BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 148092
         (1406 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1                                                           570   e-163
At2g29560.1                                                            30   2.6  
At5g63800.1                                                            30   3.4  
At3g03770.1                                                            30   3.4  
At1g17070.1                                                            29   7.6  
At2g42710.1                                                            28   9.9  
At5g40590.1                                                            28   9.9  

>At2g43360.1
          Length = 379

 Score =  570 bits (1469), Expect = e-163
 Identities = 274/325 (84%), Positives = 300/325 (92%)
 Frame = +2

Query: 215  EAERCIKEGPRNNWTRDEIKSIYDSPLLDLLFHGAQVHRHSHNFREVQQCTLLSIKTGGC 394
            EAER I+EGPRN+W+RDEIKS+YDSPLLDLLFHGAQVHRH HNFREVQQCTLLSIKTGGC
Sbjct: 35   EAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGC 94

Query: 395  SEDCSYCPQSSRYNTGLKAQKLMNKDAVLEAARKAKEGGSTRFCMGAAWRDTIGRKTNMN 574
            SEDCSYCPQSSRY+TG+KAQ+LM+KDAV++AA+KAKE GSTRFCMGAAWRDTIGRKTN +
Sbjct: 95   SEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFS 154

Query: 575  QIVEYVKEIRDMGMEVCCTLGMLEKQQALELKKAGLTAYNHNLDTSREYYPNIITTRTYD 754
            QI+EY+KEIR MGMEVCCTLGM+EKQQALELKKAGLTAYNHNLDTSREYYPN+ITTR+YD
Sbjct: 155  QILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYD 214

Query: 755  ERLETLKHVREAGINVCSGGIIGLGEAEEDRIGXXXXXXXXXXXXESVPINALIAVKGTP 934
            +RLETL HVR+AGINVCSGGIIGLGEAEEDRIG            ESVPINAL+AVKGTP
Sbjct: 215  DRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTP 274

Query: 935  LEDQKPVDIWDMIRMISTARITMPGAMVRLSAGRVRFSVPEQALCFLAGANSIFTGEKLL 1114
            LEDQKPV+IW+MIRMI TARI MP AMVRLSAGRVRFS+ EQALCFLAGANSIFTGEKLL
Sbjct: 275  LEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLL 334

Query: 1115 TTPNNDYDADQNMFKLLGLVPKAPN 1189
            TTPNND+DADQ MFK LGL+PK P+
Sbjct: 335  TTPNNDFDADQLMFKTLGLIPKPPS 359


>At2g29560.1
          Length = 476

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +2

Query: 368 LLSIKTGGCS----EDCSYCPQSSRYNTGLKAQK-LMNKDAVLEAARKAKEGGSTRFCMG 532
           ++S K GG      ED    P  S    GL+  K  +N+    +  + A +  +T FC+G
Sbjct: 237 VISEKNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGYNDKIKIAIDIAATNFCLG 296

Query: 533 AAWRDTIGRKTNMNQIVEYVKEIRDMGMEVC 625
             +   I       Q  +  +++ DM  E+C
Sbjct: 297 TKYDLDIKSPNKSGQNFKSAEDMIDMYKEIC 327


>At5g63800.1
          Length = 719

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = +2

Query: 491 RKAKEGGSTRFCMGAAWR---------DTIGRKTNMNQIVEYVKEIRDMGMEVCCTLG 637
           +K KEGG         W          D  GR    N +V+++KEIR  G+ VC  +G
Sbjct: 68  KKTKEGGIDVIQTYVFWNLHEPKLGQYDFSGR----NDLVKFIKEIRSQGLYVCLRIG 121


>At3g03770.1
          Length = 803

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 436 VVPRRLRTIRTIFTASPCLNRQQSALLYFSKVMRMSMYLS 317
           VV RRL   +T+  +SP L R+ +++ Y SK++  + Y+S
Sbjct: 410 VVLRRLNAKKTVTKSSPRLIRENASMGYTSKLLSDARYIS 449


>At1g17070.1
          Length = 850

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/47 (25%), Positives = 30/47 (63%)
 Frame = -1

