BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch03                                                             390     3e-107


>SL4.0ch03 
Length=65298490

 Score = 390 bits (211),  Expect = 3e-107
 Identities = 211/211 (100%), Gaps = 0/211 (0%)
 Strand=Plus/Plus

Query  1         AGTTATACGCCGAAAACTTACAAGTAAAGGGAATCTTCAGATCTATAGACATACCTTGCT  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61259843  AGTTATACGCCGAAAACTTACAAGTAAAGGGAATCTTCAGATCTATAGACATACCTTGCT  61259902

Query  61        AAGCATGACAACAAGAAAACCATCCTCAGAGACATTGTTTTCCAACAATGTACTTTCATC  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61259903  AAGCATGACAACAAGAAAACCATCCTCAGAGACATTGTTTTCCAACAATGTACTTTCATC  61259962

Query  121       TTTCAGCACTTTACCATTGTGAATCAGCAACTGCTGCCCACATGGGTAATTATCTTTTCC  180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61259963  TTTCAGCACTTTACCATTGTGAATCAGCAACTGCTGCCCACATGGGTAATTATCTTTTCC  61260022

Query  181       TTGTACATCTTCAATGTTCTTCTTGACTGCC  211
                 |||||||||||||||||||||||||||||||
Sbjct  61260023  TTGTACATCTTCAATGTTCTTCTTGACTGCC  61260053



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 143983621488


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5