BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Niben261_genome.fasta
           17,639 sequences; 3,035,611,412 total letters



Query= Untitled_sequence

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben261Chr05                                                         220     2e-55
Niben261Chr01                                                         148     1e-33
Niben261Chr14                                                         137     2e-30


>Niben261Chr05 
Length=138451958

 Score = 220 bits (119),  Expect = 2e-55
 Identities = 119/119 (100%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  147        GTATCTTGTTCCAGCCGACTTAACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGAT  206
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134309478  GTATCTTGTTCCAGCCGACTTAACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGAT  134309537

Query  207        TAAATTGAGTGCAGAAAAGGCAATTTTCATATTTGTTGATAATGTCCTACCACCAACAG  265
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134309538  TAAATTGAGTGCAGAAAAGGCAATTTTCATATTTGTTGATAATGTCCTACCACCAACAG  134309596


 Score = 110 bits (59),  Expect = 5e-22
 Identities = 59/59 (100%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  37         GAGAAGAGGCGTGCTGAAGCTTCTAGGATTAGGGAAAAGTACCCCGATAGGATTCCGGT  95
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134306754  GAGAAGAGGCGTGCTGAAGCTTCTAGGATTAGGGAAAAGTACCCCGATAGGATTCCGGT  134306812


 Score = 104 bits (56),  Expect = 3e-20
 Identities = 56/56 (100%), Gaps = 0/56 (0%)
 Strand=Plus/Plus

Query  93         GGTAATAGTTGAAAAGGCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGT  148
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134308750  GGTAATAGTTGAAAAGGCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGT  134308805


>Niben261Chr01 
Length=186295347

 Score = 148 bits (80),  Expect = 1e-33
 Identities = 106/119 (89%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  147        GTATCTTGTTCCAGCCGACTTAACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGAT  206
                  ||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| || ||
Sbjct  113826682  GTATCTTGTGCCAGCTGACTTGACAGTTGGGCAATTTGTCTATGTCATTCGCAAGAGAAT  113826741

Query  207        TAAATTGAGTGCAGAAAAGGCAATTTTCATATTTGTTGATAATGTCCTACCACCAACAG  265
                   ||||||||||| ||||||||||||||||||||| |||| || |||||||| |||||||
Sbjct  113826742  CAAATTGAGTGCGGAAAAGGCAATTTTCATATTTATTGACAACGTCCTACCCCCAACAG  113826800


>Niben261Chr14 
Length=153778118

 Score = 137 bits (74),  Expect = 2e-30
 Identities = 104/119 (87%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  147       GTATCTTGTTCCAGCCGACTTAACAGTAGGGCAGTTTGTCTATGTCATTCGCAAAAGGAT  206
                 |||||| || ||||| ||||| ||| | ||||| |||||||||||||||||||| || ||
Sbjct  95338716  GTATCTCGTGCCAGCTGACTTGACAATTGGGCAATTTGTCTATGTCATTCGCAAGAGAAT  95338775

Query  207       TAAATTGAGTGCAGAAAAGGCAATTTTCATATTTGTTGATAATGTCCTACCACCAACAG  265
                  ||||||||||||||||||||||| ||||||||| | || ||||||||||| |||||||
Sbjct  95338776  CAAATTGAGTGCAGAAAAGGCAATATTCATATTTATCGACAATGTCCTACCGCCAACAG  95338834


 Score = 84.2 bits (45),  Expect = 3e-14
 Identities = 53/57 (93%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  93        GGTAATAGTTGAAAAGGCGGAAAAGAGTGATATTCCCAACATTGACAAGAAAAAGTA  149
                 ||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct  95337895  GGTGATAGTTGAAAAGGCTGAAAAAAGTGATATTCCCAACATCGACAAGAAAAAGTA  95337951



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 740564370964


  Database: Niben261_genome.fasta
    Posted date:  Jul 1, 2025  1:16 PM
  Number of letters in database: 3,035,611,412
  Number of sequences in database:  17,639



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5