Sol Genomics Network

Solanum lycopersicum gene Solyc04g005490.2

Name Solyc04g005490.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc04g005490	Length 6,239

Description

Appr-1-p processing domain protein (AHRD V1 *--- D5EGM7_AMICL); contains Interpro domain(s) IPR002589 Appr-1-p processing

Location(s)

SL2.50ch04:326470..332708

GFF source

ITAG_eugene

From BOGAS: 1

Length: 6239

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc04g005490.2.1	SL2.50ch04:326470..332708	1,937	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc04g005490.2 SL2.50ch04:326470..332708
TAGAAGAGAGATTCAAAAAAGTGTAGCACAATATGTATCGCCCTGTGCCTATTACTACCCGAGGTGGGGAACCTACAGATAGTGGAGATCCTGTGGTGACGTTGGACCAAGTTCCACGTTGGAGTAATGCGGAATTTAGGTATGCACATGAGAATGAAGATCCTACTAATTCATGCTTTCCGGACCCCTTGGCATCTGCTTCTGGGTCTGAATTTAATGGTAGTGGCATAGTTTCCAAGTTTCCCATGGATCATGAGATTAACTCCAAGATATACTTGTGGAGAGGCGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACTAATGAGGTAAGAGGTGACTATTCATGTAGCAGTATTTGTTTTGCATGTCCGTCATAAATGTGAGCATCTTTTTGTCGTTTATTATTGAACATCTAGGTTTGCCTGCAATGTTTCATGTGAGGTGGCAACATAAAGGCGAACTTGTAGCCAACAAATTAGCTACACTTCCATTTTATTTTACTTTTTTGAAAAGGTTTTCAGTCTTTGAAGCCAACAGATTATCTCATCTGTGTATTCTCTGATTTAAGTGAACTTCGACTAACTTTATTAAGCAAGGGGATGACTGCAATTGTCGCTTATTCTTGAACTGAGACTCAATGTCCAAAACATAATCTTAAATTTTCTTTTCTTTTCTCTGAAAGAATGAGGTAGGTAGGTGGGTTAGCATAAAAGTTGATAAGCGTGAAAATGTTGATTTTGGTACCAAAGGCATGAAGAACAAGTTTAGAACTGTCTAGAAATTGAAACATGTCTTTTTTATTTTGTCCGGTAAATGTCTTGTTCACTTTCCTGAATCATTATGTAGAGCAACAATGTGATGGGAGATATAAGATATGGTGTGACCTATTTTTATATTTTATGTGGACATTTATATTGTGTATCATTTATTGATCTATACGCCTCAACATGAGATTTATACCTGTTTTTTGGTGGTCAAAAGAACTTAGACGAAGCTCACAGCAGCCCAGGATTGCATGCTTCAGCTGGACCTGGTCTTGCAGAAGAGTGTGCCACATTGGTAGGTTCTTTCGTGCATGAATATGTGTTTAGGAATTAATTTTGATTTCTTTTTCTCTGTGCTGGTTTGCAAATAGAAGTTAGAGTATGACTTGTGCGAACTGTTGAAGTTCCAGTTTGTCCATTCCTTCTTCTAACTTAAGAAAGTTATCTCCCACTTTTTAAAATTTGTTCTGTTCTATTCAACTAGTGACAGTGATGTTGACAGACTAATATATGGTTTACTTTTCCTTCATAGGGAGGCTGCCGGACAGGAATGGCAAAAGTTACAAATGCTTATGATCTTCCTGCTAGGTGAGTATACTGGATTGTTTTTCTCAGAACTTTTGCAACAAGCTTTTCCATAATTTTCATATTTCTGCTTGCACTAGAAGTTAATCAATGTACTACAGTGTTCTCACTTGTAATAAATACCCATCCTAAGTATTCTCTTTTGTTTTTCTTTGTTAGATCTGTAACCTAATTCTTCTATTTGTTGATGTGAAATATATTTCTCTTTAAGTTCAATTAAGGAAATCGAGCCGTTTTCTTAGATATCCATTTTTTCAGTATTAAAAGAGAGAAAAAGGGAGAACACTGTGAACCCAACTAAGCTGGCTGTACATAAAAGGAGCATGTACTCTGAGAATATGCTTCTCAGATGGAGCTTGGAGATTCTCTATTGGATAGTTACTACCTACTGCTCTCGTTGAACATGTAAAGAGATCCATAATTGTATGTTCAATGGAGTTGTCTTAGAACAATAGTAAGTGGGTTGGTTAGGAAAGTCCCATGTCCCAGCTAAGTTGCACTAATATTTGAGATATTCTCAAGAAATTTCAGTATGAACAAACAGTTTGACTCGTTTGGATTTTCTGACATAAGAATCCAGTATAGTAGTAGTTTAATAAATTCAGTTTTATCTTTAACTGTACTTTCGAAGTGCTTATCTATTCATTGAAATCATTAGGCCGCTATTACTGCCTATTTCAATAGTCAATGCCGGTCCACTATATCTTGCTTTAATTTTTCACACCTCAACTATTGAAGCAATCTTGTCCCTTAACTTTGCTATAAGAACATGGTGATTCACACATACGTACTCAACCAAAAATAAAGGAAGAGCAACTTCACTTAATGTTTTAATTCCAAGATCCGATCATGGTTGTTTAGGTTAGCTATATTCTTGTATCACCGTTTAAACTGCTATGGTCTGTTAAAGTTAAAAGCAAGAAACATTAAGTGTTGAACTCTGTTTTACATTATCATTTATCACGATACTAGCATTAGTAGACGTTGAGTAGCATTTTCTAACTATTGACCCCACGTTCATTTTATTCTTGCATTGTGCAGGAGGGTCATACATACTGTTGGTCCCAAGTATGCTGTAAAATACCATATTGCTGCAGAGAATGCGCTAAGCCATTGCTATCGCTCTTGCTTTGAGCTTCTTATAGAAAATGGGCTGAAGAGGTTGTCTTATTGTTGTAGTTTCAACTGTTACATTTTAGTTCCCTGAGGTTGATTATTGAAGGAAAAGAAAAATAGAAGCAAAAATATAAAAGACCAATCTTGGCCCTAGGACTTTGGTCTAGTAGTAAGAGCACAACATGTGATGTGAGCTTGGGCTCTGCCACAGATAAGAGGTCCGGGAATTAATTGGAGAGGATAAAGGAGTGGACTCATTAATCACTGATCTATAGCCCTTGGATATTTTTTGTATAAAAAGAAACTGATCTTGAGTCTTATAAGTGTTTAAATATTTGGAAGTTGATGTAACCTCGTTGTATCATGTGGATGCAGCATTGCTATGGACTGTATATATACAGAAGCGAAAAGTTACCCACGAGAACCAGCTGCTCATGTGGCAATAAGTGAGATATCTTTGTTGGCTATTTTCATAATTTCTAATGTTTCATAATTGATGTTCAAGTTGCAGGTATACATTACTCTGTTTTCTCTGTTGCATTAATGCTATTGTATCTCCATTATAAATATGTTTTTAACGTGTATTCCAATGCTTTAGCTTCCAATAGTTTGTTCCACGTTTTCATGATGATATCTTTATTTCACTTTGATTAGGAACTGTAAGGCGGTTCATTGAGAAACAGAAAGATAAAGTAGAGGCAATTGTTTTCTGTACTACTACATCACAAGATACGGAGATTTATAAAAGGTATTCTTAGTACATCAATTTTCTTGTAGATAGCAGAGGAAGGAATTCCTTCAGTTCCTATTTCTTTGAGAAGCCCAACCATCCATCTTTCGAGTGGTATTAATACTCTGCAGATTGCTTCCACTCTATTTTCCTCGGGATAAGCATGAGGAGGAAGTTGCCCTTCTAAAACTTCCTGCAGATGTTGGGGATGAAAATGGGGAGACAACTATAGATGAGCGTAAAATTAGGATAAAACCGTTACCAAATGTCAAAAAGTCCAATCCAAGGATTTCCCAGGCCTCTGTTGATTTGTCTGTCAGTAATGTTGGTTTGACCAGGTTAGTGGCTAATTTTGCATCTACACTTGTGGATTATGCTTGGTATGCTGTTATTTCTATTTGTTCATTATTAAAATGATAAATAAAATAACCCAAACTATTACAATTTTAATATTAGCCGTATCCCATCAGAACTGACGCACTGTCAAGCAATTATCCTTGTAATTAGAGTTCAACATCACTTGCGCTGGTAAATTTCAAAAACCAATGCCATTAATACAGGAATCTTCTTGTTACTTCAACAGTGGAATATTACTTGGATGAACATGTTCATGTTTTGATGGATTCTGTCTTCTTCTTTCTACGTTCTAGTCTTATTTTTGAAGGATATGCCTTTATTTTTTTTTATCATCAAGACTTAATGAAATGATTTTTCTGAAGTAGGAGTTCATCCTATTTGGATGCTTTTCTGGATCCTGCTTTTATGTCCCTGATCAAGGACCCAGATCAGCGACGGAAAGAACAATGGGAAAAAACTGCCCAAGCTCAAACTAGCTGGAACTTCTTTAAAATGTTTGGATATGGTGACGTCGCAGGACCTCCTTTGTCAGCTGCAGAAGAATACTCGCTTCATTCTAGATATATTGCAAAAGCAAATACTCTGAATTTTTCAGAAATTGCAGAAATGAAAATTGTGTAAGCACCTTGCTGTATAGTATATGTCTCTGCAGACTTTAGTTATTAGTCCATGGTACCTAAAATACATGAAATATCTGTCTAGTTGTCCAAATATGTACTTGTTTGGGTACAAAGTGGTTTTATTGATTTTTCATCTTACGAACAACTAGTTAAGTCTCGTTGACATAGTTAGGATCAAGCTCAGATGAACTTGTGTTATATTGCTCAACTACCATGTCAGAATTGACTTTGTTTCAGCTACCGAGGAGGGGTTGACAGTGAAGGCCGTCCAGTAATGGTTGTTGTGGGGGCACATTTCCTGCTAAGATGTCTTGATCTGGAGAGATTTATTATCCATGTTGTAAAGGTACGTGATACTTGCTTGCTTTCCCTCCGCCGCCAAAAATATAGGTTAGATATGATCTATTGTTCATATCTATTGAGCTGTTCAATAATTTGTCATCTTTGATATAACTGCACAAATTTTCTGTAAAAGATTACATTATATGTCAATTTGCAGGAATTTGAACCATTGATACAGAAACCTTACTCTATTGTGTACTTCCATTCTGCTGCAACTCTACAGATGTGAGTATCATCCTTTCTCACATTGGCCTGTCCCCCTTGCTCAGTACGATGAATAAATTTCTTATTTTACTTTTTTGTTTATCTGTTTTATGGACTTTTCCAATTAATAAAAGTTAAAGGTTAAACATTGGATGTGTATTTTGTTCTTTTCTTGGGTAATATTATATAATATATGCTTTTTCCTACCTTACAGTTCTATTTTGTTTTGTGATGTTAATAGATATTATTTTGTTGTACCAAAACAGGCAACCAGATCTAGGATTAATGAAGAGGATACAACAAATTCTTGGTCGCAAGCACCGGCACAACCTTCATGTATGCAATGCTTCTCCTCTGTTCCCCTTGTGCCATGGTTCCCCAATGTTTTTACTTGCTGTTATACAAGTAGTTGACTTTCTGTATTCTAAATCTCCTTTTTCTCTGGGCAGGCGATATATGTTCTTCACCCTACTTTTGGACTGAAGAGTGCAGTTTTTGGTTTACAACTCTGTGTGGATAATGTGGTACTTACGGTCCTATTATCCTGCTCTCTGTCTTCTCTCTAATGTCATTCTTGCATTACAATGTGGATTTCATTCTTTTTTCTGAAGACTTGTTTCCTTTTACACTAATTCTCAGGTATGGAAGAAAATAGTATATGTAGATCGTCTTCTGCAATTATTCCGCTATGTTCCTCGTGAGCAGCTGACTATTCCAGATTTTGTTTTCCAGTTAAGTAATCATTCATTTTTCTGATCATAATTATGAATTTCAAGTGTGAAAACAGCAGAAGTTTTACACATTGTCAGTAGCTCCATCGAGAAAGGTGTGATAATTGATATCTAATTTGCAAAAATAGCATCTTAAAGCTCAGAAATAGATATTCAGACTCCTACAAGGGAAATACCGCACTTAGTTTCCCTGTTTACTTAAAATTTTATTCATAAAACTTGACCCTGCCTAGGGAAGTTGTGATCAGGAATCCTAGAAAAGATCGAGAGTCCCTCCGTAGTCTGTTCATGACAAATGAGATCTTCAGTGTGGGAGGCTGGAGCAGCTCAAATAAAGAACAGTCTGGTTCTTGTCATAATTTATCTCTCTGAATGTCATGCAGTTCTTTAAGTGTAGAGCTGTCGTTTCCTGTAATATAAAGAACAGAATCGAGTAGATTAAATGGACTGATAATCATGTTTGTGTTGCAGGCATGATTTGGAAGTAAATGGAGGGAAGGGCCTAATTGTGGATCCTAGAACCAAGTATGTTTATCAGAGACCATAGTCTCAAAACTTCATCCGATAAAAGAAGAAAATAGACGCTGTAGTAAGATTGTGGAATTTAAATTTGTTTGTACAGAGGCTGTAATTGTTTTGTGCAATATTAGCAGTGTATTTAGCTAACTTTGTCTGTAATTTGATTTATTTATGCAACCATATGTCCAGTCCTGTGCTAGCTAATGGCAATAAATTTCTTTGTTTCTGCAACATTTTCCCTTCTAGATATGTCATTTTAGTC

