BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= SLM12‐2

Length=47
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch12                                                             41.7    0.005
SL4.0ch03                                                             34.4    0.82 


>SL4.0ch12 
Length=66688036

 Score = 41.7 bits (22),  Expect = 0.005
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  26       AACGGTGGAAACTATTGAAAGG  47
                ||||||||||||||||||||||
Sbjct  3195288  AACGGTGGAAACTATTGAAAGG  3195267


 Score = 38.1 bits (20),  Expect = 0.063
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1        ATCTCATTCAACGCACACCA  20
                ||||||||||||||||||||
Sbjct  3195080  ATCTCATTCAACGCACACCA  3195099


>SL4.0ch03 
Length=65298490

 Score = 34.4 bits (18),  Expect = 0.82
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  30        GTGGAAACTATTGAAAGG  47
                 ||||||||||||||||||
Sbjct  40638363  GTGGAAACTATTGAAAGG  40638346



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 17997953583


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5