Query: 1346 LKSLKSW*NFKRRVIHLSKKIDLWLIITE*TKLKSKQMLPSFRLQNL 1206
            LK++ SW    R+++ + +  ++W++ T  ++L S+ +LP+ R+  +
Sbjct: 472  LKAISSW----RKLLEVEEDHNIWVVSTPYSQLVSEVVLPAVRIAGI 514


>At2g42710.1
          Length = 416

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 212 VEAERCIKEGPRNNWTRDEIKSIYDSPLLDLLFHGAQV 325
           VE+   ++     NWTR+EI+ + DSP ++ + +  +V
Sbjct: 82  VESTENLQSPESANWTREEIRYVKDSPSINPVSYAQRV 119


>At5g40590.1
          Length = 235

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
 Frame = -2

Query: 1030 CRKPNHCTWHCYSCC------RNHPNHIPYVHWLLVFQWCTFYCNKC 908
            C K + C +  +  C       NH +H P+   L+     T+ CN C
Sbjct: 43   CTKSSDCDYFLHKSCFELPRETNHKSHQPHTLTLIYSPKSTYTCNAC 89


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,904,734
Number of Sequences: 28581
Number of extensions: 602216
Number of successful extensions: 1665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 12,141,370
effective HSP length: 103
effective length of database: 9,197,527
effective search space used: 3357097355
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= stgn_178488
         (597 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1                                                           214   2e-56
At2g42710.1                                                            30   0.98 
At4g20850.1                                                            29   2.2  
At2g41720.1                                                            27   6.4  
At2g41720.2                                                            27   6.4  
At4g03490.1                                                            27   8.3  
At4g23500.1                                                            27   8.3  
At2g17120.1                                                            27   8.3  
At1g06920.1                                                            27   8.3  
At3g03770.1                                                            27   8.3  

>At2g43360.1
          Length = 379

 Score =  214 bits (546), Expect = 2e-56
 Identities = 98/112 (87%), Positives = 109/112 (97%)
 Frame = +2

Query: 260 EAERCIKEGPRNNWTREEIKSVYDSPLLDLLFHGAQVHRHSHNFREVQQCTLLSIKTGGC 439
           EAER I+EGPRN+W+R+EIKSVYDSPLLDLLFHGAQVHRH HNFREVQQCTLLSIKTGGC
Sbjct: 35  EAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGC 94

Query: 440 SEDCSYCPQSSRYNTGLKAQKLMNKDAVLEAARKAKEGGSTRFCMGAAWRDT 595
           SEDCSYCPQSSRY+TG+KAQ+LM+KDAV++AA+KAKE GSTRFCMGAAWRDT
Sbjct: 95  SEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDT 146


>At2g42710.1
          Length = 416

 Score = 30.0 bits (66), Expect = 0.98
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 257 VEAERCIKEGPRNNWTREEIKSVYDSPLLDLLFHGAQV 370
           VE+   ++     NWTREEI+ V DSP ++ + +  +V
Sbjct: 82  VESTENLQSPESANWTREEIRYVKDSPSINPVSYAQRV 119


>At4g20850.1
          Length = 1381

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 589 PPCSTHTKTSATSLFCLSCCFQDGILIHKFLCFQSCVVSR*LRTIRTIFTASPC 428
           P C+++  +S++             L+H+ L  +SC  SR +R  R+ F+A PC
Sbjct: 18  PSCTSYWASSSSLSLPRDFISSSTFLLHRRLRRRSCSRSRGIRLRRSGFSAMPC 71


>At2g41720.1
          Length = 823

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 SISSFMALKYIDILITLEKYSSVLCCLLRQGDAVK 446
           +IS    ++ + I +T E YSSVLC   +QG   +
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTE 583


>At2g41720.2
          Length = 816

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 SISSFMALKYIDILITLEKYSSVLCCLLRQGDAVK 446
           +IS    ++ + I +T E YSSVLC   +QG   +
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTE 583


>At4g03490.1
          Length = 588

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = +2

Query: 308 EEIKSVYDSPLLD-------LLFHGAQVHRHSHNFREVQQCTLLSIKTGGCSEDCSYCPQ 466
           E++    + P+LD        + H A ++ H H  R +    L  ++      +C++ P 
Sbjct: 8   EKVMEENEIPVLDQVTFQGNTILHLAAIYGHDHLVRRILAYELNILRNWKRGLNCNFVPS 67

