BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Untitled_sequence Length=899 Score E Sequences producing significant alignments: (Bits) Value Solyc09g090980.3.1 887 0.0 Solyc09g090990.2.1 601 3e-171 Solyc09g090970.4.1 374 7e-103 Solyc09g091000.4.1 340 7e-93 Solyc12g096960.2.1 178 6e-44 >Solyc09g090980.3.1 Length=483 Score = 887 bits (480), Expect = 0.0 Identities = 482/483 (99%), Gaps = 0/483 (0%) Strand=Plus/Plus Query 114 ATGGGTGTAAACACCTTTACTCATGAGTCCACAACCACAATTGCCCCAACAAGGCTATTC 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTGTAAACACCTTTACTCATGAGTCCACAACCACAATTGCCCCAACAAGGCTATTC 60 Query 174 AAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACATGATGTTAAG 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACATGATGTTAAG 120 Query 234 AGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATGAACTTTGTT 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATGAACTTTGTT 180 Query 294 GAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGACAAGAATTTG 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGACAAGAATTTG 240 Query 354 GTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAATCAATTGCC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAATCAATTGCC 300 Query 414 TATGATGTCAAATTTGAAGCTGCTGGAGATGGAGGTTGTGTTTGCAAGACAACAACTGAG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATGATGTCAAATTTGAAGCTGCTGGAGATGGAGGTTGTGTTTGCAAGACAACAACTGAG 360 Query 474 TATCGCACAAAGGGTGATCATGTTGTTAGTGAAGAAGAACACAATGTAGGCAAAGGGAAA 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TATCACACAAAGGGTGATCATGTTGTTAGTGAAGAAGAACACAATGTAGGCAAAGGGAAA 420 Query 534 GCCATTGACCTATTCAAGGCCATCGAAGCGTACCTCCTCGCTAATCCTTCTGTCTACGCT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCCATTGACCTATTCAAGGCCATCGAAGCGTACCTCCTCGCTAATCCTTCTGTCTACGCT 480 Query 594 TAA 596 ||| Sbjct 481 TAA 483 >Solyc09g090990.2.1 Length=483 Score = 601 bits (325), Expect = 3e-171 Identities = 431/483 (89%), Gaps = 4/483 (1%) Strand=Plus/Plus Query 114 ATGGGTGTAAACACCTTTACTCATGAGTCCACAACCACAATTGCCCCAACAAGGCTATTC 173 |||||||| || |||| |||| ||||||| |||||||||||| |||||||||| |||||| Sbjct 1 ATGGGTGTGAATACCTATACTTATGAGTCAACAACCACAATTTCCCCAACAAGACTATTC 60 Query 174 AAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACATGATGTTAAG 233 |||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||| Sbjct 61 AAAGCTTTGGTTCTTGATTTTGACAACCTTGTACCTAAATTGTTGTCACAACATGTTAAG 120 Query 234 AGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATGAACTTTGTT 293 | || ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 AACAATGAGACTATTGAGGGAGATGGTGGTGTTGGAAGCATCAAGCAAATGAACTTTGTT 180 Query 294 GAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGACAAGAATTTG 353 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 181 GAAGGTGGTCCAATAAAGTACTTGAAACACAAGATTCATGTGATTGATGACAAGAACTTA 240 Query 354 GTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAATCAATTGCC 413 | |||||||||||||||||||||||||||| ||||||| || ||||||||||||||| | Sbjct 241 GAAACAAAATATTCACTTATTGAAGGTGATATTCTTGGAGAAAAATTGGAATCAATTACT 300 Query 414 TATGATGTCAAATTTGAAGCTGCTGGAGATGGAGGTTGTGTTTGCAAGACAACAACTGAG 