BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: N.tabacum TN90 Genome
           249,104 sequences; 3,729,080,544 total letters



Query= Untitled_sequence

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Ntab-TN90_AYMY-SS208                                                  152     2e-34
Ntab-TN90_AYMY-SS179912                                               130     1e-27


>Ntab-TN90_AYMY-SS208 
Length=518317

 Score = 152 bits (82),  Expect = 2e-34
 Identities = 132/157 (84%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  282     TTGGAGCTTACCCAAATGTACAGAACCTGTTTGGTGAGCTAGGGATTAATGATAGATTAC  341
               |||| |||||||||||| | |||||||||||||| || ||||||||||| ||| |||| |
Sbjct  354767  TTGGGGCTTACCCAAATATGCAGAACCTGTTTGGAGAACTAGGGATTAACGATCGATTGC  354826

Query  342     AGTGGAAGGAGCACTCTATGATATTTGCCATGCCAAACAAGCCTGGTGAATTTAGTCGCT  401
               |||||||||| || || ||||||||||| ||||| |||||||| || ||||| || ||||
Sbjct  354827  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAATTCAGCCGCT  354886

Query  402     TCGACTTCCCAGATGTTCTGCCTGCACCATTAAATGG  438
               | || || || || | ||| ||||| |||||||||||
Sbjct  354887  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  354923


 Score = 91.6 bits (49),  Expect = 5e-16
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  437     GGAATTTGGGCCATCTTGAGGAACAATGAAATGCTGACATGGCCTGAGAAAGTTAAATTT  496
               ||||||| ||||||  | | ||||||||||||||| |||||||| || ||||| ||||||
Sbjct  355224  GGAATTTTGGCCATACTAAAGAACAATGAAATGCTTACATGGCCCGAAAAAGTCAAATTT  355283

Query  497     GCAATCGGACTCTTGCCTGCAATG-TTGG  524
               || || ||||||||||| |||||| ||||
Sbjct  355284  GCTATTGGACTCTTGCCAGCAATGCTTGG  355312


 Score = 86.1 bits (46),  Expect = 2e-14
 Identities = 78/94 (83%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  132     CAGGTTTGGCTGGTCTATCCACTGCAAAGTATCTGGCTGATGCTGGTCACAATCCCATTT  191
               ||||||||| |||| | || || ||||| |||||||| |||||||||||||| || || |
Sbjct  353914  CAGGTTTGGGTGGTTTGTCTACAGCAAAATATCTGGCAGATGCTGGTCACAAACCGATAT  353973

Query  192     TGCTTGAAGCCAGAGACGTTCTTGGTGGAAAGGT  225
               |||| || || ||||| || || |||||||||||
Sbjct  353974  TGCTGGAGGCAAGAGATGTCCTAGGTGGAAAGGT  354007


>Ntab-TN90_AYMY-SS179912 
Length=11135

 Score = 130 bits (70),  Expect = 1e-27
 Identities = 128/157 (82%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  282   TTGGAGCTTACCCAAATGTACAGAACCTGTTTGGTGAGCTAGGGATTAATGATAGATTAC  341
             |||| |||||||||||| | |||||| ||||||| || |||||||| || ||| | || |
Sbjct  4001  TTGGGGCTTACCCAAATATGCAGAACTTGTTTGGAGAACTAGGGATAAACGATCGGTTGC  4060

Query  342   AGTGGAAGGAGCACTCTATGATATTTGCCATGCCAAACAAGCCTGGTGAATTTAGTCGCT  401
             |||||||||| || || ||||||||||| ||||| |||||||| || || || || ||||
Sbjct  4061  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAGTTCAGCCGCT  4120

Query  402   TCGACTTCCCAGATGTTCTGCCTGCACCATTAAATGG  438
             | || || || || | ||| ||||| |||||||||||
Sbjct  4121  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  4157


 Score = 91.6 bits (49),  Expect = 5e-16
 Identities = 79/94 (84%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  132   CAGGTTTGGCTGGTCTATCCACTGCAAAGTATCTGGCTGATGCTGGTCACAATCCCATTT  191
             ||||||||| |||| | || || ||||| ||||||||||||||||||||||| || || |
Sbjct  2999  CAGGTTTGGGTGGTTTGTCTACAGCAAAATATCTGGCTGATGCTGGTCACAAACCGATAT  3058

Query  192   TGCTTGAAGCCAGAGACGTTCTTGGTGGAAAGGT  225
             |||| || || ||||| || || |||||||||||
Sbjct  3059  TGCTGGAGGCAAGAGATGTCCTAGGTGGAAAGGT  3092


 Score = 80.5 bits (43),  Expect = 1e-12
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  437   GGAATTTGGGCCATCTTGAGGAACAATGAAATGCTGACATGGCCTGAGAAAGTTAAATTT  496
             ||||||| ||||||  | | |||||| |||||||| || ||||| || ||||| ||||||
Sbjct  4448  GGAATTTTGGCCATACTAAAGAACAACGAAATGCTTACGTGGCCCGAAAAAGTCAAATTT  4507

Query  497   GCAATCGGACTCTTGCCTGCAATG-TTGG  524
             || || ||||||||||| |||||| ||||
Sbjct  4508  GCTATTGGACTCTTGCCAGCAATGCTTGG  4536



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 1868246926848


  Database: N.tabacum TN90 Genome
    Posted date:  Mar 21, 2024  3:39 PM
  Number of letters in database: 3,729,080,544
  Number of sequences in database:  249,104



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5