BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 4.0) 34,075 sequences; 44,419,890 total letters Query= Untitled_sequence Length=1788 Score E Sequences producing significant alignments: (Bits) Value Solyc02g090200.3.1 2137 0.0 Solyc12g088480.2.1 132 1e-29 >Solyc02g090200.3.1 Length=2141 Score = 2137 bits (1157), Expect = 0.0 Identities = 1161/1163 (99%), Gaps = 0/1163 (0%) Strand=Plus/Plus Query 1 ATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ATGGGTGCTCGTGGGAGGAAAAGAGCTGCTCCGGTGAACACCGACAATGTCGATTGCAAT 136 Query 61 ACCCAGAAAAATTCTGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAG 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 ACCCAGAAAAATTCAGAGTACGAACAGTTGAGGGAAAAAAGAATCAAAGAAAATCTTGAG 196 Query 121 AGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197 AGGATGCAAAAGTTGGGGATTTTTGACATATCACTCAAACTCAAGCCTGTTAGGACACCC 256 Query 181 ATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 ATCGTTCGCAAAACCCCTCAGCGTCTCTCTCCTGTGCAGCGTTCTGGACCCACGCGCCGG 316 Query 241 TCCTCCAGGCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TCCTCCAGGCTGCAGAGTGCGACACCAGTTAGCTATTCAGAGGTGCATCTGTCGAAGATT 376 Query 301 GATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GATGACTCCTTGGATGGTAAGCATCATTTGTTGAGGGAGGAAGGGGCAAAGCCAGAGATT 436 Query 361 TACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 TACACGGAAGAACACGAGAAATTGTTGGGTTCCACTGATTTGAGCTGGACTTTTTTTGTG 496 Query 421 GATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 GATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAAGGAAAAACTTGTCAT 556 Query 481 CAGTGCCGACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 CAGTGCCGACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAATTGCCAAATTGTTCAA 616 Query 541 GGACAATTCTGTGGAGATTGCTTGTATATGAGATACGGAGAACATGTACTCGAAGCGAAC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 GGACAATTCTGTGGAGATTGCTTGTATATGAGATACGGAGAACATGTACTCGAAGCGAAC 676 Query 601 AAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAACTGCAGCTTGTGCCGG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 AAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAACTGCAGCTTGTGCCGG 736 Query 661 CAAGCAAAAGGTTGGGCTCCTACTGGTGCTCTCTATAGGAAGATTGCTAGACTGGGTTAT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 CAAGCAAAAGGTTGGGCTCCTACTGGTGCTCTCTATAGGAAGATTGCTAGACTGGGTTAT 796 Query 721 AAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAAC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 797 AAGTCAGTCGCACATTATCTAATTCAAACCCATCGAGCTACTGTCAGTACCGAGAATAAC 856 Query 781 TTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 857 TTGACACCATTCTCTGCAAAAAGATCACTACCTTTCTCAGATATGGAAGGTACAAGAAAA 916 Query 841 GATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 GATGAGGGACTCTGTGAGGTGAAACCAGTGGCGTATGTGGCGTATGATGCTAATGAACCC 976 Query 901 AATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 977 AATTTAGCTCCAGAAAGTAGTACAGAGCCTTTGCTGCTGAAACCTTATCCTGAAAACAGT 1036 Query 961 GGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAGCAGACAACAAATCA 1020 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1037 GGTACAGATCTTGTTCTCTCAGGCGACAATGTGGGAAACTTCTCAACAGACAACAAATCA 1096 Query 1021 GGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 GGAAATGCAAATGCTGTGCTGGTGGTAGGTAGCTCATTGACTTCTCAAACAGAGATGAAA 1156 Query 1081 CCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTG 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 CCAGTGGACTATGATGGCCATGAGCCCAACTTAGCACCGGAAAGTAGCACAGTGCCCTTG 1216 Query 1141 CTGAAGTCCATCGTTGAACCCTT 1163 ||||||||||||||||||||||| Sbjct 1217 CTGAAGTCCATCGTTGAACCCTT 1239 Score = 1160 bits (628), Expect = 0.0 Identities = 628/628 (100%), Gaps = 0/628 (0%) Strand=Plus/Plus Query 1161 CTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCT 