BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) 12 sequences; 2,753,501,687 total letters Query= Untitled_sequence Length=1000 Score E Sequences producing significant alignments: (Bits) Value Pepper1.55ch10 1821 0.0 >Pepper1.55ch10 Length=233593809 Score = 1821 bits (986), Expect = 0.0 Identities = 997/1002 (99%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 1 TAGTCCCGCAAAGCAAACGTCCCCTTAATTTATTAAACTTTAATTTATTAAACTACCCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572011 TAGTCCCGCAAAGCAAACGTCCCCTTAATTTATTAAACTTTAATTTATTAAACTACCCAA 11572070 Query 61 TCTTTCAAAGTTACCCTCCTAGAATCCATCATCACTACCTACCCCCCCC--TCCTCCTCC 118 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11572071 TCTTTCAAAGTTACCCTCCTAGAATCCATCATCACTACCTACCCCCCCCTNTCCTCCTCC 11572130 Query 119 TCTCCATTTTCATCAACCAAGTAGGAGGGGTCTTTCTCTGTAGCTTCAAAGAATCAAATA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572131 TCTCCATTTTCATCAACCAAGTAGGAGGGGTCTTTCTCTGTAGCTTCAAAGAATCAAATA 11572190 Query 179 CATACATTGAGTGCAACAATATACTAACCAAGACTTCATTTTCACTACGCACCCCCACCC 238 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572191 CATACATAGAGTGCAACAATATACTAACCAAGACTTCATTTTCACTACGCACCCCCACCC 11572250 Query 239 CTCCATTTTCATCAACCAAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572251 CTCCATTTTCATCAACCAAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGTC 11572310 Query 299 GTTCTCTTTTTCTTGAATTATACTGTTCACCTCTTTCAGGCAAAATATCGAACACATAGT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572311 GTTCTCTTTTTCTTGAATTATACTGTTCACCTCTTTCAGGCAAAATATCGAACACATAGT 11572370 Query 359 GTGAAACAATCAAACTAACCACCTGGAATTCTTCATCACTATCCCCAACTCCATTTTCAT 418 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572371 GTGAAGCAATCAAACTAACCACCTGGAATTCTTCATCACTATCCCCAACTCCATTTTCAT 11572430 Query 419 CAACCAAAGTAAAGGGTAGGGTCTTATTGGAGCAAAGAATAACTGGGTTATTCTCTGTTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572431 CAACCAAAGTAAAGGGTAGGGTCTTATTGGAGCAAAGAATAACTGGGTTATTCTCTGTTT 11572490 Query 479 CTTCAACTGTAGCTTCAATCTCTTTGTTCAGTTCATTGAGACAAAATATCAAACACATAG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572491 CTTCAACTGTAGCTTCAATCTCTTTGTTCAGTTCATTGAGACAAAATATCAAACACATAG 11572550 Query 539 AGTGCAACAATAAGTTACCCACCTCCAATTCTTCATTACTGCCTCCATTTTTATCAACAC 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572551 AGTGCAACAATAAGTTACCCACCTCCAATTCTTCATTACTGCCTCCATTTTTATCAACAC 11572610 Query 599 AGTAAAGGATAGAGTATTGTGAACGAAACAAAAAATGGGTCTTTCTCTGTTTCTTGAACT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572611 AGTAAAGGATAGAGTATTGTGAACGAAACAAAAAATGGGTCTTTCTCTGTTTCTTGAACT 11572670 Query 659 ATAGAAGACTATAGCTTCAATCTCTTTGTTCAGTTTTAGGCAATATATCAAACACATAGA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572671 