Query: 467 SSRYNTGLKAQKLMNKDAVLEAARKA 544
            S Y T L  ++    D  L  A  A
Sbjct: 68  FSHYQT-LLVRRNYKGDLALHVAAAA 92


>At4g23500.1
          Length = 496

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 20/87 (22%), Positives = 32/87 (36%)
 Frame = +2

Query: 326 YDSPLLDLLFHGAQVHRHSHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQKL 505
           +D    DL  H  + HR+ H   E +   +       C    +   +      G+ +   
Sbjct: 32  HDLRATDLHNHRHRRHRNHHRGEEFEYSAI------SCRAYSASLDEFGAVGDGVTSNTA 85

Query: 506 MNKDAVLEAARKAKEGGSTRFCMGAAW 586
             +DAV + +R A  GGS  F     W
Sbjct: 86  AFRDAVSQLSRFADYGGSLLFVPAGRW 112


>At2g17120.1
          Length = 351

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 297 TGLEKKSSLFTIHHSSISSFMALKYIDILITLEKYSSV 410
           TG+  +   +TI    I SF+A +    L+T EK S V
Sbjct: 101 TGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEV 138


>At1g06920.1
          Length = 316

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 195 RWFYFSRVPRIIPHCQLQQLQ*KRNDV*RKDPEITGLEKKSSLFTIH--HSSISSFMALK 368
           R  + SR+ +I P   L  +Q KR  V +  P  + +       T H  H S+S+   LK
Sbjct: 67  RTSFESRILQISPRNSLHNIQSKRKTVYKPSPPSSSIVSAGFNKTFHQSHDSLSASSNLK 126

Query: 369 YI----DILITL 392
            I    DI+I +
Sbjct: 127 VISSEDDIIIDM 138


>At3g03770.1
          Length = 803

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -3

Query: 481 VVSR*LRTIRTIFTASPCLNRQQSTLLYFSKVMRMSMYLS 362
           VV R L   +T+  +SP L R+ +++ Y SK++  + Y+S
Sbjct: 410 VVLRRLNAKKTVTKSSPRLIRENASMGYTSKLLSDARYIS 449


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,934,719
Number of Sequences: 28581
Number of extensions: 260679
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,141,370
effective HSP length: 95
effective length of database: 9,426,175
effective search space used: 970896025
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cangn_201146
         (424 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1                                                           227   2e-60
At1g08990.1                                                            28   2.5  
At3g22880.1                                                            27   3.2  
At1g68520.1                                                            27   3.2  
At5g28643.1                                                            27   4.2  
At5g40590.1                                                            27   5.5  
At5g63280.1                                                            26   7.2  
At1g34790.1                                                            26   9.3  
At2g25430.1                                                            26   9.3  
At2g07380.1                                                            26   9.3  
At1g71770.1                                                            26   9.3  

>At2g43360.1
          Length = 379

 Score =  227 bits (578), Expect = 2e-60
 Identities = 114/140 (81%), Positives = 121/140 (86%)
 Frame = +3

Query: 3   TYDERLETLKHVREAGINVCSGGIIGLGEAEEDRIGXXXXXXXXXXXXESVPINALIAVK 182
           +YD+RLETL HVR+AGINVCSGGIIGLGEAEEDRIG            ESVPINAL+AVK
Sbjct: 212 SYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVK 271

Query: 183 GTPLEDQKPVDIWDMIRMISTARITMPSAMVRLSAGRVRFSVPEQALCFLAGANSIFTGE 362
           GTPLEDQKPV+IW+MIRMI TARI MP AMVRLSAGRVRFS+ EQALCFLAGANSIFTGE
Sbjct: 272 GTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGE 331

Query: 363 KLLTTPNNDFDADQNMFKLL 422
           KLLTTPNNDFDADQ MFK L
Sbjct: 332 KLLTTPNNDFDADQLMFKTL 351


>At1g08990.1
          Length = 551

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 263 WHCYSGCRNHPNHIPYVHWLLVFQWRAFYCNKC 165
           WH +   RN P ++  +H+L +  WR +    C
Sbjct: 442 WHRHDKARNLPENLEGIHYLGLKPWRCYRDYDC 474