1220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 CTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGCT 1245 Query 1221 ACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAA 1280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 ACTGAAACATGACTCCGAAAACAGTGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAA 1305 Query 1281 TGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTT 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 TGAAAATGTCGTGCTGGTGGGCAACTCACTGACTTCTCAAACAGAGGTGAAACCAACCTT 1365 Query 1341 ATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACT 1400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1366 ATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTACTACT 1425 Query 1401 GAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAATGCAGGAAA 1460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1426 GAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAATGCAGGAAA 1485 Query 1461 CTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAGTGCATTGAC 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 CTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAGTGCATTGAC 1545 Query 1521 TTCAAGTACACCCGTGCTTACTGAATTGAATGATGTCTTCAAAGGCGAGTCACAGCTTAG 1580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 TTCAAGTACACCCGTGCTTACTGAATTGAATGATGTCTTCAAAGGCGAGTCACAGCTTAG 1605 Query 1581 TGATGAATTTGACATTGGAAAAACGCAATCAAAAGAAGAAAAAGAGGACAGCATTTGTGT 1640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1606 TGATGAATTTGACATTGGAAAAACGCAATCAAAAGAAGAAAAAGAGGACAGCATTTGTGT 1665 Query 1641 CTTGGATGACAAAAACTGTGATGAGGTTGCACCAGAAGTAAGTTCAAAGTCGAAGAAGAA 1700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 CTTGGATGACAAAAACTGTGATGAGGTTGCACCAGAAGTAAGTTCAAAGTCGAAGAAGAA 1725 Query 1701 GCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAG 1760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1726 GCCTTGTCGAGCTGCTGCCACACATGTCTTTGATACTATTGCTGGAAGACTAAGGCAGAG 1785 Query 1761 ACGTGGAAGAAGCAATCTGGAAGCATAA 1788 |||||||||||||||||||||||||||| Sbjct 1786 ACGTGGAAGAAGCAATCTGGAAGCATAA 1813 Score = 117 bits (63), Expect = 3e-25 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 1333 CCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTG 1392 |||| |||| ||| ||||||||||||| |||||||||||||||||| | |||||||||| Sbjct 1182 CCAA-CTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTG 1240 Query 1393 TTACTACTGAAACATGACTCTGAAAACAGTG 1423 || ||||||||||||||||| |||||||||| Sbjct 1241 TTGCTACTGAAACATGACTCCGAAAACAGTG 1271 Score = 117 bits (63), Expect = 3e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1160 CCTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTTGTTGC 1219 ||||| ||| ||||||||||||| |||||||||||||||||| | |||||||||||| | Sbjct 1362 CCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTTGTTAC 1421 Query 1220 TACTGAAACATGACTCCGAAAACAGTG 1246 |||||||||||||||| |||||||||| Sbjct 1422 TACTGAAACATGACTCTGAAAACAGTG 1448 Score = 117 bits (63), Expect = 3e-25 Identities = 112/135 (83%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 931 TTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAAT 990 || || ||||||| | | ||||||||||||||| | ||||||| |||||| | || ||| Sbjct 1418 TTACTACTGAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAAT 1477 Query 991 GTGGGAAACTTCTCAGCAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGT-GGTAGG 1049 | ||||||||||||||||||||||||| |||||||| |||||| |||||||| || || Sbjct 1478 GCAGGAAACTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAG- 1536 Query 1050 TAGCTCATTGACTTC 1064 | || ||||||||| Sbjct 1537 T-GC--ATTGACTTC 1548 Score = 111 bits (60), Expect = 2e-23 Identities = 111/135 (82%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 1393 