersicum-chr2	60586338	60636337	132	N	50000	contig	no	
S.lycopersicum-chr2	60636338	60755838	133	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	60755839	60805838	134	N	50000	contig	no	
S.lycopersicum-chr2	60805839	60964150	135	F	C02SLm0132H19.1	1	158312	+
S.lycopersicum-chr2	60964151	61014150	136	N	50000	contig	no	
S.lycopersicum-chr2	61014151	61122937	137	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	61122938	61172937	138	N	50000	contig	no	
S.lycopersicum-chr2	61172938	61248070	139	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	61248071	61298070	140	N	50000	contig	no	
S.lycopersicum-chr2	61298071	61408129	141	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	61408130	61458129	142	N	50000	contig	no	
S.lycopersicum-chr2	61458130	61582865	143	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61582866	61632865	144	N	50000	contig	no	
S.lycopersicum-chr2	61632866	61716896	145	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61716897	61766896	146	N	50000	contig	no	
S.lycopersicum-chr2	61766897	61891328	147	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	61891329	61941328	148	N	50000	contig	no	
S.lycopersicum-chr2	61941329	62056088	149	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	62056089	62106088	150	N	50000	contig	no	
S.lycopersicum-chr2	62106089	62168253	151	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	62168254	62218253	152	N	50000	contig	no	
S.lycopersicum-chr2	62218254	62347241	153	F	C02SLe0054B08.1	1	128988	+
S.lycopersicum-chr2	62347242	62397241	154	N	50000	contig	no	
S.lycopersicum-chr2	62397242	62436108	155	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	62436109	62486108	156	N	50000	contig	no	
S.lycopersicum-chr2	62486109	62635512	157	F	C02HBa0115F06.1	1	149404	+
S.lycopersicum-chr2	62635513	62685512	158	N	50000	contig	no	
S.lycopersicum-chr2	62685513	62800795	159	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62800796	62850795	160	N	50000	contig	no	
S.lycopersicum-chr2	62850796	62962693	161	F	C02HBa0054K23.1	1	111898	+
S.lycopersicum-chr2	62962694	63012693	162	N	50000	contig	no	
S.lycopersicum-chr2	63012694	63104044	163	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	63104045	63154044	164	N	50000	contig	no	
S.lycopersicum-chr2	63154045	63221449	165	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	63221450	63271449	166	N	50000	contig	no	
S.lycopersicum-chr2	63271450	63363028	167	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	63363029	63413028	168	N	50000	contig	no	
S.lycopersicum-chr2	63413029	63484423	169	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	63484424	63534423	170	N	50000	contig	no	
S.lycopersicum-chr2	63534424	63656414	171	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	63656415	63706414	172	N	50000	contig	no	
S.lycopersicum-chr2	63706415	63821411	173	F	C02SLe0065H17.1	1	114997	+
S.lycopersicum-chr2	63821412	63871411	174	N	50000	contig	no	
S.lycopersicum-chr2	63871412	63965921	175	F	C02SLe0075O22.1	1	94510	+
S.lycopersicum-chr2	63965922	64015921	176	N	50000	contig	no	
S.lycopersicum-chr2	64015922	64099252	177	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	64099253	64149252	178	N	50000	contig	no	
S.lycopersicum-chr2	64149253	64278006	179	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	64278007	64328006	180	N	50000	contig	no	
S.lycopersicum-chr2	64328007	64440798	181	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	64440799	64490798	182	N	50000	contig	no	
S.lycopersicum-chr2	64490799	64581477	183	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	64581478	64631477	184	N	50000	contig	no	
S.lycopersicum-chr2	64631478	64773782	185	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	64773783	64823782	186	N	50000	contig	no	
S.lycopersicum-chr2	64823783	64985899	187	F	C02SLm0127N23.1	1	162117	+
S.lycopersicum-chr2	64985900	65035899	188	N	50000	contig	no	
S.lycopersicum-chr2	65035900	65158574	189	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	65158575	65208574	190	N	50000	contig	no	
S.lycopersicum-chr2	65208575	65271035	191	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	65271036	65321035	192	N	50000	contig	no	
S.lycopersicum-chr2	65321036	65453689	193	F	C02HBa0031A21.2	1	132654	+
S.lycopersicum-chr2	65453690	65503689	194	N	50000	contig	no	
S.lycopersicum-chr2	65503690	65537308	195	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	65537309	65587308	196	N	50000	contig	no	
S.lycopersicum-chr2	65587309	65711789	197	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	65711790	65761789	198	N	50000	contig	no	
S.lycopersicum-chr2	65761790	65897069	199	F	C02HBa0023N04.3	1	135280	+
S.lycopersicum-chr2	65897070	65947069	200	N	50000	contig	no	
S.lycopersicum-chr2	65947070	66019326	201	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	66019327	66069326	202	N	50000	contig	no	
S.lycopersicum-chr2	66069327	66180842	203	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	66180843	66230842	204	N	50000	contig	no	
S.lycopersicum-chr2	66230843	66382004	205	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	66382005	66432004	206	N	50000	contig	no	
S.lycopersicum-chr2	66432005	66521798	207	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	66521799	66571798	208	N	50000	contig	no	
S.lycopersicum-chr2	66571799	66717718	209	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	66717719	66767718	210	N	50000	contig	no	
S.lycopersicum-chr2	66767719	66883303	211	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	66883304	66974278	212	F	C02SLe0053H21.1	56220	147194	-
S.lycopersicum-chr2	66974279	67024278	213	N	50000	contig	no	
S.lycopersicum-chr2	67024279	67122770	214	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	67122771	67277981	215	F	C02HBa0155E05.3	3838	159048	+
S.lycopersicum-chr2	67277982	67327981	216	N	50000	contig	no	
S.lycopersicum-chr2	67327982	67452059	217	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	67452060	67506079	218	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	67506080	67556079	219	N	50000	contig	no	
S.lycopersicum-chr2	67556080	67673808	220	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	67673809	67723808	221	N	50000	clone	yes	
S.lycopersicum-chr2	67723809	67849147	222	F	C02SLe0031D11.1	1	125339	+
S.lycopersicum-chr2	67849148	67899147	223	N	50000	contig	no	
S.lycopersicum-chr2	67899148	68010029	224	F	C02HBa0116F10.1	1	110882	+
S.lycopersicum-chr2	68010030	68060029	225	N	50000	clone	yes	
S.lycopersicum-chr2	68060030	68239933	226	F	C02SLm0128E12.1	1	179904	+
S.lycopersicum-chr2	68239934	68263599	227	F	C02HBa0106H06.1	81643	105308	+
S.lycopersicum-chr2	68263600	68267384	228	F	C02SLm0097L01.2	33780	37564	-