BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch10                                                             45.4    5e-05
SL4.0ch04                                                             41.7    6e-04
SL4.0ch05                                                             34.4    0.11 


>SL4.0ch10 
Length=64792705

 Score = 45.4 bits (24),  Expect = 5e-05
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  1         ACCATGCCAATAACGAGGTTCTAG  24
                 ||||||||||||||||||||||||
Sbjct  60138145  ACCATGCCAATAACGAGGTTCTAG  60138122


>SL4.0ch04 
Length=64459972

 Score = 41.7 bits (22),  Expect = 6e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  2         CCATGCCAATAACGAGGTTCTA  23
                 ||||||||||||||||||||||
Sbjct  11701745  CCATGCCAATAACGAGGTTCTA  11701724


>SL4.0ch05 
Length=65269487

 Score = 34.4 bits (18),  Expect = 0.11
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  4        ATGCCAATAACGAGGTTCTAG  24
                ||||||||||| |||||||||
Sbjct  7934172  ATGCCAATAACTAGGTTCTAG  7934192



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 2347559280


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5