TTACTACTGAAACATGACTCTGAAAACAGTGGTAAAAATCTTGTGCTCTCATGTGATAAT 1452 || || ||||||| | | ||||||||||||||| | ||||||| |||||| | || ||| Sbjct 1007 TTGCTGCTGAAACCTTATCCTGAAAACAGTGGTACAGATCTTGTTCTCTCAGGCGACAAT 1066 Query 1453 GCAGGAAACTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAG- 1511 | |||||||||||| |||||||||||| |||||||| |||||| |||||||| || || Sbjct 1067 GTGGGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGT-GGTAGG 1125 Query 1512 T-GC--ATTGACTTC 1523 | || ||||||||| Sbjct 1126 TAGCTCATTGACTTC 1140 Score = 86.1 bits (46), Expect = 9e-16 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 994 GGAAACTTCTCAGCAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGC 1053 ||||| |||||| || ||||||||||||||||| ||||| |||||||| | || | | Sbjct 1274 GGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGT-G--GGCAAC 1330 Query 1054 TCATTGACTTCTCAAACAGAGATGAAACCA 1083 ||| ||||||||||||||||| |||||||| Sbjct 1331 TCACTGACTTCTCAAACAGAGGTGAAACCA 1360 Score = 80.5 bits (43), Expect = 4e-14 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 1249 GGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGT-G--GGCAAC 1305 ||||| ||||| || ||||||||||||||||| ||||| |||||||| | || | | Sbjct 1070 GGAAACTTCTCAACAGACAACAAATCAGGAAATGCAAATGCTGTGCTGGTGGTAGGTAGC 1129 Query 1306 TCACTGACTTCTCAAACAGAGGTGAAACCA 1335 ||| ||||||||||||||||| |||||||| Sbjct 1130 TCATTGACTTCTCAAACAGAGATGAAACCA 1159 Score = 73.1 bits (39), Expect = 7e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1452 TGCAGGAAACTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAG 1511 ||||||||| |||||| || |||||||| |||||||||||||| ||||||||| |||| Sbjct 1270 TGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAA 1329 Query 1512 TGCATTGACTTC 1523 || ||||||| Sbjct 1330 CTCACTGACTTC 1341 Score = 73.1 bits (39), Expect = 7e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1245 TGCAGGAAATATCTCAGTAGCCAACAAATCAGGAAATGAAAATGTCGTGCTGGTGGGCAA 1304 ||||||||| |||||| || |||||||| |||||||||||||| ||||||||| |||| Sbjct 1477 TGCAGGAAACTTCTCAGCAGACAACAAATTAGGAAATGAAAATGCCGTGCTGGTAGGCAG 1536 Query 1305 CTCACTGACTTC 1316 || ||||||| Sbjct 1537 TGCATTGACTTC 1548 Score = 69.4 bits (37), Expect = 1e-10 Identities = 52/59 (88%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 1106 CCAA-CTTAGCACCGGAAAGTAGCACAGTGCCCTTGCTGAAGTCCATCGTTGAACCCTT 1163 |||| |||| ||| ||||||||||||| |||||||||||||||||| | ||||||||| Sbjct 1358 CCAACCTTATTACCAGAAAGTAGCACAGAGCCCTTGCTGAAGTCCATTGCTGAACCCTT 1416 >Solyc12g088480.2.1 Length=1089 Score = 132 bits (71), Expect = 1e-29 Identities = 187/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 406 TGGACTTTTTTTGTGGATGGATATGGAAATGATGGGAAGAGAATCTATGATCCAGTCAAA 465 |||||| | | ||| ||||| ||||| | ||||| || | | |||||||| | || Sbjct 391 TGGACTCTCTATGTTGATGGTTATGGTGAAGATGGTCAGCGTGTATATGATCCTGATAAT 450 Query 466 GGAAAAACTTGTCATCAGTGCCGACAGAAAACTCTTGGTCATCGTACTCATTGTAGCAAT 525 || || | || ||||||||| | ||||||||||||||||| || ||| ||||||||| Sbjct 451 GGCAAGTCATGCCATCAGTGCAGGCAGAAAACTCTTGGTCAACGCACTGCGTGTAGCAAT 510 Query 526 TGCCAAATTGTTCAAGGACAATTCTGTGGAGATTGCTTGTATATGAGATACGGAGAACAT 585 ||| | | | |||||||||||||||||||||||| |||| ||||| || ||||| || Sbjct 511 TGCAAGCTCGGTCAAGGACAATTCTGTGGAGATTGTCTGTACATGAGGTATGGAGAGAAT 570 Query 586 GTACTCGAAGCGAACAAGAATCCGAATTGGCTTTGCCCTGTTTGTCGAGGAATATGTAAC 645 || | ||| | || | ||| | || ||| |||||||||| || ||||||||||| || Sbjct 571 GTCATTGAAACAAATGAAAATACAAACTGGATTTGCCCTGTCTGCCGAGGAATATGCAAT 630 Query 646 TGCAG 650 ||||| Sbjct 631 TGCAG 635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76706802280 Database: Tomato Genome cDNA (ITAG release 4.0) Posted date: Mar 21, 2024 4:18 PM Number of letters in database: 44,419,890 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5