Download sequence region

Download sequence (6.1Kb)

Get flanking sequences on SL2.50ch04

mRNA Solyc04g005490.2.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc04g005490.2.1 Appr-1-p processing domain protein (AHRD V1 *--- D5EGM7_AMICL); contains Interpro domain(s) IPR002589 Appr-1-p processing
TAGAAGAGAGATTCAAAAAAGTGTAGCACAATATGTATCGCCCTGTGCCTATTACTACCCGAGGTGGGGAACCTACAGATAGTGGAGATCCTGTGGTGACGTTGGACCAAGTTCCACGTTGGAGTAATGCGGAATTTAGGTATGCACATGAGAATGAAGATCCTACTAATTCATGCTTTCCGGACCCCTTGGCATCTGCTTCTGGGTCTGAATTTAATGGTAGTGGCATAGTTTCCAAGTTTCCCATGGATCATGAGATTAACTCCAAGATATACTTGTGGAGAGGCGACCCCTGGAATCTCGAGGTAGATGCTGTTGTTAACTCTACTAATGAGAACTTAGACGAAGCTCACAGCAGCCCAGGATTGCATGCTTCAGCTGGACCTGGTCTTGCAGAAGAGTGTGCCACATTGGGAGGCTGCCGGACAGGAATGGCAAAAGTTACAAATGCTTATGATCTTCCTGCTAGGAGGGTCATACATACTGTTGGTCCCAAGTATGCTGTAAAATACCATATTGCTGCAGAGAATGCGCTAAGCCATTGCTATCGCTCTTGCTTTGAGCTTCTTATAGAAAATGGGCTGAAGAGCATTGCTATGGACTGTATATATACAGAAGCGAAAAGTTACCCACGAGAACCAGCTGCTCATGTGGCAATAAGAACTGTAAGGCGGTTCATTGAGAAACAGAAAGATAAAGTAGAGGCAATTGTTTTCTGTACTACTACATCACAAGATACGGAGATTTATAAAAGATTGCTTCCACTCTATTTTCCTCGGGATAAGCATGAGGAGGAAGTTGCCCTTCTAAAACTTCCTGCAGATGTTGGGGATGAAAATGGGGAGACAACTATAGATGAGCGTAAAATTAGGATAAAACCGTTACCAAATGTCAAAAAGTCCAATCCAAGGATTTCCCAGGCCTCTGTTGATTTGTCTGTCAGTAATGTTGGTTTGACCAGGAGTTCATCCTATTTGGATGCTTTTCTGGATCCTGCTTTTATGTCCCTGATCAAGGACCCAGATCAGCGACGGAAAGAACAATGGGAAAAAACTGCCCAAGCTCAAACTAGCTGGAACTTCTTTAAAATGTTTGGATATGGTGACGTCGCAGGACCTCCTTTGTCAGCTGCAGAAGAATACTCGCTTCATTCTAGATATATTGCAAAAGCAAATACTCTGAATTTTTCAGAAATTGCAGAAATGAAAATTGTCTACCGAGGAGGGGTTGACAGTGAAGGCCGTCCAGTAATGGTTGTTGTGGGGGCACATTTCCTGCTAAGATGTCTTGATCTGGAGAGATTTATTATCCATGTTGTAAAGGAATTTGAACCATTGATACAGAAACCTTACTCTATTGTGTACTTCCATTCTGCTGCAACTCTACAGATGCAACCAGATCTAGGATTAATGAAGAGGATACAACAAATTCTTGGTCGCAAGCACCGGCACAACCTTCATGCGATATATGTTCTTCACCCTACTTTTGGACTGAAGAGTGCAGTTTTTGGTTTACAACTCTGTGTGGATAATGTGGTATGGAAGAAAATAGTATATGTAGATCGTCTTCTGCAATTATTCCGCTATGTTCCTCGTGAGCAGCTGACTATTCCAGATTTTGTTTTCCAGCATGATTTGGAAGTAAATGGAGGGAAGGGCCTAATTGTGGATCCTAGAACCAAGTATGTTTATCAGAGACCATAGTCTCAAAACTTCATCCGATAAAAGAAGAAAATAGACGCTGTAGTAAGATTGTGGAATTTAAATTTGTTTGTACAGAGGCTGTAATTGTTTTGTGCAATATTAGCAGTGTATTTAGCTAACTTTGTCTGTAATTTGATTTATTTATGCAACCATATGTCCAGTCCTGTGCTAGCTAATGGCAATAAATTTCTTTGTTTCTGCAACATTTTCCCTTCTAGATATGTCATTTTAGTC