473 |||||| |||||||||||||| || ||||||||||||||| |||||||||||||||| Sbjct 301 TATGATATCAAATTTGAAGCTAATGATAATGGAGGTTGTGTTTACAAGACAACAACTGAG 360 Query 474 TATCGCACAAAGGGTGATCATGTTGTTAGTGAAGAAGAACACAATGTAGGCAAAGGGAAA 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 361 TATCACACAAAGGGTGATCATGTTGTTAGTGAAGAAGAACACAATGTAGGCAGAGAGAGA 420 Query 534 GCCATTGACCTATT--CAAGGCCATCGAAGCGTACCTCCTCGCTAATCCTTCTGTCTACG 591 ||| || |||| |||||| | ||||| ||||| ||||| |||||||||||||||| Sbjct 421 ATCAT-GAA-TATTTCCAAGGCTGTAGAAGCATACCTTCTCGCGAATCCTTCTGTCTACG 478 Query 592 CTT 594 ||| Sbjct 479 CTT 481 >Solyc09g090970.4.1 Length=552 Score = 374 bits (202), Expect = 7e-103 Identities = 397/490 (81%), Gaps = 17/490 (3%) Strand=Plus/Plus Query 108 AACATTATGGGTGTAAACACCTTTACTCATGAGTCCACAACCACAATTGCCCCAACAAGG 167 |||||||||||||| | |||| ||| ||||| ||||| |||| | | || | ||| Sbjct 79 AACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGG 138 Query 168 CTATTCAAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACATGAT 227 | ||||||| ||||||| ||||| ||| | ||| | || |||||| || | || || Sbjct 139 TTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATG-C-CA-AAT 195 Query 228 GTTAAGAGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATGAAC 287 ||||||| |||||| ||||||||| ||||||||| ||| | || || Sbjct 196 GTTAAGAATGTTGAGA---CTGAGGGAGA---------TGGAAGCATTAAGAAGATAAAT 243 Query 288 TTTGTTGAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGACAAG 347 |||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||| Sbjct 244 TTTGTTGAAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAG 303 Query 348 AATTTGGTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAATCA 407 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 304 AATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCA 363 Query 408 ATTGCCTATGATGTCAAATTTGAAGCTGCTGGAGATGGAGGTTGTGTTTGCAAGACAACA 467 ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||| | | Sbjct 364 ATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAA 423 Query 468 ACTGAGTATCGCACAAAGGGTGATCATGTTGTTAGTGAAGAAGAACACAATGTAGGCAAA 527 |||||||| | |||||| ||||| ||||| | | || ||||||||||||| ||| ||| Sbjct 424 ACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAA 483 Query 528 GGGAAA-GCCATTGACCTATTCAAGGCCATCGAAGCGTACCTCCTCGCTAATCCTTCTGT 586 | | ||||| || || |||||||| |||||| |||||||||||||||||||| | Sbjct 484 A-AACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCAT 542 Query 587 CTACGCTTAA 596 |||||||||| Sbjct 543 CTACGCTTAA 552 >Solyc09g091000.4.1 Length=552 Score = 340 bits (184), Expect = 7e-93 Identities = 391/490 (80%), Gaps = 17/490 (3%) Strand=Plus/Plus Query 108 AACATTATGGGTGTAAACACCTTTACTCATGAGTCCACAACCACAATTGCCCCAACAAGG 167 ||||| |||||||| | | || ||| ||||| ||||||| || ||||||| || ||| Sbjct 79 AACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGG 138 Query 168 CTATTCAAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACATGAT 227 | ||||||| ||||||| |||||| ||||| ||| | ||||| ||| || |||| | Sbjct 139 TTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACA--A- 195 Query 228 GTTAAGAGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATGAAC 287 ||||| | |||||| | ||||||||| |||||| ||||| | |||||| Sbjct 196 GTTAAAAATATTGAG---GCTGAGGGAGA---------TGGAAGTATCAAAAAGATGAAC 243 Query 288 TTTGTTGAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGACAAG 347 |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 244 TTTGTTGAAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAG 303 Query 348 AATTTGGTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAATCA 407 |||||||| || ||||||||| | |||||||| ||||||||||| |||||| | || ||| Sbjct 304 AATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCA 363 Query 408 ATTGCCTATGATGTCAAATTTGAAGCTGCTGGAGATGGAGGTTGTGTTTGCAAGACAACA 467 ||| ||||||| | |||||||||||| |||| ||||||| |||||||||||| | | | Sbjct 364 ATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATA 423 Query 468 ACTGAGTATCGCACAAAGGGTGATCATGTTGTT-AGTGAAGAAGAACACAATGTAGGCAA 526 |||||||||| |||||| |||||| |||| ||| | || |||||||| |||| |||||| Sbjct 424 ACTGAGTATCACACAAAAGGTGATTATGT-GTTGAAGGATGAAGAACATAATGAAGGCAA 482 Query 527 AGGGAAAGCCATTGACCTATTCAAGGCCATCGAAGCGTACCTCCTCGCTAATCCTTCTGT 586 | ||||||| || || |||||| | ||||| |||||||||| ||||||||||| Sbjct 483 AAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGT 542 Query 587 CTACGCTTAA 596 |||||||||| Sbjct 543 CTACGCTTAA 552 >Solyc12g096960.2.1 Length=477 Score = 178 bits (96), Expect = 6e-44 Identities = 325/436 (75%), Gaps = 14/436 (3%) Strand=Plus/Plus Query 165 AGGCTATTCAAAGGTTTGGTTCTTGATTTTGATAGCCTTGTACCTAAATTGTTGTCACAT 224 ||| | ||||| | ||||||||||||| |||| || |||| |||||| ||||||| Sbjct 52 AGGATTTTCAAGGCTTTGGTTCTTGATGCAGATAATATTATACCAAAATTGATGTCACAA 111 Query 225 GATGTTAAGAGCATTGAGATTGTTGAGGGAGATGGTGGTGCTGGAAGCATCAAGCAAATG 284 | |||||| | ||||| | | |||| ||| | || ||||| ||||||| | ||| Sbjct 112 GCTGTTAAAAATATTGAAACTATTGA---AGA---TCATGATGGAAACATCAAGAAGATG 165 Query 285 AACTTTGTTGAAGGTGGACCAATTAAGTACTTGAAGCACAAGATTCATGTGATTGATGAC 344 |||||||||||||| ||||| || ||||| || |||||||| ||| | ||||| ||| Sbjct 166 AACTTTGTTGAAGGATATCCAATAAAATACTTAAAACACAAGATCCATTTCATTGACGAC 225 Query 345 AAGAATTTGGTAACAAAATATTCACTTATTGAAGGTGATGTTCTTGGTGACAAATTGGAA 404 ||||| |||||| |||||||||| | |||||||| || |||||||| || || |||||| Sbjct 226 AAGAACATGGTAATAAAATATTCATTAATTGAAGGAGAAGTTCTTGGAGAAAATTTGGAA 285 Query 405 TCA-ATTGCCTATGATGTCAAATTTGAAGC-TGCTGGAGATGGAGGTTGTGTTTGCAAGA 462 || ||| | ||| || | | |||||||| || || | ||||||| || ||||||||| Sbjct 286 -CATATTTCTTATTATATTAGATTTGAAGAATG-TGAAAATGGAGGGTGCATTTGCAAGA 343 Query 463 CAACAACTGAGTATCGCACAAAGGGTGATCATGT-T-GTTAGTGAAGAAGAACACAATGT 520 ||| || |||||||| ||||| ||| || ||| | || | ||||||||| ||| | Sbjct 344 CAATAAGTGAGTATCATACAAATGGTAAT--TGTATAGTCAAAGAAGAAGAAATCAAAGA 401 Query 521 AGGCAAAGGGAAAGCCATTGACCTATTCAAGGCCATCGAAGCGTACCTCCTCGCTAATCC 580 || | || ||||| ||||| || ||||| | || || || || || |||||||| Sbjct 402 AGATAGAGACAAAGCTATTGAACTTTTCAAACTTGTTGAGGCATATCTTCTTGCTAATCC 461 Query 581 TTCTGTCTACGCTTAA 596 || || ||| | |||| Sbjct 462 TTTTGCCTATGTTTAA 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29839872020 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5