BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch06                                                             156     1e-36


>SL4.0ch06 
Length=47258699

 Score = 156 bits (84),  Expect = 1e-36
 Identities = 84/84 (100%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  91       CATTTCTCCGCTCAAATTTTGCCAGAATATTCCAAAATTTTAGAAACTCCAAATACTTGT  150
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2334828  CATTTCTCCGCTCAAATTTTGCCAGAATATTCCAAAATTTTAGAAACTCCAAATACTTGT  2334887

Query  151      TTTCATAATTTTAACTTTGTACAC  174
                ||||||||||||||||||||||||
Sbjct  2334888  TTTCATAATTTTAACTTTGTACAC  2334911


 Score = 150 bits (81),  Expect = 5e-35
 Identities = 87/90 (97%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  1        TCGTCTACTTAATAGTTCCGTCGGGGCTTTGATCAAACGAATTGTAGACATCTTTTTAGA  60
                ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct  2334687  TCGTCTACTTAATAGTTCCGTCGGGGCTTTGATGAAACAAATTGTAGACATCTTTTTAGA  2334746

Query  61       ACAGTAAAAGATGTAAGAACCTGCCAATTT  90
                |||||||||| |||||||||||||||||||
Sbjct  2334747  ACAGTAAAAGGTGTAAGAACCTGCCAATTT  2334776



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 115812914860


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5