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc04g005490.2.1	SL2.50ch04:326501..332474	557	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc04g005490.2	SL2.50ch04:326470..332708	6,239	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc04g005490.2.1.1	SL2.50ch04:326470..326804	335	+	n/a
exon	exon:Solyc04g005490.2.1.10	SL2.50ch04:331150..331217	68	+	1
exon	exon:Solyc04g005490.2.1.11	SL2.50ch04:331463..331532	70	+	n/a
exon	exon:Solyc04g005490.2.1.12	SL2.50ch04:331646..331720	75	+	1
exon	exon:Solyc04g005490.2.1.13	SL2.50ch04:331836..331927	92	+	n/a
exon	exon:Solyc04g005490.2.1.14	SL2.50ch04:332399..332708	310	+	n/a
exon	exon:Solyc04g005490.2.1.2	SL2.50ch04:327460..327537	78	+	n/a
exon	exon:Solyc04g005490.2.1.3	SL2.50ch04:327775..327830	56	+	n/a
exon	exon:Solyc04g005490.2.1.4	SL2.50ch04:328869..328988	120	+	n/a
exon	exon:Solyc04g005490.2.1.5	SL2.50ch04:329319..329389	71	+	1
exon	exon:Solyc04g005490.2.1.6	SL2.50ch04:329598..329691	94	+	1
exon	exon:Solyc04g005490.2.1.7	SL2.50ch04:329805..330011	207	+	2
exon	exon:Solyc04g005490.2.1.8	SL2.50ch04:330396..330647	252	+	1
exon	exon:Solyc04g005490.2.1.9	SL2.50ch04:330888..330996	109	+	1
intron	intron:Solyc04g005490.2.1.1	SL2.50ch04:326805..327459	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.10	SL2.50ch04:331218..331462	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.11	SL2.50ch04:331533..331645	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.12	SL2.50ch04:331721..331835	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.13	SL2.50ch04:331928..332398	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.2	SL2.50ch04:327538..327774	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.3	SL2.50ch04:327831..328868	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.4	SL2.50ch04:328989..329318	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.5	SL2.50ch04:329390..329597	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.6	SL2.50ch04:329692..329804	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.7	SL2.50ch04:330012..330395	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.8	SL2.50ch04:330648..330887	n/a	+	n/a
intron	intron:Solyc04g005490.2.1.9	SL2.50ch04:330997..331149	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc04g005490

http%3A%2F%2Fwww.solgenomics.net%3A8080%2Ffeature%2F17783867%2Fdetails feature 17783867

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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