BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Tomato Genome protein sequences (ITAG release 2.40) 34,725 sequences; 11,955,943 total letters Query= AT1G72830.1 Length=340 Score E Sequences producing significant alignments: (Bits) Value Solyc08g062210.2Nuclear transcription factor Y subunit A-3 IPR001... 172 5e-51 Solyc03g121940.2Nuclear transcription factor Y subunit A-3 IPR001... 143 5e-41 Solyc12g009050.1Nuclear transcription factor Y subunit A-3 IPR001... 142 3e-40 Solyc01g087240.2Nuclear transcription factor Y subunit A-1 IPR001... 123 1e-32 Solyc01g008490.2Nuclear transcription factor Y subunit A-1 IPR001... 120 1e-31 Solyc02g069860.2Nuclear transcription factor Y subunit A-7 IPR001... 112 1e-29 Solyc11g065700.1Nuclear transcription factor Y subunit A-1 IPR001... 111 2e-28 Solyc01g006930.2Nuclear transcription factor Y subunit A-2 IPR001... 105 6e-26 Solyc10g079150.1Nuclear transcription factor Y subunit A-1 IPR001... 88.6 1e-20 Solyc10g081840.1Nuclear transcription factor Y subunit A-1 IPR001... 76.3 9e-17 >Solyc08g062210.2 Nuclear transcription factor Y subunit A-3 IPR001289 CCAAT-binding transcription factor, subunit B Length=325 Score = 172 bits (435), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 114/267 (43%), Positives = 156/267 (58%), Gaps = 18/267 (7%) Query 60 QISFQDQDSSSTQSTGQSYTEVASSGDDNPSRQ-ISFSAKSGS--EITQRKGFASNPKQG 116 + FQDQDS+ST STGQS A+ G N Q ++ G E+ G ++ Sbjct 60 ECQFQDQDSTSTLSTGQSNHVEAAMGKSNTVLQNVAVHPGWGGTYEVQAESGTNASRSGE 119 Query 117 SMTGF---PNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPA 173 S T P ++ A S+ +AD ++G L+ A Y A PQMV + RV LP Sbjct 120 SDTNTLPQPQVNHNHPMACVSYPFADTYFGRLVTA-YGSNA-IIYPQMVGVTSTRVALPL 177 Query 174 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 233 E TE+ P++VNAKQY AI++RRQ RAKLEAQNKL++ RKPYLHESRH HA+KR RGSGGR Sbjct 178 ECTESLPIYVNAKQYSAILKRRQVRAKLEAQNKLVKDRKPYLHESRHRHAMKRARGSGGR 237 Query 234 FLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRS---STTSGSDI 290 FLNTK +QES+ ++ + + ++ + M+Q+++ S ST SGSD+ Sbjct 238 FLNTKN-MQESKPSSPMHD------RNIFKRQAGGNLSSSMVQHSESGSWGTSTQSGSDV 290 Query 291 TSVSDGADIFGHTEFQFSGFPTPINRA 317 TS+ G ++F EF+ SGFP I A Sbjct 291 TSIFSGDNMFQQPEFRVSGFPFHIQEA 317 >Solyc03g121940.2 Nuclear transcription factor Y subunit A-3 IPR001289 CCAAT-binding transcription factor, subunit B Length=241 Score = 143 bits (360), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 86/191 (45%), Positives = 110/191 (58%), Gaps = 16/191 (8%) Query 126 FAPAQANFS---FHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVF 182 F Q NF+ F + DP+Y L+AA P QM+ + RVPLP +L + +P+F Sbjct 35 FDTYQTNFAVVPFPHPDPYYHDLVAAYGNPT--LVQSQMLGTVAPRVPLPLDLKQDEPIF 92 Query 183 VNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQ 242 VNAKQY AI+RRRQ RA+LEAQNKL + RKPYLHESRH HAL R RG GGRF+N KK Sbjct 93 VNAKQYQAILRRRQYRARLEAQNKLSKGRKPYLHESRHRHALNRARGPGGRFVNMKK--- 149 Query 243 ESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRS---STTSGSDITSVSDGADI 