ATAGAAGACTATAGCTTCAATCTCTTTGTTCAGTTTTAGGCAATATATCAAACACATAGA 11572730 Query 719 GTGCAACAATTAACTAACCAACTCTTCTCATTGAACCCCCCTCCATTTTCATCTACCAAG 778 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 11572731 GTGCAACAATTAACTAACCAACTCTTCTCATTGAACCCCACTCCATTTTCATCTACCAAG 11572790 Query 779 TAAAGGGTAGAGTCTTGCTGAGGACAAAACCACTGGGTCTTCCTCCGTTTCTTGAATTGT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572791 TAAAGGGTAGAGTCTTGCTGAGGACAAAACCACTGGGTCTTCCTCCGTTTCTTGAATTGT 11572850 Query 839 TGCATTTTTTCTTTCAGGCAAACTATCAAACACATAGAGTGCAACGATAATCTAGTTTAA 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572851 TGCATTTTTTCTTTCAGGCAAACTATCAAACACATAGAGTGCAACGATAATCTAGTTTAA 11572910 Query 899 AAACCTCACATTTTGGTCCAACTGGTGATGATATTACTCAATGGGAAGACGACAAATTAA 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11572911 AAACCTCACATTTTGGTCCAACTGGTGATGATATTACTCAATGGGAAGACGACAAATTAA 11572970 Query 959 TGGTGCTGTTGATTTATGGGGAATTGTGCCGTCACCAAGTGT 1000 |||||||||||||||||||||||||||||||||||||||||| Sbjct 11572971 TGGTGCTGTTGATTTATGGGGAATTGTGCCGTCACCAAGTGT 11573012 Score = 189 bits (102), Expect = 2e-45 Identities = 343/450 (76%), Gaps = 54/450 (12%) Strand=Plus/Plus Query 239 CTCCATTTTCATCAACC-AAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGT 297 ||||||||||||||||| ||||||||||||| ||||| ||||| |||||| || ||||| Sbjct 11572419 CTCCATTTTCATCAACCAAAGTAAAGGGTAGGGTCTTATTGGAGCAAAGAATAACTGGGT 11572478 Query 298 CGTTCTCTTTTTCTTGAA-T-TA---T--A---C--TGTTCACCTCTTTCAGGCAAAATA 345 |||||| |||||| || | || | | | |||||| || || || ||||||| Sbjct 11572479 TATTCTCTGTTTCTTCAACTGTAGCTTCAATCTCTTTGTTCAGTTCATTGAGACAAAATA 11572538 Query 346 TCGAACACATAGTGTGAAACAATCAAACTAACCACCTGGAATTCTTCATCACTATCCCCA 405 || ||||||||| ||| |||||| || || |||||| |||||||||| || | | Sbjct 11572539 TCAAACACATAGAGTGCAACAAT-AAGTTACCCACCTCCAATTCTTCAT---TA-CTGC- 11572592 Query 406 ACTCCATTTTCATCAACCAAAGTAAAGGGTAGGGTCTTATTG-GAGC-AAAGAATAACTG 463 ||||||||| ||||| || |||||||| ||| || |||| || | ||| || || || Sbjct 11572593 -CTCCATTTTTATCAA-CACAGTAAAGGATAGAGT---ATTGTGAACGAAACAAAAAATG 11572647 Query 464 GGTTATTCTCTGTTTCTT---C------A-ACTGTAGCTTCAATCTCTTTGTTCAGTTCA 513 ||| ||||||||||||| | | ||| |||||||||||||||||||||||| Sbjct 11572648 GGTCTTTCTCTGTTTCTTGAACTATAGAAGACTATAGCTTCAATCTCTTTGTTCAGTT-- 11572705 Query 514 TTGAGACAAAATATCAAACACATAGAGTGCAACAAT-AAGTTACCCACCTCCAATTCTTC 572 || || ||| |||||||||||||||||||||||||| || | ||| || || |||| | Sbjct 11572706 TT-AGGCAATATATCAAACACATAGAGTGCAACAATTAACTAACCAAC-TC---TTCT-C 11572759 Query 573 ATT-A-CTGC-CTCCATTTTTATCAACACAGTAAAGGATAGAGTATTG-TGAACGAAACA 628 ||| | | | ||||||||| ||| || |||||||| |||||| ||| ||| || || Sbjct 