#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4245335	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245336	4369986	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369987	4419986	30	N	50000	contig	no	
S.lycopersicum-chr2	4419987	4527318	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527319	4600000	32	N	72682	contig	no	
S.lycopersicum-chr2	4600001	4720940	33	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	34	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	35	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	36	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	37	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	38	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	39	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	40	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	41	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	42	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	43	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	44	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	45	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	46	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	47	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8197696	48	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8197697	8211327	49	F	C02SLm0021D12.1	76800	90430	+
S.lycopersicum-chr2	8211328	8260331	50	F	C02SLm0073G04.1	40082	89085	-
S.lycopersicum-chr2	8260332	8310331	51	N	50000	contig	no	
S.lycopersicum-chr2	8310332	8446126	52	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8446127	8525475	53	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8525476	8575475	54	N	50000	clone	yes	
S.lycopersicum-chr2	8575476	8731365	55	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8731366	8843349	56	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	8843350	8867038	57	F	C02HBa0175O20.1	122540	146228	-
S.lycopersicum-chr2	8867039	8944487	58	F	C02HBa0144P17.1	15144	92592	+
S.lycopersicum-chr2	8944488	8994487	59	N	50000	contig	no	
S.lycopersicum-chr2	8994488	9134420	60	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9134421	9184420	61	N	50000	contig	no	
S.lycopersicum-chr2	9184421	9320659	62	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9320660	9370659	63	N	50000	contig	no	
S.lycopersicum-chr2	9370660	9521085	64	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9521086	9571085	65	N	50000	clone	yes	
S.lycopersicum-chr2	9571086	9700682	66	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9700683	9750682	67	N	50000	contig	no	
S.lycopersicum-chr2	9750683	9862756	68	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9862757	9912756	69	N	50000	contig	no	
S.lycopersicum-chr2	9912757	9958340	70	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9958341	10008340	71	N	50000	contig	no	
S.lycopersicum-chr2	10008341	10143632	72	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	10143633	10193632	73	N	50000	clone	yes	
S.lycopersicum-chr2	10193633	10298940	74	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10298941	10390309	75	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10390310	10440309	76	N	50000	clone	yes	
S.lycopersicum-chr2	10440310	10477873	77	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10477874	10647664	78	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10647665	10697664	79	N	50000	clone	yes	
S.lycopersicum-chr2	10697665	10799436	80	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10799437	10857123	81	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10857124	10949087	82	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10949088	10999087	83	N	50000	contig	no	
S.lycopersicum-chr2	10999088	11112816	84	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	11112817	11162816	85	N	50000	contig	no	
S.lycopersicum-chr2	11162817	11274860	86	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11274861	11344110	87	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11344111	11471387	88	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11471388	11521387	89	N	50000	contig	no	
S.lycopersicum-chr2	11521388	11724405	90	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11724406	11774405	91	N	50000	clone	yes	
S.lycopersicum-chr2	11774406	11910236	92	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11910237	11960236	93	N	50000	clone	yes	
S.lycopersicum-chr2	11960237	12092012	94	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	12092013	12158125	95	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	12158126	12208125	96	N	50000	clone	yes	
S.lycopersicum-chr2	12208126	12305276	97	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12305277	12400310	98	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12400311	12485928	99	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12485929	12562452	100	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12562453	12612452	101	N	50000	contig	no	
S.lycopersicum-chr2	12612453	12700115	102	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12700116	12750115	103	N	50000	clone	yes	
S.lycopersicum-chr2	12750116	12892917	104	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12892918	12942917	105	N	50000	contig	no	
S.lycopersicum-chr2	12942918	13078494	106	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	13078495	13128494	107	N	50000	contig	no	
S.lycopersicum-chr2	13128495	13236227	108	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	13236228	13289704	109	F	C02HBa0111M10.2	54012	107488	+
S.lycopersicum-chr2	13289705	13351513	110	F	C02HBa0008G02.1	85198	147006	-
S.lycopersicum-chr2	13351514	13399737	111	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	13399738	13514627	112	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13514628	13564627	113	N	50000	contig	no	
S.lycopersicum-chr2	13564628	13621951	114	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13621952	13671951	115	N	50000	contig	no	
S.lycopersicum-chr2	13671952	13802972	116	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13802973	13950000	117	N	147028	contig	no	