299 + D + Q N+ + + ML+ + D+S ST S ITS S G I Sbjct 150 -----PGESKSPDLINGQDNQIPDELQLNTKMLERDVDQSGSHSTPFYSAITSGSKGDAI 204 Query 300 FGHTEFQFSGF 310 + H F +S F Sbjct 205 YHHQLFNYSAF 215 >Solyc12g009050.1 Nuclear transcription factor Y subunit A-3 IPR001289 CCAAT-binding transcription factor, subunit B Length=253 Score = 142 bits (357), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 67/109 (61%), Positives = 84/109 (77%), Gaps = 4/109 (4%) Query 134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193 +F Y+DP+ GL A Y PQ PQM+ + P RVPLP ++ E P++VNAKQYH I+R Sbjct 76 AFGYSDPYISGLYTA-YGPQP---YPQMMGIAPTRVPLPVDMAEDGPIYVNAKQYHGILR 131 Query 194 RRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQ 242 RRQ RAKLEAQNKL++ RKPYLHESRH+HA+ R RGSGGRFL++KK+ Q Sbjct 132 RRQIRAKLEAQNKLVKNRKPYLHESRHLHAVNRVRGSGGRFLSSKKVHQ 180 >Solyc01g087240.2 Nuclear transcription factor Y subunit A-1 IPR001289 CCAAT-binding transcription factor, subunit B Length=303 Score = 123 bits (308), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 62/107 (58%), Positives = 79/107 (74%), Gaps = 6/107 (6%) Query 134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193 S+ Y D YGG++ TY AP +P + + R+PLP ++ E +PV+VNAKQYH I+R Sbjct 107 SYPYPDMQYGGMM--TY--GAP-VHPHLFEIHHARMPLPLDMEE-EPVYVNAKQYHGILR 160 Query 194 RRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKL 240 RRQ RAK E + K I+ARKPYLHESRH HA++R RG+GGRFLNTKKL Sbjct 161 RRQIRAKAELERKAIKARKPYLHESRHQHAMRRARGTGGRFLNTKKL 207 >Solyc01g008490.2 Nuclear transcription factor Y subunit A-1 IPR001289 CCAAT-binding transcription factor, subunit B Length=312 Score = 120 bits (301), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 58/98 (59%), Positives = 71/98 (72%), Gaps = 4/98 (4%) Query 137 YADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQ 196 Y DP+YGG+LA P P P ++ M R+PLP E+ + +PV+VNAKQYH I+RRR+ Sbjct 131 YVDPYYGGILAPFGQPMVP---PHVLDMHHPRMPLPHEMAQ-EPVYVNAKQYHGILRRRE 186 Query 197 QRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 234 RAK E + KLI+ RKPYLHESRH HALKR R SGGRF Sbjct 187 SRAKAELEKKLIKVRKPYLHESRHQHALKRARASGGRF 224 >Solyc02g069860.2 Nuclear transcription factor Y subunit A-7 IPR001289 CCAAT-binding transcription factor, subunit B Length=208 Score = 112 bits (280), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 62/145 (43%), Positives = 86/145 (59%), Gaps = 17/145 (12%) Query 131 ANFSFHYADPHYGGLLAATYLPQAPT--------CNPQMVSMIPGRVPLPAELTETDPVF 182 A ++ Y DP+Y + A P + Q++ + VPLP++ + +PVF Sbjct 59 AQTAYPYPDPYYRSIFAPYDPQPYPPQPYPAQPMVHIQLMGIQQAGVPLPSDAID-EPVF 117 Query 183 VNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQ 242 VNAKQYH I+RRRQ RAK E++ KL++ARKPYLHESRH+HALKR RG GGRFL K+ Sbjct 118 VNAKQYHGILRRRQSRAKAESEKKLLKARKPYLHESRHLHALKRARGCGGRFLTAKE--- 174 Query 243 ESEQAAAREQEQDKLGQQVNRKTNM 267 +Q+QD+ G + N+ Sbjct 175 -----TDNQQKQDETGDKSQVNINL 194 >Solyc11g065700.1 Nuclear transcription factor Y subunit A-1 