install.packages("gplots")
install.packages("gplots")
q()
update.packages(checkBuilt=TRUE, ask=FALSE)
q()
q()
q()
q()
install.packages("gplots")
library(gplots)
setwd("~/Desktop/ch4_demo_dataset/cuffdiff_out/")
#load file with selected loci, based of p value
allde = read.table("", sep = "\t", header=TRUE, row.names=1)
setwd("~/Desktop/ch4_demo_dataset/cuffdiff_out/")
source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
biocLite("cummeRbund")
biocLite("cummeRbund")
library(cummeRbund)
source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
biocLite("BiocUpgrade")
source("http://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