>At3g22880.1
          Length = 345

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 10/37 (27%)
 Frame = +3

Query: 27  LKHVREAGINVCSG----------GIIGLGEAEEDRI 107
           +K ++EAGI+ C+G          GI GL EA+ D+I
Sbjct: 44  VKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKI 80


>At1g68520.1
          Length = 407

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   DERLETLKHVREAGINVCSGGI 74
           DE+ + +K+V E G+N  SGGI
Sbjct: 259 DEKEDVMKNVMEMGVNEMSGGI 280


>At5g28643.1
          Length = 295

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 284 RKPNHCAWHCYSGCRNHPNHIPYVH 210
           RK  H AW C SGC      + Y H
Sbjct: 54  RKRMHFAWQCISGCLATCQRLTYRH 78


>At5g40590.1
          Length = 235

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
 Frame = -3

Query: 287 CRKPNHCAWHCYSGC------RNHPNHIPYVHWLLVFQWRAFYCNKC 165
           C K + C +  +  C       NH +H P+   L+      + CN C
Sbjct: 43  CTKSSDCDYFLHKSCFELPRETNHKSHQPHTLTLIYSPKSTYTCNAC 89


>At5g63280.1
          Length = 272

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
 Frame = -3

Query: 245 CRNHPNHIPY-------VHWLLVFQWRAFYCNKCIN 159
           CR HP++  Y       VH + VF+W+  YC K  N
Sbjct: 81  CRLHPDNDLYRDQEHHKVH-VDVFEWKCGYCKKSFN 115


>At1g34790.1
          Length = 304

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 314 LRDRKPNSSCRKPNHCAWHCYSGCRNHPNH 225
           L+  +P +    P +C   C  GCRNH +H
Sbjct: 178 LKGTQPRAMLGIPCYC---CVEGCRNHIDH 204


>At2g25430.1
          Length = 654

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 9   DERLETLKHVREAGINVCSGGIIGLGEAEEDRIG 110
           D+RLE     R++G++V SGG        +DR G
Sbjct: 146 DQRLELALFERKSGVSVNSGGNSSHHSNNDDRYG 179


>At2g07380.1
          Length = 409

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
 Frame = -3

Query: 224 IPYVHWLLVFQWRA----------FYCNKCINRHTLRVSRKSGQGMQQTNSILFCLTKPY 75
           +PY  W+    WR           F+     + HT  V+ +SG+  Q T  IL  L + Y
Sbjct: 198 VPYECWVDRCLWRVRASRQGNDPNFHVYIYDSEHTCSVTERSGRSRQATPDILGVLYRDY 257


>At1g71770.1
          Length = 669

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 192 LEDQKPVDIWDMIRMISTARITMPSAMVRLSAGRVRFSVPEQALCFLAGANSIFTGEKLL 371
           + D+K  +++     +++ ++ M S  +    G V +S PE+AL  +   N    G K L
Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,496,244
Number of Sequences: 28581
Number of extensions: 192554
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,141,370
effective HSP length: 89
effective length of database: 9,597,661
effective search space used: 489480711
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cgn_131701
         (692 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1                                                           238   3e-63
At3g02350.1                                                            28   4.8  
At2g40770.1                                                            27   8.3  
At5g26190.1                                                            27   8.3  

>At2g43360.1
          Length = 379

 Score =  238 bits (606), Expect = 3e-63
 Identities = 113/155 (72%), Positives = 125/155 (80%)
 Frame = +3

Query: 78  SNCYSTLVSPXXXXXXXXXXXXXXXXXXXDGPRNDWSRDEIKSIYDSPLLDLLFHGAQVH 257
           ++CYS+L                      +GPRNDWSRDEIKS+YDSPLLDLLFHGAQVH
Sbjct: 23  ASCYSSL----------SAASAEAERTIREGPRNDWSRDEIKSVYDSPLLDLLFHGAQVH 72