IPR001289 CCAAT-binding transcription factor, subunit B Length=300 Score = 111 bits (278), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 115/217 (53%), Gaps = 19/217 (9%) Query 18 PYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQISFQDQDSSSTQSTGQS 77 P+ N ++ V P N S+ SL VD G Q+ I+ +D D+ QS Sbjct 27 PWWNGAVYTPVSPGLMRENASDSS-SLEQSVD---GQSQSDGGINEEDDDAPEK---SQS 79 Query 78 YTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTGFPNIHFAPAQANFSFHY 137 + + G + Q +F + + + G + P+Q + G +I AP Y Sbjct 80 VVPLHADGSYGKADQ-NFQPAAPAIPPRLDGSLAQPQQLELVGH-SIACAPNP------Y 131 Query 138 ADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQ 197 DP+YGG++ A P P P ++ M R+PLP E+ + +PV+VNAKQY I++RRQ Sbjct 132 VDPYYGGMMTAFGQPLVP---PHVLDMHYARMPLPQEMAQ-EPVYVNAKQYRRILQRRQS 187 Query 198 RAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 234 RAK E + K I+ RKPYLHESRH HAL+R R SGGRF Sbjct 188 RAKAELEKKQIKGRKPYLHESRHQHALRRVRASGGRF 224 >Solyc01g006930.2 Nuclear transcription factor Y subunit A-2 IPR001289 CCAAT-binding transcription factor, subunit B Length=311 Score = 105 bits (261), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 57/112 (51%), Positives = 72/112 (64%), Gaps = 18/112 (16%) Query 134 SFHYADPHYG----GLLAATYLPQAPTCNPQMVSMIPGRVPLPAEL-TETDPVFVNAKQY 188 S YA YG GL +A Y PQ + GR+ LP L ++ P+FVNAKQY Sbjct 105 SLIYAKHPYGEQCIGLFSA-YAPQ-----------LSGRIMLPLNLASDEGPIFVNAKQY 152 Query 189 HAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKL 240 H I+RRR+ RAK E + K ++ RKPYLH SRH+HAL+RPRG GGRFLNT+ + Sbjct 153 HGILRRRKTRAK-EMEKKALKPRKPYLHLSRHLHALRRPRGCGGRFLNTRNM 203 >Solyc10g079150.1 Nuclear transcription factor Y subunit A-1 IPR001289 CCAAT-binding transcription factor, subunit B Length=219 Score = 88.6 bits (218), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 1/76 (1%) Query 167 GRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKR 226 GR+ LP E+ E +P++VNAKQYH I+RRRQ RAK Q K++++RKPYLHESRH HA++R Sbjct 60 GRMILPVEVKE-EPMYVNAKQYHGILRRRQLRAKAVLQQKVVKSRKPYLHESRHRHAMRR 118 Query 227 PRGSGGRFLNTKKLLQ 242 R GGRFLNTKK +Q Sbjct 119 ARDGGGRFLNTKKKIQ 134 >Solyc10g081840.1 Nuclear transcription factor Y subunit A-1 IPR001289 CCAAT-binding transcription factor, subunit B Length=154 Score = 76.3 bits (186), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/75 (60%), Positives = 56/75 (75%), Gaps = 3/75 (4%) Query 167 GRVPLPAELTETD--PVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHAL 224 GR+ LP T D P+FVNAKQYH I+RRR+ R K E + L++ RKP+LH SRH+HA Sbjct 44 GRIMLPLNFTSHDETPIFVNAKQYHGILRRRKFRTK-EIEKNLLKPRKPFLHLSRHLHAK 102 Query 225 KRPRGSGGRFLNTKK 239 +RPRG GGRFLNT+K Sbjct 103 RRPRGGGGRFLNTRK 117 Lambda K H a alpha 0.314 0.127 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2052878488 Database: Tomato Genome protein sequences (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 11,955,943 Number of sequences in database: 34,725 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40