11572760 ATTGAACCCCACTCCATTTTCATCTACCAAGTAAAGGGTAGAGTCTTGCTGAG-GA--CA 11572816 Query 629 AAAA-A-TGGGTCTTTCTCTGTTTCTTGAA 656 ||| | |||||||| ||| |||||||||| Sbjct 11572817 AAACCACTGGGTCTTCCTCCGTTTCTTGAA 11572846 Score = 183 bits (99), Expect = 1e-43 Identities = 342/450 (76%), Gaps = 54/450 (12%) Strand=Plus/Plus Query 407 CTCCATTTTCATCAACCAAAGTAAAGGGTAGGGTCTTATTGGAGCAAAGAATAACTGGGT 466 ||||||||||||||||| ||||||||||||| ||||| ||||| |||||| || ||||| Sbjct 11572251 CTCCATTTTCATCAACC-AAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGT 11572309 Query 467 TATTCTCTGTTTCTTCAACTGTAGCTTCAATCTCTTTGTTCAGTTCATTGAGACAAAATA 526 |||||| |||||| || | || | | | |||||| || || || ||||||| Sbjct 11572310 CGTTCTCTTTTTCTTGAA-T-TA---T--A---C--TGTTCACCTCTTTCAGGCAAAATA 11572357 Query 527 TCAAACACATAGAGTGCAACAAT-AAGTTACCCACCTCCAATTCTTCAT---TA-CTGC- 580 || ||||||||| ||| | |||| || || |||||| |||||||||| || | | Sbjct 11572358 TCGAACACATAGTGTGAAGCAATCAAACTAACCACCTGGAATTCTTCATCACTATCCCCA 11572417 Query 581 -CTCCATTTTTATCAA-CACAGTAAAGGATAGAGT---ATTGTGAACGAAACAAAAAATG 635 ||||||||| ||||| || |||||||| ||| || |||| || | ||| || || || Sbjct 11572418 ACTCCATTTTCATCAACCAAAGTAAAGGGTAGGGTCTTATTG-GAGC-AAAGAATAACTG 11572475 Query 636 GGTCTTTCTCTGTTTCTTGAACTATAGAAGACTATAGCTTCAATCTCTTTGTTCAGTT-- 693 ||| ||||||||||||| | | ||| |||||||||||||||||||||||| Sbjct 11572476 GGTTATTCTCTGTTTCTT---C------A-ACTGTAGCTTCAATCTCTTTGTTCAGTTCA 11572525 Query 694 TT-AGGCAATATATCAAACACATAGAGTGCAACAATTAACTAACCAAC-TC---TTCT-C 747 || || ||| |||||||||||||||||||||||||| || | ||| || || |||| | Sbjct 11572526 TTGAGACAAAATATCAAACACATAGAGTGCAACAAT-AAGTTACCCACCTCCAATTCTTC 11572584 Query 748 ATTGAACCCCCCTCCATTTTCATCTACCAAGTAAAGGGTAGAGTCTTGCTGAG-GA--CA 804 ||| | | |||||||||| ||| || |||||||| |||||| ||| ||| || || Sbjct 11572585 ATT-A-CTG-CCTCCATTTTTATCAACACAGTAAAGGATAGAGTATTG-TGAACGAAACA 11572640 Query 805 AAACCACTGGGTCTTCCTCCGTTTCTTGAA 834 ||| | |||||||| ||| |||||||||| Sbjct 11572641 AAAA-A-TGGGTCTTTCTCTGTTTCTTGAA 11572668 Score = 110 bits (59), Expect = 2e-21 Identities = 250/334 (75%), Gaps = 45/334 (13%) Strand=Plus/Plus Query 238 CCTCCATTTTCATCAACCAAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGT 297 |||||||||| |||||| |||||||| |||||| ||| || |||||| ||||| ||||| Sbjct 11572592 CCTCCATTTTTATCAACACAGTAAAGGATAGAGTATTG-TGAACGAAACAAAAAATGGGT 11572650 Query 298 CGTTCTCTTTTTCTTGAA-T-T---ATAC--T-G-TTC-A-C-C-----TC--TTTCAGG 338 | |||||| ||||||||| | | | || | | ||| | | | || ||| ||| Sbjct 11572651 CTTTCTCTGTTTCTTGAACTATAGAAGACTATAGCTTCAATCTCTTTGTTCAGTTTTAGG 11572710 Query 339 CAAAATATCGAACACATAGTGTGAAACAATCAAACTAACCACCTGGAATTCTTCATCACT 398 ||| ||||| ||||||||| ||| |||||| |||| | ||| || ||||| ||| | Sbjct 11572711 CAATATATCAAACACATAGAGTGCAACAAT-TAACT-A--ACC---AACTCTTC-TCATT 11572762 Query 399 -ATCCCCAACTCCATTTTCATCAACCAAAGTAAAGGGTAGGGTCTTATTGGAGCAAAGAA 457 | |||| |||||||||||||| ||| ||||||||||||| ||||| || || | | || Sbjct 11572763 GAACCCC-ACTCCATTTTCATCTACC-AAGTAAAGGGTAGAGTCTTGCTG-AGGACAAAA 11572819 Query 458 TAACTGGGTTATTCTCTGTTTCTTCAACTGTAGCTTCAATCTCTTTGTTCAGTTCATTGA 517 ||||||| | ||| ||||||| || ||| || | | | ||| | | |||| | Sbjct 11572820 CCACTGGGTCTTCCTCCGTTTCTTGAATTGTTGC---A-T-T-TTT-T-CT-TTCA--G- 11572867 Query 518 GACAAAATATCAAACACATAGAGTGCAACAATAA 551 | |||| |||||||||||||||||||||| |||| Sbjct 11572868 G-CAAACTATCAAACACATAGAGTGCAACGATAA 11572900 Score = 100 bits (54), Expect = 1e-18 Identities = 141/181 (78%), Gaps = 14/181 (8%) Strand=Plus/Plus Query 712 ACATAGAGTGCAACAATTAACTAACC-A-AC-TC-TTCTCA-T-TG-A--ACC-CCCCTC 761 ||||||||||||||||| ||||||| | || || || ||| | | | || |||||| Sbjct 11572194 ACATAGAGTGCAACAATATACTAACCAAGACTTCATTTTCACTACGCACCCCCACCCCTC 11572253 Query 762 CATTTTCATCTACCAAGTAAAGGGTAGAGTCTTGCTG-AGGACAAAACCACTGGGTCTTC 820 |||||||||| ||||||||||||||||||||||| || | || | || | |||||| | Sbjct 11572254 CATTTTCATCAACCAAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGTCGTT 11572313 Query 821 CTCCGTTTCTTGAATTGTTGCATTTTT--TCTTTCAGGCAAACTATCAAACACATAGAGT 878 ||| ||||||||||| | | || ||||||||||||| |||| ||||||||| || Sbjct 11572314 CTCTTTTTCTTGAATTATA-CTGTTCACCTCTTTCAGGCAAAATATCGAACACATAGTGT 11572372 Query 879 G 879 | Sbjct 11572373 G 11572373 Score = 97.1 bits (52), Expect = 2e-17 Identities = 150/195 (77%), Gaps = 15/195 (8%) Strand=Plus/Plus Query 182 ACATTGAGTGCAACAATATACTAACCAAGACTTCATTTTCACTACGCACCCCCACCCCTC 241 |||| |||||||||||| ||||||| | || || || ||| | | | ||||| ||| Sbjct 11572724 ACATAGAGTGCAACAATTAACTAACC-A-AC-TC-TTCTCA-T-TG-AACCCCA---CTC 11572773 Query 242 CATTTTCATCAACCAAGTAAAGGGTAGAGTCTTGTTGGACGAAAGAAAAATTGGGTCGTT 301 |||||||||| ||||||||||||||||||||||| || | || | || | |||||| | Sbjct 11572774 CATTTTCATCTACCAAGTAAAGGGTAGAGTCTTGCTG-AGGACAAAACCACTGGGTCTTC 11572832 Query 302 CTCTTTTTCTTGAATTATA-CTGTTCACCTCTTTCAGGCAAAATATCGAACACATAGTGT 360 ||| ||||||||||| | | || ||||||||||||| |||| ||||||||| || Sbjct 11572833 CTCCGTTTCTTGAATTGTTGCATTTTT--TCTTTCAGGCAAACTATCAAACACATAGAGT 11572890 Query 361 GAAACAATCAAACTA 375 | ||| || || ||| Sbjct 11572891 GCAACGAT-AATCTA 11572904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 2670896287190 Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) Posted date: Mar 21, 2024 3:36 PM Number of letters in database: 2,753,501,687 Number of sequences in database: 12 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5