Query: 258 RHAQNFREVQQCTLLSIKTGGCREDCSYCPQSSRYDTGLKVQKLMNKDAVLEAATKAKEA 437
           RH  NFREVQQCTLLSIKTGGC EDCSYCPQSSRY TG+K Q+LM+KDAV++AA KAKEA
Sbjct: 73  RHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEA 132

Query: 438 GSTRFCMGAAWRDTIGRKTNFNQILEYVKEIRNXG 542
           GSTRFCMGAAWRDTIGRKTNF+QILEY+KEIR  G
Sbjct: 133 GSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMG 167



 Score =  105 bits (262), Expect = 2e-23
 Identities = 48/60 (80%), Positives = 55/60 (91%)
 Frame = +1

Query: 511 LNMLKK*GXMGMEVCCTLGMLEKQQALELKRAGLTAYNHNLDTSREYYPNIITTRTYDER 690
           L  +K+   MGMEVCCTLGM+EKQQALELK+AGLTAYNHNLDTSREYYPN+ITTR+YD+R
Sbjct: 157 LEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDR 216


>At3g02350.1
          Length = 562

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 360 YDTGLKVQKLMNK-DAVLEAATKAKEAGSTRFCMGA 464
           YDT LK+QKL +   AV E  TKAK+ G+    + A
Sbjct: 175 YDTQLKIQKLKDTIFAVQEQLTKAKKNGAVASLISA 210


>At2g40770.1
          Length = 1649

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
 Frame = +1

Query: 175  ETIGLGMKLNPSTILLFSISS----FMALKFIDMLKTLEKCSSVLFCL*RPEAAEKIAHI 342
            ET+ L  K +   + LF +SS      A +  D   T      ++     P   E +  +
Sbjct: 1119 ETVHLQKKRDARNLFLFGLSSRSKDLNASRGDDEEPTKRNAGDIVVLSKSPSETEIVLGV 1178

Query: 343  ALNHLDMILDSKFRSL*TRMLFWRQLQRQKKLVARVSA 456
              NH    LD + +   T+ L   ++ R++ + ARV A
Sbjct: 1179 IRNHCKTHLDRESKLAATKHLHTLEVMRKEYVHARVLA 1216


>At5g26190.1
          Length = 557

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -1

Query: 608 PALLSSKACCFSSIPRVQQTSIPXIPYF-FNIFKDLIEICLPSNCVSPCSTHAET---RA 441
           P  +SSK C   SI R++ T +       F++ +D IEI  PS+   P   H      R 
Sbjct: 26  PTNISSK-CRVCSIERLEPTKVLTCNQCEFSLHEDCIEITSPSHHKHPLKLHERIIGYRR 84

Query: 440 TSFFCLC 420
               CLC
Sbjct: 85  RDQCCLC 91


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,017,194
Number of Sequences: 28581
Number of extensions: 267471
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,141,370
effective HSP length: 96
effective length of database: 9,397,594
effective search space used: 1259277596
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g43360.1
         (1137 letters)

Database: ../database/ATH1_pep_20030417 
           28,581 sequences; 12,141,370 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43360.1                                                           681   0.0  
At2g16640.1                                                            32   0.68 
At3g05350.1                                                            31   1.2  
At1g55325.1                                                            31   1.5  
At1g08600.1                                                            28   7.6  
At2g28305.1                                                            28   9.9  

>At2g43360.1
          Length = 379

 Score =  681 bits (1758), Expect = 0.0
 Identities = 341/378 (90%), Positives = 341/378 (90%)
 Frame = +1

Query: 1    MMLVRSVFRSQLRPSVSGGLQXXXXXXXXXXXXXXXERTIREGPRNDWSRDEIKSVYDSP 180
            MMLVRSVFRSQLRPSVSGGLQ               ERTIREGPRNDWSRDEIKSVYDSP
Sbjct: 1    MMLVRSVFRSQLRPSVSGGLQSASCYSSLSAASAEAERTIREGPRNDWSRDEIKSVYDSP 60

Query: 181  LLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSXX 360
            LLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMS  
Sbjct: 61   LLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKD 120

Query: 361  XXXXXXXXXXXXGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQ 540
                        GSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQ
Sbjct: 121  AVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQ 180

Query: 541  QALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGE 720
            QALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGE
Sbjct: 181  QALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGE 240

Query: 721  AEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKA 900
            AEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKA
Sbjct: 241  AEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKA 300

Query: 901  MVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSF 1080
            MVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSF
Sbjct: 301  MVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSF 360

Query: 1081 XXXXXXXXNCEKVASASH 1134
                    NCEKVASASH
Sbjct: 361  SEDDSESENCEKVASASH 378


>At2g16640.1
          Length = 1207

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 586 NLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATL 765
           N +T   Y  N++T  S D+  E  S V  + +   S G  G  E +   +     LA+ 
Sbjct: 303 NGETGAAYTSNIVTNASGDN--EVSSAVTSSPLEESSSGEKGETEGDSTCLKPEQHLASS 360

Query: 766 P-SHPESVPINALLAVKGTPLEDQKPVE 846
           P S+PES  +++     G    + KPV+
Sbjct: 361 PHSYPESTEVHSNSGSPGVTSREHKPVQ 388


>At3g05350.1
          Length = 570

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 493 GMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVR 672
           G G  V   L + E  Q++  +   +T   + +  S E  P      ++  R+E L HVR
Sbjct: 436 GTGHGVGAALNVHEGPQSISFRYGNMTPLQNGMIVSNE--PGYYEDHAFGIRIENLLHVR 493

Query: 673 DAGINVCSGGIIGLG 717
           DA      GG   LG
Sbjct: 494 DAETPNRFGGATYLG 508


>At1g55325.1
          Length = 1955

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 503  IPMPLISLMYSRIWLKLVFRPIVSRQAAPMQKRVLPASFAFLAASMTASLDMSLCALTPV 324
            +P P I + Y   WLK+    +   + AP +   LP S  +  A +   +D   CA T  
Sbjct: 1109 LPSPAILVGYQDDWLKISTNSLTHWEKAPFEPYALPKSINY--AVVCPDIDPLTCAATD- 1165

Query: 323  LYLED*GQYEQSSL 282
             + +  G  E +SL
Sbjct: 1166 -FFQQLGTGESTSL 1178


>At1g08600.1
          Length = 1448

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
 Frame = +1

Query: 472 EYIKEIRGMGMEVCCTLGMIEKQQALELKKA---------------GLTAYNHNLDTSRE 606
           EY+ E +  G + CC   +  ++  LEL+KA                 ++ N+++DT  +
Sbjct: 526 EYMSEAQSSGWDCCCCSPIPLQRLTLELEKAMRDKKSIELSSDSSSDSSSDNNSVDTDAD 585

Query: 607 YYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLA---TLPS-- 771
               + + +    ++  +  + DA +   +   I + +A ++R+  L   A   T+ S  
Sbjct: 586 VNVTISSKKKSKKKIRRI--IDDAELGKDTRTKIAIEKARQERLRSLQFSARYKTISSMG 643

Query: 772 HPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAM 903
             +S+P  A + V G    D     I  ++R IG   + +P+++
Sbjct: 644 DVKSIPEGAEVEVLG----DAHSGYIVNVVREIGEEAVRVPRSI 683


>At2g28305.1
          Length = 214

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -1

Query: 519 GAANFHPHASYFFDVFKNLAEVGFPSNCISPSSTHAKTCAPSFFCLLSSINDSVLRHESL 340
           G  N   + +          E GF    ISP++ H    APS   L+  + D V RHE +
Sbjct: 137 GLLNVEGYYNSLLSFIDKAVEEGF----ISPTARHIIVSAPSAKELVKKLEDYVPRHEKV 192

Query: 339 CLNSS 325
               S
Sbjct: 193 ASKKS 197


  Database: ../database/ATH1_pep_20030417
    Posted date:  Feb 16, 2004  1:44 PM
  Number of letters in database: 12,141,370
  Number of sequences in database:  28,581
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,346,398
Number of Sequences: 28581
Number of extensions: 447725
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,141,370
effective HSP length: 101
effective length of database: 9,254,689
effective search space used: 2563548853
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)