S.lycopersicum-chr2	13950001	14082204	118	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	119	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	120	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	121	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	122	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	123	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	124	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	125	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	126	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	127	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60114760	128	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	60114761	60164760	129	N	50000	contig	no	
S.lycopersicum-chr2	60164761	60227221	130	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	60227222	60277221	131	N	50000	contig	no	
S.lycopersicum-chr2	60277222	60367900	132	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60367901	60417900	133	N	50000	contig	no	
S.lycopersicum-chr2	60417901	60542332	134	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	60542333	60592332	135	N	50000	contig	no	
S.lycopersicum-chr2	60592333	60738252	136	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	60738253	60788252	137	N	50000	contig	no	
S.lycopersicum-chr2	60788253	60912733	138	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	60912734	60962733	139	N	50000	contig	no	
S.lycopersicum-chr2	60962734	61034990	140	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	61034991	61084990	141	N	50000	contig	no	
S.lycopersicum-chr2	61084991	61169021	142	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61169022	61219021	143	N	50000	contig	no	
S.lycopersicum-chr2	61219022	61341696	144	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	61341697	61391696	145	N	50000	contig	no	
S.lycopersicum-chr2	61391697	61520450	146	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	61520451	61570450	147	N	50000	contig	no	
S.lycopersicum-chr2	61570451	61637855	148	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	61637856	61687855	149	N	50000	contig	no	
S.lycopersicum-chr2	61687856	61775687	150	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	61775688	61825687	151	N	50000	contig	no	
S.lycopersicum-chr2	61825688	61950423	152	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61950424	62000423	153	N	50000	contig	no	
S.lycopersicum-chr2	62000424	62083754	154	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	62083755	62133754	155	N	50000	contig	no	
S.lycopersicum-chr2	62133755	62243953	156	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	62243954	62293953	157	N	50000	contig	no	
S.lycopersicum-chr2	62293954	62434221	158	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	62434222	62484221	159	N	50000	contig	no	
S.lycopersicum-chr2	62484222	62582271	160	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	62582272	62632271	161	N	50000	contig	no	
S.lycopersicum-chr2	62632272	62742330	162	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	62742331	62792330	163	N	50000	contig	no	
S.lycopersicum-chr2	62792331	62907613	164	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62907614	62957613	165	N	50000	contig	no	
S.lycopersicum-chr2	62957614	63029008	166	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	63029009	63079008	167	N	50000	contig	no	
S.lycopersicum-chr2	63079009	63154141	168	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	63154142	63204141	169	N	50000	contig	no	
S.lycopersicum-chr2	63204142	63243008	170	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	63243009	63293008	171	N	50000	contig	no	
S.lycopersicum-chr2	63293009	63414999	172	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	63415000	63464999	173	N	50000	contig	no	
S.lycopersicum-chr2	63465000	63584500	174	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	63584501	63634500	175	N	50000	contig	no	
S.lycopersicum-chr2	63634501	63696665	176	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	63696666	63746665	177	N	50000	contig	no	
S.lycopersicum-chr2	63746666	63855452	178	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	63855453	63905452	179	N	50000	contig	no	
S.lycopersicum-chr2	63905453	63995246	180	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	63995247	64045246	181	N	50000	contig	no	
S.lycopersicum-chr2	64045247	64078865	182	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	64078866	64128865	183	N	50000	contig	no	
S.lycopersicum-chr2	64128866	64220216	184	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	64220217	64270216	185	N	50000	contig	no	
S.lycopersicum-chr2	64270217	64381732	186	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	64381733	64431732	187	N	50000	contig	no	
S.lycopersicum-chr2	64431733	64523311	188	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	64523312	64573311	189	N	50000	contig	no	
S.lycopersicum-chr2	64573312	64724473	190	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	64724474	64774473	191	N	50000	contig	no	
S.lycopersicum-chr2	64774474	64916778	192	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	64916779	64966778	193	N	50000	contig	no	
S.lycopersicum-chr2	64966779	65079570	194	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	65079571	65129570	195	N	50000	contig	no	
S.lycopersicum-chr2	65129571	65245162	196	F	C02HBa0155D20.2	1	115592	+
S.lycopersicum-chr2	65245163	65336132	197	F	C02SLe0053H21.1	56227	147196	-
S.lycopersicum-chr2	65336133	65386132	198	N	50000	contig	no	
S.lycopersicum-chr2	65386133	65510210	199	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	65510211	65564230	200	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	65564231	65614230	201	N	50000	contig	no	
S.lycopersicum-chr2	65614231	65712722	202	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65712723	65867937	203	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	65867938	65917937	204	N	50000	contig	no	
S.lycopersicum-chr2	65917938	66035666	205	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	66035667	66085666	206	N	50000	clone	yes	
S.lycopersicum-chr2	66085667	66211005	207	F	C02SLe0031D11.1	1	125339	+
S.lycopersicum-chr2	66211006	66261005	208	N	50000	contig	no	
S.lycopersicum-chr2	66261006	66399785	209	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	66399786	66432191	210	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	66432192	66482191	211	N	50000	clone	yes	
S.lycopersicum-chr2	66482192	66576701	212	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	66576702	66686774	213	F	C02HBa0059M17.2	4964	115036	+