BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: N.benthamiana Genome v1.0.1 predicted proteins 57,140 sequences; 18,711,326 total letters Query= Untitled Sequence Length=204 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf11383g00020.1sp|P21335|TADA_BACSU *-*- tRNA-specific a... 180 1e-58 Niben101Scf11383g00021.1sp|Q99W51|TADA_STAAM --*- tRNA-specific a... 136 1e-41 Niben101Scf06876g01037.1AT5G28050.2 *-*- Cytidine/deoxycytidylate... 110 8e-32 Niben101Scf06876g01036.1sp|O67050|TADA_AQUAE *-*- tRNA-specific a... 102 3e-28 Niben101Scf03029g00005.1sp|P21335|TADA_BACSU *-** tRNA-specific a... 82.8 3e-18 Niben101Scf00465g01006.1sp|P21335|TADA_BACSU *-** tRNA-specific a... 80.9 1e-17 >Niben101Scf11383g00020.1 sp|P21335|TADA_BACSU *-*- tRNA-specific adenosine deaminase IPR016193 (Cytidine deaminase-like) GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity) Length=120 Score = 180 bits (457), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 84/98 (86%), Positives = 91/98 (93%), Gaps = 0/98 (0%) Query 107 EACKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADAL 166 +ACKKLN+ ELS+CEIYASCEPCPMCFGAIHLSR+KRLVYGAKAEAAIAIGFDDFIADAL Sbjct 23 QACKKLNRFELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADAL 82 Query 167 RGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRLY 204 RGTG YQK+ LEIKKADG GA IAEQVF+ TKEKF +Y Sbjct 83 RGTGFYQKAQLEIKKADGKGALIAEQVFEKTKEKFTIY 120 >Niben101Scf11383g00021.1 sp|Q99W51|TADA_STAAM --*- tRNA-specific adenosine deaminase IPR016193 (Cytidine deaminase-like) GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity) Length=111 Score = 136 bits (343), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 71/83 (86%), Positives = 78/83 (94%), Gaps = 0/83 (0%) Query 25 LEAKDGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVA 84 +EAKDGTISVASAF+GHQ+AV D DHKFLTQAVEEAYKGV+CG GGPFGAV+V N+EVV Sbjct 7 VEAKDGTISVASAFAGHQEAVQDRDHKFLTQAVEEAYKGVECGHGGPFGAVVVRNDEVVV 66 Query 85 SCHNMVLKYTDPTAHAEVTAIRE 107 SCHNMVLKYTDPTAHAEVTA+RE Sbjct 67 SCHNMVLKYTDPTAHAEVTAVRE 89 >Niben101Scf06876g01037.1 AT5G28050.2 *-*- Cytidine/deoxycytidylate deaminase family protein LENGTH=204 Length=69 Score = 110 bits (275), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 54/63 (86%), Positives = 57/63 (90%), Gaps = 0/63 (0%) Query 142 KRLVYGAKAEAAIAIGFDDFIADALRGTGVYQKSSLEIKKADGNGAAIAEQVFQNTKEKF 201 KRLVYGAKAEAAIAIGFDDFIADALRGTG YQK+ LEIKKADG GA IAEQVF+ TKEKF Sbjct 7 KRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKKADGKGALIAEQVFEKTKEKF 66 Query 202 RLY 204 +Y Sbjct 67 TIY 69 >Niben101Scf06876g01036.1 sp|O67050|TADA_AQUAE *-*- tRNA-specific adenosine deaminase IPR016193 (Cytidine deaminase-like) GO:0003824 (catalytic activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity) Length=107 Score = 102 bits (255), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 54/65 (83%), Positives = 59/65 (91%), Gaps = 0/65 (0%) Query 43 QAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEV 102 AV D DHKFLTQAVEEAYKGV+CG GGPFGAV+V N+EVV SCHNMVL+YTDPTAHAEV Sbjct 5 NAVQDRDHKFLTQAVEEAYKGVECGHGGPFGAVVVRNDEVVVSCHNMVLQYTDPTAHAEV 64 Query 103 TAIRE 107 TA+RE Sbjct 65 TAVRE 69 >Niben101Scf03029g00005.1 sp|P21335|TADA_BACSU *-** tRNA-specific adenosine deaminase IPR016193 (Cytidine deaminase-like), IPR028883 (tRNA-specific adenosine deaminase) GO:0002100 (tRNA wobble adenosine to inosine editing), GO:0003824 (catalytic activity), GO:0008251 (tRNA-specific adenosine deaminase activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity) Length=1357 Score = 82.8 bits (203), Expect = 3e-18, Method: Composition-based stats. Identities = 46/100 (46%), Positives = 62/100 (62%), Gaps = 1/100 (1%) Query 49 DHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIREA 108 D F+ +A+ EA K D + P GAV+VH+ +VVA N+V + D TAHAE+ IREA Sbjct 1156 DEIFMREALVEAKKAADNWEV-PVGAVLVHDGKVVAHGCNLVEELRDSTAHAEMLCIREA 1214 Query 109 CKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGA 148 L LS+ +Y + EPCPMC GAI +R+ LV+GA Sbjct 1215 SNTLRTWRLSDTTLYVTLEPCPMCAGAILQARVDTLVWGA 1254 >Niben101Scf00465g01006.1 sp|P21335|TADA_BACSU *-** tRNA-specific adenosine deaminase IPR016193 (Cytidine deaminase-like), IPR028883 (tRNA-specific adenosine deaminase) GO:0002100 (tRNA wobble adenosine to inosine editing), GO:0003824 (catalytic activity), GO:0008251 (tRNA-specific adenosine deaminase activity), GO:0008270 (zinc ion binding), GO:0016787 (hydrolase activity) Length=1226 Score = 80.9 bits (198), Expect = 1e-17, Method: Composition-based stats. Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 1/100 (1%) Query 49 DHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVASCHNMVLKYTDPTAHAEVTAIREA 108 D F+ +A+ EA K D + P GAV+VH+ ++VA N+V + D TAHAE+ IREA Sbjct 1025 DEIFMREALVEAKKAADNWEV-PVGAVLVHDGKIVARGCNLVEELRDSTAHAEMLCIREA 1083 Query 109 CKKLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGA 148 L LS+ +Y + EPCPMC GAI +R+ +V+GA Sbjct 1084 SNTLRTWRLSDTTLYVTLEPCPMCAGAILQARVDTVVWGA 1123 Lambda K H a alpha 0.319 0.133 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1409055822 Database: N.benthamiana Genome v1.0.1 predicted proteins Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 18,711,326 Number of sequences in database: 57,140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40