BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch03                                                             45.4    5e-05
SL4.0ch06                                                             32.5    0.38 


>SL4.0ch03 
Length=65298490

 Score = 45.4 bits (24),  Expect = 5e-05
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  1         GAAGCTCACTGCTCAGTGTGTATG  24
                 ||||||||||||||||||||||||
Sbjct  64964405  GAAGCTCACTGCTCAGTGTGTATG  64964428


>SL4.0ch06 
Length=47258699

 Score = 32.5 bits (17),  Expect = 0.38
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  3        AGCTCACTGCTCAGTGTGTA  22
                ||||||||||| ||||||||
Sbjct  5591055  AGCTCACTGCTAAGTGTGTA  5591036



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 2347559280


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5